mRNA_Ecto-sp13_S_contig10784.710.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10784.710.1
Unique NamemRNA_Ecto-sp13_S_contig10784.710.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10784.710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10784contigEcto-sp13_S_contig10784:182..2503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1639
Hectar predicted targeting categoryother localisation
Exons2
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462554.906884-CDS-Ecto-sp13_S_contig10784:181..4031681462554.906884-CDS-Ecto-sp13_S_contig10784:181..403Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10784 182..403 +
1681462554.9179904-CDS-Ecto-sp13_S_contig10784:1086..11281681462554.9179904-CDS-Ecto-sp13_S_contig10784:1086..1128Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10784 1087..1128 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462554.9279454-UTR-Ecto-sp13_S_contig10784:1128..25031681462554.9279454-UTR-Ecto-sp13_S_contig10784:1128..2503Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10784 1129..2503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10784.710.1prot_Ecto-sp13_S_contig10784.710.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10784 182..1128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10784.710.1

>prot_Ecto-sp13_S_contig10784.710.1 ID=prot_Ecto-sp13_S_contig10784.710.1|Name=mRNA_Ecto-sp13_S_contig10784.710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp
MPNAAGASARLGGGASAGGGERSAVGGEGGATAGGGGLGTSDSIKARVLK
GFAGGGRGAFGRSNDSTREDRILEGMPPDGTADTGAV*
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mRNA from alignment at Ecto-sp13_S_contig10784:182..2503+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10784.710.1 ID=mRNA_Ecto-sp13_S_contig10784.710.1|Name=mRNA_Ecto-sp13_S_contig10784.710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2322bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10784:182..2503+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGAACGCTGCGGGGGCTAGCGCGCGCTTGGGCGGGGGCGCTTCCGC
AGGGGGCGGCGAGCGCTCGGCTGTTGGTGGGGAAGGCGGCGCAACGGCGG
GGGGCGGGGGGCTGGGTACCAGTGACAGCATTAAGGCCCGTGTGTTGAAA
GGATTCGCGGGGGGTGGGAGAGGCGCTTTCGGGAGGTCGAACGATTCAAC
GCGGGAGGATCGAATATTGGAGGTGGGCGGTCCGTTGTCCGGAATTGGGC
GGGGAGGGGTAGCGATGTGTGCAGTTCTGAGATCTTGGGCTTGGTTTGTT
TTGGTGCAGTTTGTCCTCGTGTTCAGACCGGACGTTGCCCTTAGATTTTG
AGGCTCCTTCTGAGGTGCCTCTGCATACCTAACAAGCAAATGTGTTGGAC
CATGGTATGCATGTATGCATAGGTGTTGTAGGAGTTTTTTCGAGCTGGAC
AAGCCCCGCCATCTTGTGTGTTTTGGTGAGAGCACGTGCCCGCTCCTCTC
TTCGGTATCTTGCGCCAAGCAATTCCCCGCGATGTCTGTTTTTTGCTAGA
GAACAGGGGCTTTTATGCTGCGTTGACGTTGTTCCAAGCTCCTTTCTTTT
TTGTTTCGTGCTAGGCTTATCTTGTCTCTTGCGTTATGTTTAAAATCCTA
CTCCAGAAGGTGGCCTTCGTCGACACCCTCAAAGCGATCTTTGCCGCAGC
CGCGGCTCGGCGCCTTTGCACTTCTTGTCTGTCGTTGCATACCCTTGGTG
AAGTTCAACTTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCGCCCTCTCTC
TCTCTTCCCCCTCTATCTCTACCCCCCCTCTCTTTCCCCCCTCCCCCTGT
GTCGATGCCGCCGTGTCTCCTTTGGCCTCGTGATTCCATTCCCACTCGAG
AGCAGGGTATGCCCCCAGACGGGACCGCCGACACCGGTGCAGTATGACGT
CACGCCAAGCAAGGCCTCGCTGTCGCCGCCGCCATCGACCCGGCCGTTTC
CAGGTCATTCTCATGGCCACGGCGATGTAGCATGTCGTATTTACAGACCG
TGGCACCACGCCCGACCTGCGCAACGCTGTTCCGAGGGTTGGTTGGAGGC
TTTGGCTCGCCCCCGGGCGTGGTTGTGTCTTGCTCTGCGCAGAATCAGCT
GCTCATAATGTTTTCGCTTTTCTTTCTGGTACCGTTTGGGGGGGCGGGCG
CAACGCTTTGTCCTGGCAGACATTTCAACTGCTATGGGCTCAACGATCGT
TCCCGTCATGTTTAGGTAACCTCCTCGGCAACAGCCGTGGTGGTTCCCTG
AGCAGTAGTCTGGCTCGCTTGGAATCCCGCGAATTGAATAACGGAAAGAC
CGGCCTTGGTGGGAAGCGTGCCGAGTGTGGTCACGTTTTGGCATCCGGGG
GTTGGCCTTGTGAGATTGCCAACCCCAAGCATCATGATGTGTAGAGATTT
CGAGGGCCGTTGGGTGCAGCATAACCGTTTTGGAAACTACGTAGTCACCG
CGTCGTCGAAGGACTGTCCATCTAAGGCGAGACTGTCCGGCGGTGCTTTC
CTGAAGTGGGAGCCTGGGGTATCAGTGTAGAGCCGATGCTCTCGAATGGG
AACCCCGCGCGGGTCGTACCTGCGGCTGCGGCTGCTGCTGCTGCAACCAG
GCCCTCGAATAGCATCTATGTAGCGGGTGTCATCGTCGCTAGCAGTCCCC
ACGAAGGCATGCTGTTTTGCGGGATACATGCCTGCGCGAGGCTGAGAACG
GGAATGCGGCGTTCGAACGTAGGAGAACTCGCCTTCTTCTCGCTGCCTTA
CTTGTAATAGTCTGCTTGGTCACGTGCGTGCGTGCTTGGTGTTGTTAGGT
GTCTTGTTCGCCCCCCTGTCCACGGCTACCTCATACGGAAACACTTGTAG
CTTTAGGACCACGCATGGGGAAAGGTTGGGAGTAAATCCACATCGTATGT
GTATGTGGCGCTTGGGGAGGTTGTTGTAAGAGCGGAGCGCGCGGACGGGT
ATTAGGACCAAACCCTCCGGGTATTGGCTGTACAATAGACAAACGCATGT
GGTGGGTGTCACATGGGGGCTGCTGCCTGGCCGGCCTGGTATCTGTACGT
GTTTTGAGGTGCTTTGGGGGGTCTCCGCTATTTTGGGAAAATATCTCTCG
AAGGGAAGGGGGGTGACGTTCATGGAAGATTTCTCTTACGGTGGTCCAGG
CGGCTATACACGGGTTGACGGTGTTTCGAACACGCTCAAGAAAACGCCTA
TCTACCATCATGAAAATTTATTTATTTGTTCTCGAATGTATGTGTTACGA
GTGAAACGAAAACGATGAGGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10784:182..2503+

>mRNA_Ecto-sp13_S_contig10784.710.1 ID=mRNA_Ecto-sp13_S_contig10784.710.1|Name=mRNA_Ecto-sp13_S_contig10784.710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10784:182..2503+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGAACGCTGCGGGGGCTAGCGCGCGCTTGGGCGGGGGCGCTTCCGC
AGGGGGCGGCGAGCGCTCGGCTGTTGGTGGGGAAGGCGGCGCAACGGCGG
GGGGCGGGGGGCTGGGTACCAGTGACAGCATTAAGGCCCGTGTGTTGAAA
GGATTCGCGGGGGGTGGGAGAGGCGCTTTCGGGAGGTCGAACGATTCAAC
GCGGGAGGATCGAATATTGGAGGGTATGCCCCCAGACGGGACCGCCGACA
CCGGTGCAGTATGA
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