mRNA_Ecto-sp13_S_contig10789.716.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10789.716.1
Unique NamemRNA_Ecto-sp13_S_contig10789.716.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10789.716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10789contigEcto-sp13_S_contig10789:4224..4755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size532
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462555.282437-UTR-Ecto-sp13_S_contig10789:4223..43981681462555.282437-UTR-Ecto-sp13_S_contig10789:4223..4398Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10789 4224..4398 +
1681462555.2981267-UTR-Ecto-sp13_S_contig10789:4701..47551681462555.2981267-UTR-Ecto-sp13_S_contig10789:4701..4755Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10789 4702..4755 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462555.2905595-CDS-Ecto-sp13_S_contig10789:4398..47011681462555.2905595-CDS-Ecto-sp13_S_contig10789:4398..4701Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10789 4399..4701 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10789.716.1prot_Ecto-sp13_S_contig10789.716.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10789 4399..4701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10789.716.1

>prot_Ecto-sp13_S_contig10789.716.1 ID=prot_Ecto-sp13_S_contig10789.716.1|Name=mRNA_Ecto-sp13_S_contig10789.716.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
MTSRVTHPTCSADELLCHSCHYCCCRRWRNFSPKQRDDTDRGKHEEVGPC
SWPPGNTSYTTPLFPANHVFCRRPPPPSLARSLARSLVRPPCGAIITRAR
*
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mRNA from alignment at Ecto-sp13_S_contig10789:4224..4755+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10789.716.1 ID=mRNA_Ecto-sp13_S_contig10789.716.1|Name=mRNA_Ecto-sp13_S_contig10789.716.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=532bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10789:4224..4755+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAAGAGAATCAATTCTGCATGTAACTTACGGAAGGGATGATATTCTAGG
CTAACTTACACCTCCCGTGGCAAGACAGAGTCACATACCTGTTGGTAGAA
CAACACCAATCTTGGGTTCAACAGCGAGAGGGTACACATACCGTCAGTCG
GCGCTCAGTCCTTCGGGATGGGGGCATGACATCGCGGGTTACCCATCCCA
CTTGCTCGGCCGATGAGCTCTTGTGTCACAGCTGTCATTATTGTTGCTGC
AGACGCTGGCGGAATTTTTCCCCAAAGCAGAGAGATGACACAGATAGGGG
AAAGCATGAAGAAGTAGGGCCATGCTCTTGGCCGCCGGGAAACACATCTT
ACACGACGCCCCTCTTTCCCGCCAACCACGTGTTCTGCCGCCGCCCGCCG
CCTCCCTCGCTCGCTCGTTCGCTCGCTCGCTCGCTCGTTCGACCGCCGTG
CGGTGCAATCATTACGCGCGCCAGATGATGTAACCAGCCGCGCGACCTGC
GGAAATCCGGTGCTGCACGCTGTTCGGTTGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10789:4224..4755+

>mRNA_Ecto-sp13_S_contig10789.716.1 ID=mRNA_Ecto-sp13_S_contig10789.716.1|Name=mRNA_Ecto-sp13_S_contig10789.716.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10789:4224..4755+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACATCGCGGGTTACCCATCCCACTTGCTCGGCCGATGAGCTCTTGTG
TCACAGCTGTCATTATTGTTGCTGCAGACGCTGGCGGAATTTTTCCCCAA
AGCAGAGAGATGACACAGATAGGGGAAAGCATGAAGAAGTAGGGCCATGC
TCTTGGCCGCCGGGAAACACATCTTACACGACGCCCCTCTTTCCCGCCAA
CCACGTGTTCTGCCGCCGCCCGCCGCCTCCCTCGCTCGCTCGTTCGCTCG
CTCGCTCGCTCGTTCGACCGCCGTGCGGTGCAATCATTACGCGCGCCAGA
TGA
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