mRNA_Ecto-sp13_S_contig10785.712.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10785.712.1
Unique NamemRNA_Ecto-sp13_S_contig10785.712.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10785.712.1 vs. uniprot
Match: A0A6H5KCP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP4_9PHAE)

HSP 1 Score: 282 bits (722), Expect = 7.120e-90
Identity = 167/180 (92.78%), Postives = 168/180 (93.33%), Query Frame = 1 
Query:    1 MDAEWEGILSGDDEQEDVNXXXXXXXXTAMLSDEELLATDASEGGLLGDEGEXXXXXXXXXXXXXXX-RKPRVWYDSYKARMKAEKAKEAAWQEKRKTFSKAHNDYLDEAQHNREIAAARREKYTKKFYRDKKIYDIVKERGRKAVREATWATRWPRQVTRKLEDLQEGEWITGKVRNVE 537
            MDAEWEGILSGDDEQEDV+        TAMLSDEELLATDAS GGLLGDEGE XXXXXXXXXXXXXX RKPRVWYDSYKARMKAEKAKEAAWQEKRKTFSKAHNDYLDEAQ NREIAAARREKYTKKFYRDKKIYDIVKERGRKAVREATWATRWPRQVTRKLEDLQEGEWITGKVRNVE
Sbjct:  147 MDAEWEGILSGDDEQEDVDEGDEDDDATAMLSDEELLATDASVGGLLGDEGEEXXXXXXXXXXXXXXXRKPRVWYDSYKARMKAEKAKEAAWQEKRKTFSKAHNDYLDEAQRNREIAAARREKYTKKFYRDKKIYDIVKERGRKAVREATWATRWPRQVTRKLEDLQEGEWITGKVRNVE 326
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BLAST of mRNA_Ecto-sp13_S_contig10785.712.1 vs. uniprot
Match: D8LK22_ECTSI (30S ribosomal protein S1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK22_ECTSI)

HSP 1 Score: 238 bits (606), Expect = 4.890e-74
Identity = 149/181 (82.32%), Postives = 149/181 (82.32%), Query Frame = 1 
Query:    1 MDAEWEGILSGDDEQEDVNXXXXXXXXTAMLSDEE-LLATDASEGGLLGDEGEXXXXXXXXXXXXXXX-RKPRVWYDSYKARMKAEKAKEAAWQEKRKTFSKAHNDYLDEAQHNREIAAARREKYTKKFYRDKKIYDIVKERGRKAVREATWATRWPRQVTRKLEDLQEGEWITGKVRNVE 537
            MDAEWEGILS         XXXXXXXX         LLATDASEGGLLGDE E  XXXXX         RKPRVWYDSYKARMKAEKAKEAAWQEKRKTFSKAHNDYLDEAQ NREIAAARREKYTKKFYRDKKIYDIVKERGRKAVREATWATRWPRQVTRKLEDLQEGEWI GKVRNVE
Sbjct:    1 MDAEWEGILSDXXXXXXXXXXXXXXXXXXXXXXXXXLLATDASEGGLLGDEAEGEXXXXXEEGVERGRGRKPRVWYDSYKARMKAEKAKEAAWQEKRKTFSKAHNDYLDEAQRNREIAAARREKYTKKFYRDKKIYDIVKERGRKAVREATWATRWPRQVTRKLEDLQEGEWIKGKVRNVE 181
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10785.712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCP4_9PHAE7.120e-9092.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK22_ECTSI4.890e-7482.3230S ribosomal protein S1 n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10785contigEcto-sp13_S_contig10785:3672..5496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size543
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionRNA-binding domain, S1
Ec32 orthologEc-06_007880.1
Cds size543
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462555.0242019-CDS-Ecto-sp13_S_contig10785:3671..40271681462555.0242019-CDS-Ecto-sp13_S_contig10785:3671..4027Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10785 3672..4027 +
1681462555.0378458-CDS-Ecto-sp13_S_contig10785:4765..48671681462555.0378458-CDS-Ecto-sp13_S_contig10785:4765..4867Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10785 4766..4867 +
1681462555.0470848-CDS-Ecto-sp13_S_contig10785:5411..54961681462555.0470848-CDS-Ecto-sp13_S_contig10785:5411..5496Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10785 5412..5496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10785.712.1prot_Ecto-sp13_S_contig10785.712.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10785 3672..5496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10785.712.1

>prot_Ecto-sp13_S_contig10785.712.1 ID=prot_Ecto-sp13_S_contig10785.712.1|Name=mRNA_Ecto-sp13_S_contig10785.712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=181bp
MDAEWEGILSGDDEQEDVNEDDEDDDATAMLSDEELLATDASEGGLLGDE
GEGQEDEQEEGVGRGRGRKPRVWYDSYKARMKAEKAKEAAWQEKRKTFSK
AHNDYLDEAQHNREIAAARREKYTKKFYRDKKIYDIVKERGRKAVREATW
ATRWPRQVTRKLEDLQEGEWITGKVRNVERW
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mRNA from alignment at Ecto-sp13_S_contig10785:3672..5496+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10785.712.1 ID=mRNA_Ecto-sp13_S_contig10785.712.1|Name=mRNA_Ecto-sp13_S_contig10785.712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10785:3672..5496+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGCGGAATGGGAGGGGATCCTCTCTGGCGATGACGAGCAAGAGGA
TGTGAACGAAGACGACGAAGATGATGATGCAACCGCGATGCTCAGCGACG
AAGAGCTGCTTGCGACGGACGCCAGCGAGGGCGGCCTGTTGGGCGACGAG
GGGGAGGGGCAGGAGGACGAGCAGGAGGAGGGTGTTGGGCGGGGCCGAGG
GCGGAAGCCACGCGTCTGGTACGACAGCTACAAGGCGCGCATGAAGGCGG
AGAAGGCGAAGGAGGCCGCCTGGCAGGAGAAACGGAAGACTTTCTCCAAG
GCGCACAACGACTACCTGGACGAGGCGCAGCACAACCGGGAGATCGCGGC
CGCAAGGTGACCCCGACCTCTCAGCCCCACGGGGGAAAGCCAGGAGCTCT
GCTCGATTGTGTACATTGCTAAATAAAAGTTGTTTGTGCAATACTGCATA
GCCGTGCCCTCAATCGGTGGCTGTTGCATCCAAAAGGGCAATTCTGTGTA
CGAAATACGGTCGTTCCTCGACGTTCTTTGTCTCCTTTGCGGTGGTCTGA
GTTTCCCTGCCGTAACGCCGTTTGCCCCCTGCCGTCGAATGCTTGGTTGG
TGGATTGGGGGCTGGCTTGTAGACGGGACCCTCCTTGATTGTCCTCCGCA
AGGACTACTGTAGATCATGCGATTGATTTCAGCAGTGGCAAGGGGGCAGT
GCACTCCTACGCACTCGTTGTCTGTAGCGTTTCACGCCCGTTTCGACGCA
CGGGTTCGAGGAGAGTACTGCTGTAGGTCGTGTACGTTTAGCGTCGGATG
CCCGCGGTGGCAACACAGGGCAACTTCACTCGGGCTCTAAGCTCTAAAAG
TACCCAATCACCCCCCCTGTGATTAGAGAACGACACGCTTTCCCTTTCTT
CGCTGGACGCAATGACGACAAGCGAGTGTGGCACTCCCACACACCGCTCG
ACAGTTACGGATTTATAAGAGTCTCGGAATCGCTCCCAACGGATGTACGT
TCAGCGTGGGACTCACCTAGCCCTGCGACTTATCAACCTGCCGTTCCATT
GAAACGTGAAACTGAATGCGGGATGACGAACAACCGTTACACAGGCGGGA
GAAGTACACGAAGAAGTTCTACCGCGACAAGAAGATCTACGACATCGTTA
AGGAGAGGGGCAGGAAGGCAGTCAGGGAGGCGACCTGGGCCACTAGGTGA
GGAGAGACAAAACAGCACACCCGTAGTGCTTGGAGCGATACATTGCTTGC
CCATGGGTTGGGGCTTTTCCGGCGGAGGCATCCCATCGGTCTGACCAGAC
TCATAAGGTAACATCCAGGAGCCCCCCGCAATGACGGGAGTAGACCATTC
AACCATTTCACAAGCTGGTCGGGCGCATGTGTCTGCTGCAGTTGAGGCTT
CCCGTCGTCGCAGAGTCGTCGTGACGACGGACGGACATTCGCAATGGCGA
AGCGCTCGACCTGGCGTACCGCAGCGGCACGCCGTGATACCAGCTCCACT
GCGAGTTATCCATGGTGCAGCGGGCTCGATCCCTAGTGACCGCCCCCCGC
TCCCCCTGGCGACTCACGCCCTGCTCCACCTGTCGCGCCAGCCTTGGTGC
CAGCACAACGTTTTTTAAGACACGACAAGCCACTATCGCCCGTCGCCTCT
TCCCCTCTCCCATCTGCTCTGCGGGCGCGCACGGCGTGTGATTTGATACG
ATTCGACCCACTGCCGTTTTTGGCTTTGCTTCTTTTGCAGGTGGCCGCGG
CAGGTCACTCGGAAGCTGGAGGACCTTCAAGAGGGCGAATGGATCACGGG
CAAGGTCCGCAACGTCGAGAGGTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10785:3672..5496+

>mRNA_Ecto-sp13_S_contig10785.712.1 ID=mRNA_Ecto-sp13_S_contig10785.712.1|Name=mRNA_Ecto-sp13_S_contig10785.712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=543bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10785:3672..5496+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGCGGAATGGGAGGGGATCCTCTCTGGCGATGACGAGCAAGAGGA
TGTGAACGAAGACGACGAAGATGATGATGCAACCGCGATGCTCAGCGACG
AAGAGCTGCTTGCGACGGACGCCAGCGAGGGCGGCCTGTTGGGCGACGAG
GGGGAGGGGCAGGAGGACGAGCAGGAGGAGGGTGTTGGGCGGGGCCGAGG
GCGGAAGCCACGCGTCTGGTACGACAGCTACAAGGCGCGCATGAAGGCGG
AGAAGGCGAAGGAGGCCGCCTGGCAGGAGAAACGGAAGACTTTCTCCAAG
GCGCACAACGACTACCTGGACGAGGCGCAGCACAACCGGGAGATCGCGGC
CGCAAGGCGGGAGAAGTACACGAAGAAGTTCTACCGCGACAAGAAGATCT
ACGACATCGTTAAGGAGAGGGGCAGGAAGGCAGTCAGGGAGGCGACCTGG
GCCACTAGGTGGCCGCGGCAGGTCACTCGGAAGCTGGAGGACCTTCAAGA
GGGCGAATGGATCACGGGCAAGGTCCGCAACGTCGAGAGGTGG
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