mRNA_Ecto-sp13_S_contig10787.714.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10787.714.1
Unique NamemRNA_Ecto-sp13_S_contig10787.714.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10787.714.1 vs. uniprot
Match: A0A6H5J9Z6_9PHAE (Phosphatidylinositol-3-phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Z6_9PHAE)

HSP 1 Score: 483 bits (1243), Expect = 2.230e-163
Identity = 226/227 (99.56%), Postives = 227/227 (100.00%), Query Frame = 1
Query:   19 GYGYESYPDCPLEFAGIGNIHVMRESLAKLEGLCLGGTAKDQDWMAVVEDTRWLSHVRTVLSSAWTVASKAHTQRSPVLVHCSHGWDRTSQVCSLAQMLLDPYYRTIDGFQVLIEKDWLAFGHPFHLRHAYGMPRGLTSGKEDQRSPIFLQFLDCTWQLVMQLPSYFEFNPRFLLCIADHIQSCRFGTFLCNTNKARKENMLEERSDSLWTFLELHRPVFLSQLYTV 699
            GYGYESYPDCPLEFAGIGNIHVMRESLAKLEGLCLGGTAKDQ+WMAVVEDTRWLSHVRTVLSSAWTVASKAHTQRSPVLVHCSHGWDRTSQVCSLAQMLLDPYYRTIDGFQVLIEKDWLAFGHPFHLRHAYGMPRGLTSGKEDQRSPIFLQFLDCTWQLVMQLPSYFEFNPRFLLCIADHIQSCRFGTFLCNTNKARKENMLEERSDSLWTFLELHRPVFLSQLYTV
Sbjct:  502 GYGYESYPDCPLEFAGIGNIHVMRESLAKLEGLCLGGTAKDQEWMAVVEDTRWLSHVRTVLSSAWTVASKAHTQRSPVLVHCSHGWDRTSQVCSLAQMLLDPYYRTIDGFQVLIEKDWLAFGHPFHLRHAYGMPRGLTSGKEDQRSPIFLQFLDCTWQLVMQLPSYFEFNPRFLLCIADHIQSCRFGTFLCNTNKARKENMLEERSDSLWTFLELHRPVFLSQLYTV 728          
BLAST of mRNA_Ecto-sp13_S_contig10787.714.1 vs. uniprot
Match: D8LMG1_ECTSI (Phosphatidylinositol-3-phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMG1_ECTSI)

HSP 1 Score: 476 bits (1224), Expect = 1.090e-156
Identity = 227/239 (94.98%), Postives = 227/239 (94.98%), Query Frame = 1
Query:   19 GYGYESYPDCPLEFAGIGNIHVMRESLAKLEGLCLGGTAKDQDWMAVVEDTRWLSHVRTVLSSAWTVASKAHTQRSPVLVHCSHGWDRTSQVCSLAQMLLDPYYRTIDGFQV------------LIEKDWLAFGHPFHLRHAYGMPRGLTSGKEDQRSPIFLQFLDCTWQLVMQLPSYFEFNPRFLLCIADHIQSCRFGTFLCNTNKARKENMLEERSDSLWTFLELHRPVFLSQLYTV 699
            GYGYESYPDCPLEFAGIGNIHVMRESLAKLEGLCLGGTAKDQDWMAVVEDTRWLSHVRTVLSSAWTVASKAHTQRSPVLVHCSHGWDRTSQVCSLAQMLLDPYYRTIDGFQV            LIEKDWLAFGHPFHLRHAYGMPRGLTSGKEDQRSPIFLQFLDCTWQLVMQLPSYFEFNPRFLLCIADHIQSCRFGTFLCNTNKARKENMLEERSDSLWTFLELHRPVFLSQLYTV
Sbjct:  681 GYGYESYPDCPLEFAGIGNIHVMRESLAKLEGLCLGGTAKDQDWMAVVEDTRWLSHVRTVLSSAWTVASKAHTQRSPVLVHCSHGWDRTSQVCSLAQMLLDPYYRTIDGFQVCLLVHKHKLLEVLIEKDWLAFGHPFHLRHAYGMPRGLTSGKEDQRSPIFLQFLDCTWQLVMQLPSYFEFNPRFLLCIADHIQSCRFGTFLCNTNKARKENMLEERSDSLWTFLELHRPVFLSQLYTV 919          
BLAST of mRNA_Ecto-sp13_S_contig10787.714.1 vs. uniprot
Match: H6WBB6_VAULI (Phosphatidylinositol-3-phosphatase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBB6_VAULI)

HSP 1 Score: 294 bits (752), Expect = 1.670e-90
Identity = 147/247 (59.51%), Postives = 172/247 (69.64%), Query Frame = 1
Query:    1 MVFLLVGYGYE---SYPDCPLEFAGIGNIHVMRESLAKLEGLCLGGTAKDQDWMAVVEDTRWLSHVRTVLSSAWTVASKAHTQRSPVLVHCSHGWDRTSQVCSLAQMLLDPYYRTIDGFQVLIEKDWLAFGHPFHLRHAYGMPRGLTSGKEDQRSPIFLQFLDCTWQLVMQL-------PSYFEFNPRFLLCIADHIQSCRFGTFLCNTNKARKENMLEERSDSLWTFLELHRPVFLSQLYTVVRPQ 711
            M  +  GYGYE   SYP+  L F  IGNIHVMR+SLAK+E L L     D  W  ++ED  WL HVR VLS++W  A  AH  R PVLVHCSHGWDRTSQV S+AQ+LLDPY+RT+DGF+VL+EKDWL+FGHPF LR A+G  R    GK+DQRSPIFLQFLDCT+QL+ Q+       PS FEFN RFLLCIADH+ SCRFG FL +  K RK   + ER  SLW FLE  +  FLS  YT   P+
Sbjct:  441 MANMAAGYGYEGATSYPNTRLSFMDIGNIHVMRQSLAKIEHLALNPHTLDVKWSTLIEDAGWLGHVRAVLSASWITAYHAHYDRCPVLVHCSHGWDRTSQVVSIAQILLDPYFRTMDGFRVLVEKDWLSFGHPFQLRIAHGSAR--MGGKDDQRSPIFLQFLDCTYQLMNQVGCHGGMFPSAFEFNGRFLLCIADHLHSCRFGNFLLDNEKDRKAAKINERCASLWHFLEAKKEAFLSPFYTWKSPE 685          
BLAST of mRNA_Ecto-sp13_S_contig10787.714.1 vs. uniprot
Match: A0A7S3YCI6_HETAK (Phosphatidylinositol-3-phosphatase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YCI6_HETAK)

HSP 1 Score: 276 bits (707), Expect = 1.070e-84
Identity = 130/229 (56.77%), Postives = 167/229 (72.93%), Query Frame = 1
Query:   19 GYGYES---YPDCPLEFAGIGNIHVMRESLAKLEGLCLGGTA-KDQDWMAVVEDTRWLSHVRTVLSSAWTVASKAHTQRSPVLVHCSHGWDRTSQVCSLAQMLLDPYYRTIDGFQVLIEKDWLAFGHPFHLRHAYGMPRGLTSGKEDQRSPIFLQFLDCTWQLVMQLPSYFEFNPRFLLCIADHIQSCRFGTFLCNTNKARKENMLEERSDSLWTFLELHRPVFLSQLY 693
            G+G+ES   Y    L F  IGNIHVMR+SLAK+  L +     ++  W   VE T WL HVR VLS++W VAS  H + SP LVHCSHGWDRTSQVC+LAQ+ LDPY+RT++GF VL+ KDWL FGHPF LR A+G  +   +  +DQ SPIFLQFLD TWQLV Q P++FEFN R+LLCIADH+QSCRFGTF+ +T K R+E  + E++ SLW++L+++R  FL+  +
Sbjct:  403 GFGFESSQNYTTSRLRFMNIGNIHVMRDSLAKIHQLAMSPAGVEEHQWGQSVEATGWLGHVRQVLSASWQVASSVHRRASPALVHCSHGWDRTSQVCALAQLFLDPYFRTLEGFPVLVCKDWLDFGHPFQLRLAHGSAKSQRA--DDQMSPIFLQFLDATWQLVNQFPTWFEFNARYLLCIADHLQSCRFGTFIFDTTKEREEQQMPEKTSSLWSYLKINRKTFLNPFF 629          
BLAST of mRNA_Ecto-sp13_S_contig10787.714.1 vs. uniprot
Match: A0A7S2AUP2_9STRA (Phosphatidylinositol-3-phosphatase n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AUP2_9STRA)

HSP 1 Score: 253 bits (647), Expect = 3.580e-79
Identity = 121/230 (52.61%), Postives = 157/230 (68.26%), Query Frame = 1
Query:   13 LVGYGYES---YPDCPLEFAGIGNIHVMRESLAKLEGLCLGGTAKDQDWMAVVEDTRWLSHVRTVLSSAWTVASKAHTQRSPVLVHCSHGWDRTSQVCSLAQMLLDPYYRTIDGFQVLIEKDWLAFGHPFHLRHAYGMPRGLTSGKEDQRSPIFLQFLDCTWQLVMQLPSYFEFNPRFLLCIADHIQSCRFGTFLCNTNKARKENMLEERSDSLWTFLELHRPVFLSQLY 693
            L G+G+E+   Y    ++F  IGNIH+MRES  KL  L L     D  W ++VEDT+WL H+R +L++   V    H    PVLVHCSHGWDRTSQV +LAQM++DPY+RT++GF VL+EKD+ +FGHPF LR A+G          +Q SPIF+QFLD  WQ+V Q P  FEFN R+LLCIA+H+ SCRFGTFL NT K R E  +E ++ SLW++L L+R  FL+  Y
Sbjct:   57 LTGHGFENSANYKSAQVKFMNIGNIHIMRESFTKLVQLVLNPQINDVYWGSLVEDTKWLQHIRGLLTAVHEVVRIVHEHEQPVLVHCSHGWDRTSQVAALAQMMVDPYFRTLEGFPVLMEKDFHSFGHPFQLRLAHG--ESSADRVNEQLSPIFIQFLDAAWQIVTQFPYMFEFNTRYLLCIAEHVASCRFGTFLFNTEKERLEEDIENKTVSLWSYLRLNRKYFLNLTY 284          
BLAST of mRNA_Ecto-sp13_S_contig10787.714.1 vs. uniprot
Match: B8BT92_THAPS (Phosphatidylinositol-3-phosphatase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BT92_THAPS)

HSP 1 Score: 245 bits (626), Expect = 2.360e-76
Identity = 117/228 (51.32%), Postives = 153/228 (67.11%), Query Frame = 1
Query:   19 GYGYES---YPDCPLEFAGIGNIHVMRESLAKLEGLCLGGTAKDQDWMAVVEDTRWLSHVRTVLSSAWTVASKAHTQRSPVLVHCSHGWDRTSQVCSLAQMLLDPYYRTIDGFQVLIEKDWLAFGHPFHLRHAYGMPRGLTSGKEDQRSPIFLQFLDCTWQLVMQLPSYFEFNPRFLLCIADHIQSCRFGTFLCNTNKARKENM-LEERSDSLWTFL----ELHRPVF 678
            GYGYE+   Y    + F GIGNIH +R++  K+  LC+     D  WM +VE+T W S  R +LS++W  A   H  R P+L+HCSHGWDRTSQV +LAQ+LLDPYYRT +GF  L+EKD+L+FGHPFH R  +G  +    G E Q SPIFLQFLDC +QLV Q P YFEFN R+LL +++HI SCRFGT LC++ + R+    + +R+  LW +L    EL  P+F
Sbjct:   88 GYGYENTNYYRGTTINFYGIGNIHAVRDAYQKICALCISPNTSDIQWMQLVENTNWPSMTRLILSASWQTAYHVHINRLPILLHCSHGWDRTSQVSALAQLLLDPYYRTREGFSTLVEKDFLSFGHPFHTRCGHGEGKNEQGGDEGQLSPIFLQFLDCVFQLVNQFPEYFEFNARYLLLLSEHIYSCRFGTLLCDSEREREVVAGIRQRTYCLWEYLDSIPELLNPLF 315          
BLAST of mRNA_Ecto-sp13_S_contig10787.714.1 vs. uniprot
Match: A0A7S2LPY3_9STRA (Phosphatidylinositol-3-phosphatase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LPY3_9STRA)

HSP 1 Score: 253 bits (647), Expect = 1.800e-75
Identity = 120/225 (53.33%), Postives = 156/225 (69.33%), Query Frame = 1
Query:   19 GYGYE---SYPDCPLEFAGIGNIHVMRESLAKLEGLCLGGTAKDQDWMAVVEDTRWLSHVRTVLSSAWTVASKAHTQRSPVLVHCSHGWDRTSQVCSLAQMLLDPYYRTIDGFQVLIEKDWLAFGHPFHLRHAYGMPRGLTSGKEDQRSPIFLQFLDCTWQLVMQLPSYFEFNPRFLLCIADHIQSCRFGTFLCNTNKARKENMLEERSDSLWTFLELHRPVFLS 684
            GYGYE   +YP+  L F  IGNIH + +S  KL  LC   +A D  W  +VE+T+WL H+R +L ++W  A   H +R PVLVHCSHGWDRTSQVC+LAQ+ LDPYYRT DGF  L+EKD+L+FGHPFHLR A+G     +  KE Q + IF+QFLDC +Q++ Q PS+FEFN +++  IA+H+ SCRFGTFLC+  + R    L  R+ S+W +LE  R  FLS
Sbjct:  451 GYGYEQNSNYPNMHLTFCNIGNIHAVSDSYKKLMNLCHSTSANDVAWTQLVEETKWLHHLRVILKASWDCAVTVHYKRLPVLVHCSHGWDRTSQVCALAQLFLDPYYRTYDGFFALVEKDFLSFGHPFHLRAAHGERN--SERKESQMAQIFIQFLDCVYQILSQFPSFFEFNGKYVSVIAEHVYSCRFGTFLCDNERDRVRAQLSIRTYSIWDYLESKRE-FLS 672          
BLAST of mRNA_Ecto-sp13_S_contig10787.714.1 vs. uniprot
Match: A0A7S1D538_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D538_CYCTE)

HSP 1 Score: 243 bits (620), Expect = 4.060e-74
Identity = 117/221 (52.94%), Postives = 149/221 (67.42%), Query Frame = 1
Query:   19 GYGYES---YPDCPLEFAGIGNIHVMRESLAKLEGLCLGGTAKDQDWMAVVEDTRWLSHVRTVLSSAWTVASKAHTQRSPVLVHCSHGWDRTSQVCSLAQMLLDPYYRTIDGFQVLIEKDWLAFGHPFHLRHAYGMPRGLTS---GKEDQRSPIFLQFLDCTWQLVMQLPSYFEFNPRFLLCIADHIQSCRFGTFLCNTNKARKENM-LEERSDSLWTFLE 660
            GYGYE+   Y  C L+F GIGNIH +R++  K+  LC   T  D  W   VEDT+WLSH+RT+LS++W  A   H  R PV +HCSHGWDRTSQV  LAQ++LDPY+RT+DGF  LIEKD+LAFGHPFH R A+G  RG      G + Q SPIF+QF+D  +QLV   PS FE  P +L  +A H+ SCRFGT LC+T + R+    + +R+ S+W  LE
Sbjct:  267 GYGYENTSNYVGCTLQFCGIGNIHAVRDASNKIASLCNSQTTNDSSWATNVEDTKWLSHIRTILSASWEAAYWMHIHRLPVFLHCSHGWDRTSQVAVLAQLILDPYFRTMDGFVTLIEKDFLAFGHPFHTRCAHGEGRGGEGPNVGDDSQISPIFIQFIDAAYQLVNLFPSEFEITPLYLKELASHVYSCRFGTLLCDTERERELVAGIRQRTHSVWDHLE 487          
BLAST of mRNA_Ecto-sp13_S_contig10787.714.1 vs. uniprot
Match: A0A1E7FLN7_9STRA (Phosphatases II n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FLN7_9STRA)

HSP 1 Score: 238 bits (608), Expect = 1.330e-73
Identity = 116/225 (51.56%), Postives = 153/225 (68.00%), Query Frame = 1
Query:   19 GYGYES---YPDCPLEFAGIGNIHVMRESLAKLEGLCLGGTAKDQDWMAVVEDTRWLSHVRTVLSSAWTVASKAHTQRSPVLVHCSHGWDRTSQVCSLAQMLLDPYYRTIDGFQVLIEKDWLAFGHPFHLRHAYGMPRG-------LTSGKEDQRSPIFLQFLDCTWQLVMQLPSYFEFNPRFLLCIADHIQSCRFGTFLCNTNKARK-ENMLEERSDSLWTFLE 660
            GYGYE+   Y +  L+F  I NIH +R+S  KL  +C   +A D  W +++EDTRWLSH+RT+L+++W  A   H  R PVLVHCSHGWDRTSQ   LAQ+ LDPYYRT  GF VL+EKD+++FGHPFHLR A+G  R         +S  E Q SPIFLQFLDC +QLV   P+ FEFN ++LL ++ H+ SCRFG  LC+T + R+    + +R+ S+W +LE
Sbjct:  137 GYGYENTSNYSNTTLQFCNIQNIHGVRDSYQKLCNVCSSRSASDVQWNSLIEDTRWLSHIRTILAASWETAYWVHVWRIPVLVHCSHGWDRTSQAACLAQLFLDPYYRTQHGFGVLVEKDFMSFGHPFHLRCAHGEGRSDVKNNSKSSSIDEGQISPIFLQFLDCVYQLVQLYPNAFEFNTQYLLILSFHVYSCRFGNMLCDTEREREIMASIRQRTYSIWDYLE 361          
BLAST of mRNA_Ecto-sp13_S_contig10787.714.1 vs. uniprot
Match: A0A7S3LF13_9STRA (Phosphatidylinositol-3-phosphatase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LF13_9STRA)

HSP 1 Score: 233 bits (595), Expect = 2.720e-73
Identity = 112/226 (49.56%), Postives = 151/226 (66.81%), Query Frame = 1
Query:   19 GYGYES---YPDCPLEFAGIGNIHVMRESLAKLEGLCLGGTAKDQDWMAVVEDTRWLSHVRTVLSSAWTVASKAHTQRSPVLVHCSHGWDRTSQVCSLAQMLLDPYYRTIDGFQVLIEKDWLAFGHPFHLRHAYGMPRG--------LTSGKEDQRSPIFLQFLDCTWQLVMQLPSYFEFNPRFLLCIADHIQSCRFGTFLCNTNKARKENM-LEERSDSLWTFLE 660
            GYGYE+   Y    L+F  IGNIH +R++  K+  LCL    +D  W ++VEDT+WLS +R +L+++W  A   H  R PVL+HCSHGWDRTSQV  +AQ+LLDPYYRT  GF  L+EKD++AFGHPFH R A+G  R         + +  E Q SPIF+QFLD  +Q+V Q P  FEFN ++L+ I+DH+ SCRFG FLC++ + R+    L +R+ SLW  L+
Sbjct:    7 GYGYENTSNYVGTTLQFCNIGNIHAVRDAYQKMCALCLAPAVQDIQWPSLVEDTKWLSSIRFILAASWETAFWIHVHRLPVLLHCSHGWDRTSQVAVIAQLLLDPYYRTCKGFACLVEKDFMAFGHPFHTRCAHGEGRSQDATTAAPIPNHDEGQVSPIFIQFLDAVFQVVNQYPEAFEFNAKYLVYISDHVYSCRFGNFLCDSERERERVAGLRQRTHSLWDHLD 232          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10787.714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9Z6_9PHAE2.230e-16399.56Phosphatidylinositol-3-phosphatase n=1 Tax=Ectocar... [more]
D8LMG1_ECTSI1.090e-15694.98Phosphatidylinositol-3-phosphatase n=1 Tax=Ectocar... [more]
H6WBB6_VAULI1.670e-9059.51Phosphatidylinositol-3-phosphatase n=1 Tax=Vaucher... [more]
A0A7S3YCI6_HETAK1.070e-8456.77Phosphatidylinositol-3-phosphatase (Fragment) n=1 ... [more]
A0A7S2AUP2_9STRA3.580e-7952.61Phosphatidylinositol-3-phosphatase n=2 Tax=Dictyoc... [more]
B8BT92_THAPS2.360e-7651.32Phosphatidylinositol-3-phosphatase (Fragment) n=1 ... [more]
A0A7S2LPY3_9STRA1.800e-7553.33Phosphatidylinositol-3-phosphatase n=1 Tax=Leptocy... [more]
A0A7S1D538_CYCTE4.060e-7452.94Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A1E7FLN7_9STRA1.330e-7351.56Phosphatases II n=1 Tax=Fragilariopsis cylindrus C... [more]
A0A7S3LF13_9STRA2.720e-7349.56Phosphatidylinositol-3-phosphatase n=1 Tax=Amphora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10787contigEcto-sp13_S_contig10787:796..3546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score481.9
Seed ortholog evalue1.8e-133
Seed eggNOG ortholog2880.D8LMG1
Model size714
KEGG koko:K18081
KEGG Pathwayko00562,ko01100,ko04070,map00562,map01100,map04070
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004438,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006950,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009414,GO:0009415,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0010035,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0023052,GO:0030258,GO:0031410,GO:0031668,GO:0031982,GO:0033554,GO:0034593,GO:0035556,GO:0042221,GO:0042578,GO:0042631,GO:0043226,GO:0043227,GO:0043229,GO:0044237,GO:0044238,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046486,GO:0046488,GO:0046839,GO:0046856,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0052629,GO:0052744,GO:0052866,GO:0065007,GO:0070887,GO:0071214,GO:0071229,GO:0071462,GO:0071496,GO:0071704,GO:0080134,GO:0097708,GO:0104004,GO:0106018,GO:1901700,GO:1901701,GO:2000070
Exons7
EggNOG free text desc.pre-mRNA cleavage required for polyadenylation
EggNOG OGsCOG0724@1,KOG0108@2759,KOG4471@1,KOG4471@2759
EC3.1.3.64,3.1.3.95
Cds size714
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10787.714.1prot_Ecto-sp13_S_contig10787.714.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10787 796..3546 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462555.1352308-CDS-Ecto-sp13_S_contig10787:795..8761681462555.1352308-CDS-Ecto-sp13_S_contig10787:795..876Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10787 796..876 +
1681462555.147498-CDS-Ecto-sp13_S_contig10787:1202..12941681462555.147498-CDS-Ecto-sp13_S_contig10787:1202..1294Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10787 1203..1294 +
1681462555.1571183-CDS-Ecto-sp13_S_contig10787:1736..18541681462555.1571183-CDS-Ecto-sp13_S_contig10787:1736..1854Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10787 1737..1854 +
1681462555.1698914-CDS-Ecto-sp13_S_contig10787:2028..20881681462555.1698914-CDS-Ecto-sp13_S_contig10787:2028..2088Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10787 2029..2088 +
1681462555.1805396-CDS-Ecto-sp13_S_contig10787:2478..26601681462555.1805396-CDS-Ecto-sp13_S_contig10787:2478..2660Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10787 2479..2660 +
1681462555.188462-CDS-Ecto-sp13_S_contig10787:3022..30921681462555.188462-CDS-Ecto-sp13_S_contig10787:3022..3092Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10787 3023..3092 +
1681462555.1965287-CDS-Ecto-sp13_S_contig10787:3435..35461681462555.1965287-CDS-Ecto-sp13_S_contig10787:3435..3546Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10787 3436..3546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10787.714.1

>prot_Ecto-sp13_S_contig10787.714.1 ID=prot_Ecto-sp13_S_contig10787.714.1|Name=mRNA_Ecto-sp13_S_contig10787.714.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=238bp
MVFLLVGYGYESYPDCPLEFAGIGNIHVMRESLAKLEGLCLGGTAKDQDW
MAVVEDTRWLSHVRTVLSSAWTVASKAHTQRSPVLVHCSHGWDRTSQVCS
LAQMLLDPYYRTIDGFQVLIEKDWLAFGHPFHLRHAYGMPRGLTSGKEDQ
RSPIFLQFLDCTWQLVMQLPSYFEFNPRFLLCIADHIQSCRFGTFLCNTN
KARKENMLEERSDSLWTFLELHRPVFLSQLYTVVRPQ*
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mRNA from alignment at Ecto-sp13_S_contig10787:796..3546+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10787.714.1 ID=mRNA_Ecto-sp13_S_contig10787.714.1|Name=mRNA_Ecto-sp13_S_contig10787.714.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2751bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10787:796..3546+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGTTTCTTCTTGTAGGCTACGGCTACGAGAGCTACCCGGACTGCCC GCTGGAGTTCGCGGGTATTGGCAACATTCACGTGAGTACCAGCATGGAAA CGTGTTCGTCTTGTGAACGACTAGTGTTAGCTTTGAGTTTAACGCCGTGC CACTAGTCGTATGAGTGAAAGAAACACCCAAGGTCGGTCCGTGGAGGTGC AAGATGTGGACAACATGCACCGATACAATACCAGGTACCGCATAGCGACG ACTGCCTCATATACCAGGTACTAGTGTCTACGGTAACGTCATGCTTGTGG TGCCTCTACCCAGCATATCTTGGGTGATTCACCCAGCTATCACAGCATGA AGCCAAGTGGTCCTTCGGAGAACACCCGAGCACAATCGTAGTTTTTTTTT CTTTAAGGTGATGCGAGAGAGCCTCGCAAAATTGGAGGGGCTTTGTCTAG GTGGCACGGCCAAGGACCAAGACTGGATGGCGGTGGTTGAGGATACAAGG TATGTAGCAGGCGAAAAGAGTACCTGCGCCGAGCCCTGTATTCTGTCGTG TACTGCGTAAGGCAAAGTGTCTTTATTTGTGGTGATTTGTTGGGAGCAGG GAGCTAAAATTTATGCGTTGGAATATGGTCGGACTTCGAAGCGTAGGCCA GCAACGGCCTCCAGAAAGAACGGGTGCCTCTTGAACGGGCGCACAAACGT AGCATTGGATGCGCACGAGATGTGCGGCAAGATGTGTCCTGATGTTGTGC AGAGAAGCAGATATGGTGAAGACAAGCACGCGCACGACCACTCACCGACG GCGAAGCTGCCGAAATACACCAGCTTGGAACAGGCTTTGCATGGTGCCAT CCCAGCACCGCTACATTCTGACGTGTACGTTTTCTACATTGTGGTCTGTC GTTGTCCTTGTGTCTTCGCGGTGCATGGTGCGTGCTATTAGGTGGCTCTC TCACGTGCGCACCGTTCTTTCGTCGGCTTGGACCGTGGCCTCTAAGGCGC ACACACAGAGGAGCCCCGTTTTGGTGCACTGCAGTCATGGCTGGGACCGG ACTTCTCAGGTGGCCCATTAGTCTAAAAAAAGTGTTCTGAGCGGCAGTTC TCAATGTCAAAGCTGTGACTACGATCGCATGGGTACGCAGACGCACAGCT CTTACACCGACGTAGATCGAACCGACCCTTGTCCCTCCCTATCTCTTGAT TTGCCGTTCTTGTCGCTTGTGTCGATCTTGCAGGTCTGCTCCTTGGCCCA GATGCTGCTCGACCCGTACTACCGAACAATCGACGGCTTTCAGGTTTGTC TCCTTGTACACACGCACAAGTTGCTCGAGGCGAACACTCTGTCCATGACA TGGAGCTCCTACTTGGGGTGTGTTGTTTGTGCGGTGTTGTCTCCCTCCTT TGTGAAGATTTATCCCGCACAACCACGAGCCAGCCGGCGAATCACGGACA TCACTGCACTATACTCGTGTTCTACTTTCACGGAACATGGGATTCGCCGA ACAACCCGTGGGTGCTACGTCTATTTCCCAGTTTAGGGGGAAGGTGGACT TTGCTGGTTGTCGTAGCTGGCTGGCGATGTGCGGTCAAGGTGTCGGAAGG GTGACAAGCGAAAGTCGTGTACCAAGGTCTAGCACCCTCCTTGCTGTATA CGCGCGTCCGCGAATAACTGCTTTATATATCAGGTGCTGATCGAGAAGGA CTGGTTAGCGTTCGGGCACCCTTTCCACCTCCGGCATGCGTACGGGATGC CGAGGGGGTTGACGTCAGGCAAGGAAGATCAACGCAGCCCCATCTTCCTG CAGTTCTTGGACTGCACGTGGCAGCTTGTCATGCAGCTGCCCTCGTACTT TGAGTTTAACCCAAGGTATGTAATGTAGGTCGGATGTTGTCTCCGCTGGC GATACTCGACTCGTCTGCTGGGTGACGCTCGCTTTATGTATTAGCCTGGC GCTCACGTTTGCACGTCGTGGGTCAATTGTCCTTCTAGACGGGAGCTCCA GTGGTTGTTGTGGACACAGCAATGCACGCTTTCGTAAGTCCCAACTCAAC AGAGAGCGCTTCCGCTCAGAGACGGATTTTTTGAACATCACGCACGCTAG GATTCCTAGTGTTAATCTTTTTGTTCGCGTGTACTCCACTCACACGGCAA CTGGCGCTGCTCTAATGTCGCGTTCATCTCGACGACGTCCCTCCTTCCTC TCGATGGCGATTGTTGATTGCGGCCAGGTTCCTGCTGTGCATCGCAGATC ATATCCAGAGCTGTCGCTTCGGCACATTCTTGTGCAACACGAACAAGGTA AGTTCTACGGTCTGGTTCTGTGCCTCGGTAGATCCAGAGACGACTCTGTC GCAAAATACACCGCTCCCCAACTCCGCATCTCATGGTCGCCACACCAACA TGCTTGGTCCAGCAAAGCAGAATATTTTCTTCGTGTGGTTCGTACATTGA GCATCCCCGCGTTGAACACATCCCTGTAAACCGCACGGATAGGCTACTTT TTCGTATGAGCGTTACCTCATTTCGTATTTCCCTGTCCGGTCGATTACAC ACCTTCAGACATAAAGAAACCTAGTCGCTGTTTGTGTAATCTCGTGCATG TGGACTGTCCGTACGCGTGTCGTTGTTGTGTCCTGTGCAGGCCAGGAAAG AGAACATGCTAGAGGAGAGGAGCGACAGCCTGTGGACATTCCTCGAGTTG CATCGGCCGGTCTTCCTCTCTCAGCTCTACACGGTGGTGCGTCCGCAATA G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10787:796..3546+

>mRNA_Ecto-sp13_S_contig10787.714.1 ID=mRNA_Ecto-sp13_S_contig10787.714.1|Name=mRNA_Ecto-sp13_S_contig10787.714.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10787:796..3546+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGTTTCTTCTTGTAGGCTACGGCTACGAGAGCTACCCGGACTGCCC
GCTGGAGTTCGCGGGTATTGGCAACATTCACGTGATGCGAGAGAGCCTCG
CAAAATTGGAGGGGCTTTGTCTAGGTGGCACGGCCAAGGACCAAGACTGG
ATGGCGGTGGTTGAGGATACAAGGTGGCTCTCTCACGTGCGCACCGTTCT
TTCGTCGGCTTGGACCGTGGCCTCTAAGGCGCACACACAGAGGAGCCCCG
TTTTGGTGCACTGCAGTCATGGCTGGGACCGGACTTCTCAGGTCTGCTCC
TTGGCCCAGATGCTGCTCGACCCGTACTACCGAACAATCGACGGCTTTCA
GGTGCTGATCGAGAAGGACTGGTTAGCGTTCGGGCACCCTTTCCACCTCC
GGCATGCGTACGGGATGCCGAGGGGGTTGACGTCAGGCAAGGAAGATCAA
CGCAGCCCCATCTTCCTGCAGTTCTTGGACTGCACGTGGCAGCTTGTCAT
GCAGCTGCCCTCGTACTTTGAGTTTAACCCAAGGTTCCTGCTGTGCATCG
CAGATCATATCCAGAGCTGTCGCTTCGGCACATTCTTGTGCAACACGAAC
AAGGCCAGGAAAGAGAACATGCTAGAGGAGAGGAGCGACAGCCTGTGGAC
ATTCCTCGAGTTGCATCGGCCGGTCTTCCTCTCTCAGCTCTACACGGTGG
TGCGTCCGCAATAG
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