mRNA_Ecto-sp13_S_contig10780.708.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10780.708.1
Unique NamemRNA_Ecto-sp13_S_contig10780.708.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10780.708.1 vs. uniprot
Match: D8LHW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHW4_ECTSI)

HSP 1 Score: 468 bits (1203), Expect = 1.130e-148
Identity = 239/250 (95.60%), Postives = 241/250 (96.40%), Query Frame = 1 
Query:    1 TFQPTPLGRVASYFYVTHQTMARYNEYLKPTMSDIEIFRLFSLSGEFSHIVVKDEEKLELGRLASRVPIPIKESVDEPTAKVNALLQAFISQLKLEGYALVSDMTYVQQSAARLCRALFEVALKRGWAALAEKTLDLCKMVERRCWLSQSPLRQFRLLPEVIVRKLERKEIAWDRYYDLKPADLGELVKLPRMGKTLHRLVHQFPRVELAASVQPITRALLRVELTITPDFLFDQKVRCLYFVFLTVARD 750
            TFQPTPLGRVASYFYVTHQTMARYNEYLKPTMSDIEIFRLFSLSGEFSHIVVKDEEKLELGRLASRVPIPIKESVDEPTAKVNALLQAFISQLKLEGYALVSDMTYVQQSAARLCRALFEVALKRGWAALAEKTLDLCKMVERRCWLSQSPLRQFRLLPEVIVRKLERKEIAWDRYYDLKPADLGELVKLPRMGKTLHRLVHQFPRVELAASVQPITRALLRVELTITPDFLFDQKV     +F  +  D
Sbjct: 1025 TFQPTPLGRVASYFYVTHQTMARYNEYLKPTMSDIEIFRLFSLSGEFSHIVVKDEEKLELGRLASRVPIPIKESVDEPTAKVNALLQAFISQLKLEGYALVSDMTYVQQSAARLCRALFEVALKRGWAALAEKTLDLCKMVERRCWLSQSPLRQFRLLPEVIVRKLERKEIAWDRYYDLKPADLGELVKLPRMGKTLHRLVHQFPRVELAASVQPITRALLRVELTITPDFLFDQKVHDYAVLFWILVED 1274
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BLAST of mRNA_Ecto-sp13_S_contig10780.708.1 vs. uniprot
Match: A0A7S4DAU8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAU8_HETAK)

HSP 1 Score: 361 bits (927), Expect = 2.240e-112
Identity = 175/237 (73.84%), Postives = 210/237 (88.61%), Query Frame = 1 
Query:    1 TFQPTPLGRVASYFYVTHQTMARYNEYLKPTMSDIEIFRLFSLSGEFSHIVVKDEEKLELGRLASRVPIPIKESVDEPTAKVNALLQAFISQLKLEGYALVSDMTYVQQSAARLCRALFEVALKRGWAALAEKTLDLCKMVERRCWLSQSPLRQFRLLPEVIVRKLERKEIAWDRYYDLKPADLGELVKLPRMGKTLHRLVHQFPRVELAASVQPITRALLRVELTITPDFLFDQKV 711
            T Q T LGRVAS++YV+H ++A YNEYLKP MSDIE+FRLFSLS EF HI V++EEK EL +LA+RVP+P+KE ++EP+AKVN LLQA+IS LKLEG+ALV+DMT+VQQSA R+ RAL E+A KRGWAALA++ L LCKMVERR WLSQ+PLRQFR +PE I+RKLERKE+AW+RYYDLKPADLGELVKLP+MG+TLHRLVHQFPR+EL A VQP+TR LLRV+LT+TPDF +DQKV
Sbjct:  334 TLQGTALGRVASHYYVSHASVATYNEYLKPAMSDIELFRLFSLSAEFKHIHVREEEKAELQKLAARVPVPVKEGMEEPSAKVNVLLQAYISGLKLEGFALVADMTHVQQSAVRILRALTEIAFKRGWAALADRALSLCKMVERRMWLSQTPLRQFRNVPEPILRKLERKELAWNRYYDLKPADLGELVKLPKMGRTLHRLVHQFPRLELGAHVQPLTRQLLRVDLTLTPDFAWDQKV 570
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BLAST of mRNA_Ecto-sp13_S_contig10780.708.1 vs. uniprot
Match: A0A835YNN3_9STRA (Sec63 Brl domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNN3_9STRA)

HSP 1 Score: 362 bits (930), Expect = 1.270e-111
Identity = 177/246 (71.95%), Postives = 213/246 (86.59%), Query Frame = 1 
Query:   13 TPLGRVASYFYVTHQTMARYNEYLKPTMSDIEIFRLFSLSGEFSHIVVKDEEKLELGRLASRVPIPIKESVDEPTAKVNALLQAFISQLKLEGYALVSDMTYVQQSAARLCRALFEVALKRGWAALAEKTLDLCKMVERRCWLSQSPLRQFRLLPEVIVRKLERKEIAWDRYYDLKPADLGELVKLPRMGKTLHRLVHQFPRVELAASVQPITRALLRVELTITPDFLFDQKVRCLYFVFLTVARD 750
            T LGRVASY+Y++HQ+MA YNEYLKPTMSDIE+FRLFSLSGEF HI V++EE+LE+ +LA+RVP+PIKE+V EP+AKVNALLQA+IS LKLEG+ALVSDM YVQQSAAR+ RALFE+ALKRGWAALA++ L LC MVERRCWLSQSPLR F+ +P+ + RKLERK+I+WDRYYDL  ADLGEL+K P+MGK LHRLVHQFPR+EL+A+VQPITR+LLRV+L I PDF +D KV     +F  +  D
Sbjct: 1035 TALGRVASYYYLSHQSMATYNEYLKPTMSDIELFRLFSLSGEFKHIHVREEERLEVQKLAARVPVPIKEAVTEPSAKVNALLQAYISGLKLEGFALVSDMVYVQQSAARILRALFEIALKRGWAALADRALTLCLMVERRCWLSQSPLRHFKGVPDALARKLERKDISWDRYYDLSAADLGELIKNPKMGKQLHRLVHQFPRLELSAAVQPITRSLLRVDLRIQPDFRYDVKVHDTSLLFHVLVED 1280
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BLAST of mRNA_Ecto-sp13_S_contig10780.708.1 vs. uniprot
Match: A0A2L0AZ32_9COLE (Lethal-3 72Ab (Fragment) n=1 Tax=Noteridae sp. CSR039 TaxID=2055466 RepID=A0A2L0AZ32_9COLE)

HSP 1 Score: 333 bits (853), Expect = 6.370e-111
Identity = 157/236 (66.53%), Postives = 201/236 (85.17%), Query Frame = 1 
Query:    4 FQPTPLGRVASYFYVTHQTMARYNEYLKPTMSDIEIFRLFSLSGEFSHIVVKDEEKLELGRLASRVPIPIKESVDEPTAKVNALLQAFISQLKLEGYALVSDMTYVQQSAARLCRALFEVALKRGWAALAEKTLDLCKMVERRCWLSQSPLRQFRLLPEVIVRKLERKEIAWDRYYDLKPADLGELVKLPRMGKTLHRLVHQFPRVELAASVQPITRALLRVELTITPDFLFDQKV 711
            FQ T LGR+AS++Y +H T++ YN+ LKPT+S+IE+FR+FSLSGEF ++ V+DEEKLEL +L  RVPIPIKES++EP+AKVN LLQA+ISQLKL+G+AL+SDM YV QSAARL RA+FE+ L RGWA LA+K L LCKM++RR W S SPLRQFR +PE IV+K+E+K   W+R YDL PA++GELV++P++GKT+H+ VHQFPR+ELAA VQPITR+ LRVELTITPDF +D K+
Sbjct:   88 FQVTELGRIASHYYCSHDTVSTYNQLLKPTLSEIELFRVFSLSGEFRNVTVRDEEKLELQKLMERVPIPIKESIEEPSAKVNVLLQAYISQLKLDGFALMSDMVYVTQSAARLVRAIFEMVLARGWAQLADKALALCKMIDRRMWQSMSPLRQFRKMPEEIVKKIEKKNFPWERLYDLGPAEIGELVRVPKLGKTIHKYVHQFPRLELAAHVQPITRSTLRVELTITPDFQWDDKL 323
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BLAST of mRNA_Ecto-sp13_S_contig10780.708.1 vs. uniprot
Match: F0Y9C7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9C7_AURAN)

HSP 1 Score: 360 bits (924), Expect = 8.090e-111
Identity = 175/233 (75.11%), Postives = 209/233 (89.70%), Query Frame = 1 
Query:   13 TPLGRVASYFYVTHQTMARYNEYLKPTMSDIEIFRLFSLSGEFSHIVVKDEEKLELGRLASRVPIPIKESVDEPTAKVNALLQAFISQLKLEGYALVSDMTYVQQSAARLCRALFEVALKRGWAALAEKTLDLCKMVERRCWLSQSPLRQFRLLPEVIVRKLERKEIAWDRYYDLKPADLGELVKLPRMGKTLHRLVHQFPRVELAASVQPITRALLRVELTITPDFLFDQKV 711
            T LGRVA+++YV++ +MA YNE+LKPT+SDIE+FRLFS SGEF HI V++EEKLEL +LA+RVPIPIKES++EP+AKVNALLQA+IS L LEG+ALV+DMT+V+QSAARLCRALFE+ALKR WA +A K L LCKMVER+ WLSQSPLRQF+ +PE IVRKLE+KEI WDRYYDLKP DL ELVKLP+MGKTLHRLVHQ PRVEL+A VQP++R LL+V+LTITPDF+FD KV
Sbjct:  999 TALGRVAAHYYVSYASMATYNEHLKPTLSDIELFRLFSFSGEFKHIHVREEEKLELAKLATRVPIPIKESMEEPSAKVNALLQAYISNLSLEGFALVADMTFVRQSAARLCRALFEIALKRKWAGVAAKALTLCKMVERKLWLSQSPLRQFKGVPETIVRKLEKKEIPWDRYYDLKPQDLAELVKLPKMGKTLHRLVHQVPRVELSAHVQPVSRGLLKVDLTITPDFIFDPKV 1231
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BLAST of mRNA_Ecto-sp13_S_contig10780.708.1 vs. uniprot
Match: A0A7S2BE45_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BE45_9STRA)

HSP 1 Score: 358 bits (919), Expect = 3.730e-110
Identity = 176/250 (70.40%), Postives = 213/250 (85.20%), Query Frame = 1 
Query:    1 TFQPTPLGRVASYFYVTHQTMARYNEYLKPTMSDIEIFRLFSLSGEFSHIVVKDEEKLELGRLASRVPIPIKESVDEPTAKVNALLQAFISQLKLEGYALVSDMTYVQQSAARLCRALFEVALKRGWAALAEKTLDLCKMVERRCWLSQSPLRQFRLLPEVIVRKLERKEIAWDRYYDLKPADLGELVKLPRMGKTLHRLVHQFPRVELAASVQPITRALLRVELTITPDFLFDQKVRCLYFVFLTVARD 750
            + Q T LGRVAS +YV H++MA YNEYLKP+MSDIE+FRLFS+SGEF +I V++EEKLEL +L+ RVPIP+KES+DEP+AKVN LLQA++S LKLEG+ALV+D+TYV+QSA RL R L E+ALKRGWAALA+K L+LCKMVERR WLSQSPLRQF+ LPE + RKLE+K+I W+RYYDLKPADLGELVK+P+MGK LH  VH+FPR+EL+A VQPITRALL+VELTITPDF FD KV     +F  +  D
Sbjct:  886 SIQVTALGRVASAYYVGHESMATYNEYLKPSMSDIELFRLFSMSGEFQNIHVREEEKLELAKLSVRVPIPVKESIDEPSAKVNVLLQAYMSNLKLEGFALVADLTYVRQSANRLMRCLLELALKRGWAALADKALNLCKMVERRMWLSQSPLRQFKALPESLARKLEKKDIPWERYYDLKPADLGELVKVPKMGKPLHAFVHKFPRLELSAHVQPITRALLKVELTITPDFEFDPKVHDYALLFHVLVED 1135
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BLAST of mRNA_Ecto-sp13_S_contig10780.708.1 vs. uniprot
Match: A0A2L0AZM4_9COLE (Lethal-3 72Ab (Fragment) n=6 Tax=Endopterygota TaxID=33392 RepID=A0A2L0AZM4_9COLE)

HSP 1 Score: 330 bits (846), Expect = 7.570e-110
Identity = 151/236 (63.98%), Postives = 200/236 (84.75%), Query Frame = 1 
Query:    4 FQPTPLGRVASYFYVTHQTMARYNEYLKPTMSDIEIFRLFSLSGEFSHIVVKDEEKLELGRLASRVPIPIKESVDEPTAKVNALLQAFISQLKLEGYALVSDMTYVQQSAARLCRALFEVALKRGWAALAEKTLDLCKMVERRCWLSQSPLRQFRLLPEVIVRKLERKEIAWDRYYDLKPADLGELVKLPRMGKTLHRLVHQFPRVELAASVQPITRALLRVELTITPDFLFDQKV 711
            FQ T +GR+AS++Y TH+TM  YN+ LKPT+S+IE+FR+FSLS EF HI V++EEKLEL +L  RVPIPIKES++EP+AKVN LLQA+ISQLKLEG+AL+SDM ++ QSA+RL RA+FE+ L RGWA LA+KTL LCKM++RR W S SPLRQFR +PE IV+K+E+K   W+R YDL P+++GEL+++P++GKT+H+ VHQFP++EL+  +QPITR+ LRVELTITPDF +D K+
Sbjct:   89 FQVTEIGRIASHYYCTHETMLNYNQLLKPTLSEIELFRVFSLSSEFKHITVREEEKLELQKLMERVPIPIKESIEEPSAKVNVLLQAYISQLKLEGFALMSDMVFITQSASRLMRAIFEIVLHRGWAQLADKTLALCKMIDRRMWQSMSPLRQFRKMPEEIVKKIEKKNFPWERLYDLGPSEIGELIRVPKLGKTIHKYVHQFPKLELSTHIQPITRSTLRVELTITPDFQWDDKL 324
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BLAST of mRNA_Ecto-sp13_S_contig10780.708.1 vs. uniprot
Match: A0A2L0AZB0_9COLE (Lethal-3 72Ab (Fragment) n=3 Tax=Polyphaga TaxID=41084 RepID=A0A2L0AZB0_9COLE)

HSP 1 Score: 329 bits (844), Expect = 1.470e-109
Identity = 152/236 (64.41%), Postives = 201/236 (85.17%), Query Frame = 1 
Query:    4 FQPTPLGRVASYFYVTHQTMARYNEYLKPTMSDIEIFRLFSLSGEFSHIVVKDEEKLELGRLASRVPIPIKESVDEPTAKVNALLQAFISQLKLEGYALVSDMTYVQQSAARLCRALFEVALKRGWAALAEKTLDLCKMVERRCWLSQSPLRQFRLLPEVIVRKLERKEIAWDRYYDLKPADLGELVKLPRMGKTLHRLVHQFPRVELAASVQPITRALLRVELTITPDFLFDQKV 711
            FQ   LGR+AS++Y TH+TM+ YN+ LK T+S+IE+FR+FSLSGEF HI V+ EEK+EL +L  RVPIPIKES++EP+AKVN LLQA+ISQLKLEG+AL+SDM ++QQSA+RL RA+FE+ L RGWA LA+KTL LCKM++RR W S SPLRQFR +PE IV+K+E+K   W+R YDLKP ++GEL+++PR+GKT+H+ VHQFP+++L+  +QPITR+ LRVELTITPDF +D+K+
Sbjct:   88 FQVIELGRIASHYYCTHETMSTYNQLLKYTLSEIELFRVFSLSGEFRHIAVRAEEKMELQKLMERVPIPIKESIEEPSAKVNVLLQAYISQLKLEGFALMSDMIFIQQSASRLMRAIFEIVLYRGWAQLADKTLSLCKMIDRRMWQSMSPLRQFRKMPEEIVKKIEKKNFPWERLYDLKPNEIGELIRVPRLGKTIHKYVHQFPKLDLSTHIQPITRSTLRVELTITPDFQWDEKL 323
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10780.708.1 vs. uniprot
Match: A0A2L0AZ57_9COLE (Lethal-3 72Ab (Fragment) n=1 Tax=Clambus sp. CSR082 TaxID=2055362 RepID=A0A2L0AZ57_9COLE)

HSP 1 Score: 328 bits (842), Expect = 2.960e-109
Identity = 154/236 (65.25%), Postives = 199/236 (84.32%), Query Frame = 1 
Query:    4 FQPTPLGRVASYFYVTHQTMARYNEYLKPTMSDIEIFRLFSLSGEFSHIVVKDEEKLELGRLASRVPIPIKESVDEPTAKVNALLQAFISQLKLEGYALVSDMTYVQQSAARLCRALFEVALKRGWAALAEKTLDLCKMVERRCWLSQSPLRQFRLLPEVIVRKLERKEIAWDRYYDLKPADLGELVKLPRMGKTLHRLVHQFPRVELAASVQPITRALLRVELTITPDFLFDQKV 711
            FQ T +GR+AS+FY TH+TM+ YN+ LKPT+S+IE+FR+FSLSGEF +I V++EEKLEL +L  RVPIPIKES++EP+AKVN LLQA+ISQLKLEG+AL+SDM YV QSAARL RA+FE+ L RGWA LA+KTL L KM+ RR W S SPLRQFR +PE IV+K+E+K   W+R YDL P ++GEL+++P++GKT+H+ VHQFP++ELA  +QPITR+ LRVELTI PDF +D+K+
Sbjct:   88 FQVTEIGRIASHFYCTHETMSTYNQLLKPTLSEIELFRVFSLSGEFKNITVREEEKLELQKLMERVPIPIKESIEEPSAKVNVLLQAYISQLKLEGFALMSDMVYVTQSAARLMRAIFEIVLYRGWAQLADKTLSLSKMIYRRMWQSMSPLRQFRKMPEEIVKKIEKKNFPWERLYDLAPNEIGELIRVPKLGKTIHKYVHQFPKLELATHIQPITRSTLRVELTINPDFQWDEKL 323
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BLAST of mRNA_Ecto-sp13_S_contig10780.708.1 vs. uniprot
Match: A0A8J2SIM1_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SIM1_9STRA)

HSP 1 Score: 354 bits (908), Expect = 1.150e-108
Identity = 174/246 (70.73%), Postives = 207/246 (84.15%), Query Frame = 1 
Query:   13 TPLGRVASYFYVTHQTMARYNEYLKPTMSDIEIFRLFSLSGEFSHIVVKDEEKLELGRLASRVPIPIKESVDEPTAKVNALLQAFISQLKLEGYALVSDMTYVQQSAARLCRALFEVALKRGWAALAEKTLDLCKMVERRCWLSQSPLRQFRLLPEVIVRKLERKEIAWDRYYDLKPADLGELVKLPRMGKTLHRLVHQFPRVELAASVQPITRALLRVELTITPDFLFDQKVRCLYFVFLTVARD 750
            T LGRVA+++YV+ Q+MA YNE+LKP +SD+E+FRLFS SGEF H+ V+ EEKLEL +LA+RVPIPIKE +DEP+AKVNALLQA+IS L LEG+ALV+DMT+V+QSAARLCRALFEVALKRGWAA A+K L LCKMVERR W SQ PLRQFR +PE I RKLE+KEIAWDRYYDLKP DL ELVKLP+MGKTLHRLVHQ PRVELAA V+P++R LL VE+ ++PDF F+ KV     +F  +  D
Sbjct: 1035 TALGRVAAHYYVSSQSMATYNEHLKPNLSDVELFRLFSFSGEFRHVHVRAEEKLELAKLATRVPIPIKEGMDEPSAKVNALLQAYISNLGLEGFALVADMTFVRQSAARLCRALFEVALKRGWAAAADKALTLCKMVERRLWPSQCPLRQFRGVPETIARKLEKKEIAWDRYYDLKPGDLAELVKLPKMGKTLHRLVHQIPRVELAAHVRPVSRGLLHVEVVVSPDFQFEAKVHDYAQIFHVIVED 1280
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10780.708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHW4_ECTSI1.130e-14895.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4DAU8_HETAK2.240e-11273.84Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YNN3_9STRA1.270e-11171.95Sec63 Brl domain-containing protein n=1 Tax=Tribon... [more]
A0A2L0AZ32_9COLE6.370e-11166.53Lethal-3 72Ab (Fragment) n=1 Tax=Noteridae sp. CSR... [more]
F0Y9C7_AURAN8.090e-11175.11Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2BE45_9STRA3.730e-11070.40Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A2L0AZM4_9COLE7.570e-11063.98Lethal-3 72Ab (Fragment) n=6 Tax=Endopterygota Tax... [more]
A0A2L0AZB0_9COLE1.470e-10964.41Lethal-3 72Ab (Fragment) n=3 Tax=Polyphaga TaxID=4... [more]
A0A2L0AZ57_9COLE2.960e-10965.25Lethal-3 72Ab (Fragment) n=1 Tax=Clambus sp. CSR08... [more]
A0A8J2SIM1_9STRA1.150e-10870.73Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10780contigEcto-sp13_S_contig10780:2601..5299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score471.1
Seed ortholog evalue3.3e-130
Seed eggNOG ortholog2880.D8LHW4
Preferred namebrr2
Model size750
KEGG koko:K12854
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000388,GO:0000393,GO:0000398,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0032991,GO:0034622,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0065003,GO:0070035,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:0140098,GO:1901360,GO:1990904
Exons5
EggNOG free text desc.response to ionizing radiation
EggNOG OGsCOG1204@1,KOG0951@2759
EC3.6.4.13
Cds size750
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462554.7847555-CDS-Ecto-sp13_S_contig10780:2600..27161681462554.7847555-CDS-Ecto-sp13_S_contig10780:2600..2716Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10780 2601..2716 +
1681462554.7979348-CDS-Ecto-sp13_S_contig10780:3600..37271681462554.7979348-CDS-Ecto-sp13_S_contig10780:3600..3727Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10780 3601..3727 +
1681462554.8073215-CDS-Ecto-sp13_S_contig10780:4171..43591681462554.8073215-CDS-Ecto-sp13_S_contig10780:4171..4359Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10780 4172..4359 +
1681462554.8165538-CDS-Ecto-sp13_S_contig10780:4802..48951681462554.8165538-CDS-Ecto-sp13_S_contig10780:4802..4895Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10780 4803..4895 +
1681462554.8274515-CDS-Ecto-sp13_S_contig10780:5073..52991681462554.8274515-CDS-Ecto-sp13_S_contig10780:5073..5299Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10780 5074..5299 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10780.708.1prot_Ecto-sp13_S_contig10780.708.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10780 2601..5299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10780.708.1

>prot_Ecto-sp13_S_contig10780.708.1 ID=prot_Ecto-sp13_S_contig10780.708.1|Name=mRNA_Ecto-sp13_S_contig10780.708.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=250bp
TFQPTPLGRVASYFYVTHQTMARYNEYLKPTMSDIEIFRLFSLSGEFSHI
VVKDEEKLELGRLASRVPIPIKESVDEPTAKVNALLQAFISQLKLEGYAL
VSDMTYVQQSAARLCRALFEVALKRGWAALAEKTLDLCKMVERRCWLSQS
PLRQFRLLPEVIVRKLERKEIAWDRYYDLKPADLGELVKLPRMGKTLHRL
VHQFPRVELAASVQPITRALLRVELTITPDFLFDQKVRCLYFVFLTVARD
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mRNA from alignment at Ecto-sp13_S_contig10780:2601..5299+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10780.708.1 ID=mRNA_Ecto-sp13_S_contig10780.708.1|Name=mRNA_Ecto-sp13_S_contig10780.708.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2699bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10780:2601..5299+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCTTCCAGCCGACTCCTCTCGGAAGGGTGGCGTCGTACTTCTACGTGAC
CCACCAGACCATGGCCCGGTACAACGAGTACCTCAAGCCCACCATGAGTG
ACATCGAGATTTTCAGGTGCGTTGTGGTCGTCGCCAGGCGTGTGTTTTTT
TTTCTTGCTGCTATCGACGCAGGTCGACGAGGCAATCACAAATACTCGTC
GACATTTGTTTTTTGCAACGGTTTGTCGCGTTAGGCATGAGCGGGGAAAG
TGATGTGCGTGGACCATGCCGTTGTTACGCGATTGGTAAATACATGGTAA
GTTTAAGCGCTATCCACTGACCGGCTTCCGTGGCTCGATTACTCCATCGA
GAGACCACCACTGCTGACAAGAGCTGATTCCTTAGACCTAAGAACTATCA
GCGGCTTCGACGCGCTCTCTTGGTCCTTGAGCGGTCGATCGAGCTATGGA
AGGCGGTGTCCGGGAAGAGGGCGGTCGCTTCCACGACTACGTCGTGTACT
CAAAGCGTGGTTGGTGTTTTCATCGGATGAATGCAATCATCAATCATGAT
GCACGATGTGCCTGCGACTCGCGGGACAGGACCAGTTGCGTATGTGCGTA
TGACGTTGAAGCAAACGTTGCTTCCCAGGCACCCCCGTTCCAGCAGTATG
AACACCTGGCCTGAAGGGAGTACTGTAACGTTTCCCGACACACAGCGGCG
TTTTTTGTGCGAAAGGATTGTTGTGGCGCGTTGTTGTCTTTCCAAAGGGA
ACCCCGTGAATCGGACATCCCCATCAATTTGACTCCGATGAGAAGGTGTG
CACTGGACTCCATAGCCCCACCCTTGCTCTGAGCTCCTCCCGTACGCATC
ATGAACACCGTGCCATGCTGATTGTCGCACAGGAGAAGTTTTCCCGAATC
TTTGTGAATCAACGTGGAAGAGGATCCCTCCGTTTCACCCCCCACCCCCC
CACCCCTCAAATACCGATTTTCTCGGACCCTTCCCCGCCGTGATCGCCAG
GCTCTTCTCTCTGTCGGGAGAGTTCTCGCACATCGTCGTGAAGGACGAGG
AGAAGCTTGAGCTTGGCAGGCTGGCAAGCAGGGTGCCCATTCCGATTAAG
GAGAGCGTGGACGAGCCCACGGCAAAGGTGCTACGGGGTTGAACCGTTGA
ACGACGTAGATCTGTGTTTGTTTGCTGGGTACGACCGCCTTAGGAAAGGA
GGCTTCTTTGTTACCGTGGGATCGTGGTCGCTTTGTAACCGCGGCGGCCA
CACGCCTGTAACCGCCGCCCTTGTCAAAGTAGAAACACGCCGCGTTTTTG
ATTGAACGCACGCGTGCAAGCCAAGGGAGCGCCTACCGCATTGGTGCATT
CGACAGTCCTCAATCACGCTGTATACTTGTAACCGCCGCAACTTTCAAAC
AACACGCCACCTTTTCCCGGTTGAAACCAACCCTTGCCGGCGTACACCAC
AAGTCGGAGCTTCCGCGTCGGCACGACTGCCTTACCCAGCCTTGTGTGTT
ACCAGTGCCCCCATTAATCCTTGTGTCCCTGCGCGTACCCGCCGCATGTG
AAAACACGCCCGTCTTTTCAGGTGAACGCCCTCCTGCAGGCTTTCATCAG
CCAGCTCAAGCTCGAGGGTTATGCTCTAGTATCGGACATGACGTACGTGC
AGCAGTCGGCGGCGCGGCTTTGCCGGGCTCTGTTCGAGGTTGCCCTGAAG
AGGGGGTGGGCTGCCCTGGCCGAGAAGACGCTGGACCTGTGCAAGATGGT
GGAGAGGAGGTGACTGTGATTGATGCAAGGCTCTTGTGGTTTGGTTGCTG
TTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGGTTGTTGTTGTTGTTGT
TGGTTGTTGTTGTTGTTGTACAAGACTAGGGATATGCGATAGGGGATACG
AAAGGCTTTTCACGGAGTTTGCGCTAGCTATATGTAGTTGCGGTAGCCTG
TACGATACTTTTTCTGCTCGGTGGTGCAGTTCCTCCCCCCTCGTCAATCC
TGCATGTTCACCACGTTTTCAGCGTTCTTCCTGCTCTCTTGATGCTAACA
TTCCCACCGCCGCCTTTCTCGCTGTCGTCATCCATGCATTCGCTTTGTCG
TGATGGCTGCGGTGGAATCTGTCGTCATTTTCATCCACACTTGTGCTACA
CATCTGATATCATCACTGACTCCTTTTCTACCCTTTGTTATTTTTCCCCC
AGGTGCTGGTTGAGCCAGAGCCCTCTCCGCCAGTTCCGCCTCCTGCCCGA
GGTGATCGTGCGCAAGCTAGAGAGGAAGGAGATCGCGTGGGACAGGTAAT
ATCACACGATTTATGCCACCATGCTGAACGGATATTTCTGTGACTGCTCT
CGAAGTACACCGGAATGTTCCACTTTCCCACTGAATATCAGGTGCGATTT
GTAGGTATGGACTTGTGTCGAAAGCGCACTGTGTCACTCTTTGCGGCAAT
GTTTGACACGAACATGAACACAGGTACTACGACCTGAAGCCGGCCGACCT
GGGTGAGCTGGTGAAGCTTCCTAGGATGGGCAAGACGCTTCACCGTCTGG
TGCACCAGTTCCCACGTGTCGAACTAGCCGCCAGCGTGCAGCCGATCACG
CGGGCGCTGCTGAGGGTGGAGCTCACCATCACGCCGGACTTCCTCTTCGA
CCAGAAGGTACGCTGTTTGTATTTTGTTTTTTTAACCGTTGCTCGCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10780:2601..5299+

>mRNA_Ecto-sp13_S_contig10780.708.1 ID=mRNA_Ecto-sp13_S_contig10780.708.1|Name=mRNA_Ecto-sp13_S_contig10780.708.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=750bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10780:2601..5299+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCTTCCAGCCGACTCCTCTCGGAAGGGTGGCGTCGTACTTCTACGTGAC
CCACCAGACCATGGCCCGGTACAACGAGTACCTCAAGCCCACCATGAGTG
ACATCGAGATTTTCAGGCTCTTCTCTCTGTCGGGAGAGTTCTCGCACATC
GTCGTGAAGGACGAGGAGAAGCTTGAGCTTGGCAGGCTGGCAAGCAGGGT
GCCCATTCCGATTAAGGAGAGCGTGGACGAGCCCACGGCAAAGGTGAACG
CCCTCCTGCAGGCTTTCATCAGCCAGCTCAAGCTCGAGGGTTATGCTCTA
GTATCGGACATGACGTACGTGCAGCAGTCGGCGGCGCGGCTTTGCCGGGC
TCTGTTCGAGGTTGCCCTGAAGAGGGGGTGGGCTGCCCTGGCCGAGAAGA
CGCTGGACCTGTGCAAGATGGTGGAGAGGAGGTGCTGGTTGAGCCAGAGC
CCTCTCCGCCAGTTCCGCCTCCTGCCCGAGGTGATCGTGCGCAAGCTAGA
GAGGAAGGAGATCGCGTGGGACAGGTACTACGACCTGAAGCCGGCCGACC
TGGGTGAGCTGGTGAAGCTTCCTAGGATGGGCAAGACGCTTCACCGTCTG
GTGCACCAGTTCCCACGTGTCGAACTAGCCGCCAGCGTGCAGCCGATCAC
GCGGGCGCTGCTGAGGGTGGAGCTCACCATCACGCCGGACTTCCTCTTCG
ACCAGAAGGTACGCTGTTTGTATTTTGTTTTTTTAACCGTTGCTCGCGAC
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