mRNA_Ecto-sp13_S_contig10780.707.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10780.707.1
Unique NamemRNA_Ecto-sp13_S_contig10780.707.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10780.707.1 vs. uniprot
Match: D8LHW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHW4_ECTSI)

HSP 1 Score: 238 bits (606), Expect = 2.440e-70
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 1 
Query:    1 QDVLGYSFAIHHAGLPKGDRQLVEDLFQDKHIQVLVSTATLAWGVNLPAHTVILKGTQMYSPEKGKWVELSPLDILQMMGRAGRPQYDSEGEAIVITQHSELQYYLSLNNQQLPIESQ 354
            +DVLGYSFAIHHAGLPKGDRQLVEDLFQDKHIQVLVSTATLAWGVNLPAHTVILKGTQMYSPEKGKWVELSPLDILQMMGRAGRPQYDSEGEAIVITQHSELQYYLSLNNQQLPIESQ
Sbjct:  822 KDVLGYSFAIHHAGLPKGDRQLVEDLFQDKHIQVLVSTATLAWGVNLPAHTVILKGTQMYSPEKGKWVELSPLDILQMMGRAGRPQYDSEGEAIVITQHSELQYYLSLNNQQLPIESQ 939
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10780.707.1 vs. uniprot
Match: A0A7S2FXR7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FXR7_9STRA)

HSP 1 Score: 201 bits (510), Expect = 1.750e-64
Identity = 94/119 (78.99%), Postives = 107/119 (89.92%), Query Frame = 1 
Query:    1 QDVLGYSFAIHHAGLPKGDRQLVEDLFQDKHIQVLVSTATLAWGVNLPAHTVILKGTQMYSPEKGKWVELSPLDILQMMGRAGRPQYDSEGEAIVITQHSELQYYLSLNNQQLPIESQV 357
            +D+L Y FAIHHAG+ + DR +VEDL+ DKHIQVL  TATLAWGVNLPAHTVI+KGTQMYSPEKGKW ELSPLDI+QM+GRAGRP +D+EGE I+ITQHSELQYYLSL NQQLPIESQ+
Sbjct:   19 KDLLAYGFAIHHAGMTRDDRNMVEDLYSDKHIQVLCCTATLAWGVNLPAHTVIIKGTQMYSPEKGKWCELSPLDIMQMLGRAGRPGFDTEGEGIIITQHSELQYYLSLMNQQLPIESQL 137
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10780.707.1 vs. uniprot
Match: U6KIH4_9EIME (Sec63 domain-containing DEAD/DEAH box helicase, putative n=1 Tax=Eimeria mitis TaxID=44415 RepID=U6KIH4_9EIME)

HSP 1 Score: 204 bits (519), Expect = 9.060e-62
Identity = 97/119 (81.51%), Postives = 110/119 (92.44%), Query Frame = 1 
Query:    1 QDVLGYSFAIHHAGLPKGDRQLVEDLFQDKHIQVLVSTATLAWGVNLPAHTVILKGTQMYSPEKGKWVELSPLDILQMMGRAGRPQYDSEGEAIVITQHSELQYYLSLNNQQLPIESQV 357
            +D+L Y FA+HHAGLP+ DR+LVEDLF D+HIQVLVSTATLAWGVNLPAHTVI+KGTQ+Y PEKG W ELSP+DILQMMGRAGRPQYD+ G AI+ITQHSELQ+YLSLNNQQLPIESQ+
Sbjct:  292 KDLLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLPEKGAWSELSPMDILQMMGRAGRPQYDTGGHAILITQHSELQFYLSLNNQQLPIESQM 410
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10780.707.1 vs. uniprot
Match: A0A7S4JMR8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4JMR8_9EUKA)

HSP 1 Score: 194 bits (494), Expect = 1.120e-60
Identity = 92/118 (77.97%), Postives = 109/118 (92.37%), Query Frame = 1 
Query:    1 QDVLGYSFAIHHAGLPKGDRQLVEDLFQDKHIQVLVSTATLAWGVNLPAHTVILKGTQMYSPEKGKWVELSPLDILQMMGRAGRPQYDSEGEAIVITQHSELQYYLSLNNQQLPIESQ 354
            +D+L Y FAIHHAG+ K DR LVEDLF+++ IQVLVST+TLAWGVNLPAHTVI+KGTQ+YSPEKG+W+ELSPLD++QMMGRAGRPQ+D++GE I+IT HSELQYYLSL NQQLPIESQ
Sbjct:  106 KDLLPYGFAIHHAGMNKLDRALVEDLFRNQRIQVLVSTSTLAWGVNLPAHTVIIKGTQVYSPEKGRWIELSPLDVMQMMGRAGRPQFDTKGEGIMITTHSELQYYLSLLNQQLPIESQ 223
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10780.707.1 vs. uniprot
Match: A0A7S4DAU8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAU8_HETAK)

HSP 1 Score: 210 bits (534), Expect = 1.200e-60
Identity = 99/119 (83.19%), Postives = 110/119 (92.44%), Query Frame = 1 
Query:    1 QDVLGYSFAIHHAGLPKGDRQLVEDLFQDKHIQVLVSTATLAWGVNLPAHTVILKGTQMYSPEKGKWVELSPLDILQMMGRAGRPQYDSEGEAIVITQHSELQYYLSLNNQQLPIESQV 357
            +DVL Y FA+HHAGL +GDR LVEDLF DKH+QVLVSTATLAWGVNLPAHTVILKGTQMY P +GKWVELSPLD+LQM+GRAGRPQYD  GEAI++TQHSELQYYLSLNNQQLP+ESQ+
Sbjct:  133 KDVLPYGFAVHHAGLQRGDRNLVEDLFADKHVQVLVSTATLAWGVNLPAHTVILKGTQMYHPGQGKWVELSPLDVLQMVGRAGRPQYDKTGEAILLTQHSELQYYLSLNNQQLPVESQL 251
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10780.707.1 vs. uniprot
Match: A0A835YNN3_9STRA (Sec63 Brl domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNN3_9STRA)

HSP 1 Score: 210 bits (534), Expect = 1.210e-60
Identity = 98/118 (83.05%), Postives = 109/118 (92.37%), Query Frame = 1 
Query:    1 QDVLGYSFAIHHAGLPKGDRQLVEDLFQDKHIQVLVSTATLAWGVNLPAHTVILKGTQMYSPEKGKWVELSPLDILQMMGRAGRPQYDSEGEAIVITQHSELQYYLSLNNQQLPIESQ 354
            +D+L + FA+HHAG+P+ DR LVEDLF++KH QVLVSTATLAWGVNLPAHTVILKGTQMYSPEKG WVELSPLD+LQMMGRAGRPQYDSE   I++TQHSELQYYLSLNNQQLPIESQ
Sbjct:  828 KDILPFGFAVHHAGMPRADRNLVEDLFENKHCQVLVSTATLAWGVNLPAHTVILKGTQMYSPEKGAWVELSPLDVLQMMGRAGRPQYDSEASGIILTQHSELQYYLSLNNQQLPIESQ 945
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10780.707.1 vs. uniprot
Match: UPI0005281E46 (U5 small nuclear ribonucleoprotein 200 kDa helicase-like n=1 Tax=Pterocles gutturalis TaxID=240206 RepID=UPI0005281E46)

HSP 1 Score: 196 bits (498), Expect = 9.710e-60
Identity = 94/119 (78.99%), Postives = 106/119 (89.08%), Query Frame = 1 
Query:    1 QDVLGYSFAIHHAGLPKGDRQLVEDLFQDKHIQVLVSTATLAWGVNLPAHTVILKGTQMYSPEKGKWVELSPLDILQMMGRAGRPQYDSEGEAIVITQHSELQYYLSLNNQQLPIESQV 357
            +D+L Y FAIHHAG+ + DR LVEDLF DKHIQVLVSTATLAWGVNLPAHTVI+KGTQ+YSPEKG+W EL  LDILQM+GRAGRPQYD++GE I+IT H ELQYYLSL NQQLPIESQ+
Sbjct:   15 KDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQM 133
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10780.707.1 vs. uniprot
Match: A0A226MFP6_COLVI (Uncharacterized protein (Fragment) n=1 Tax=Colinus virginianus TaxID=9014 RepID=A0A226MFP6_COLVI)

HSP 1 Score: 201 bits (510), Expect = 1.230e-59
Identity = 95/119 (79.83%), Postives = 108/119 (90.76%), Query Frame = 1 
Query:    1 QDVLGYSFAIHHAGLPKGDRQLVEDLFQDKHIQVLVSTATLAWGVNLPAHTVILKGTQMYSPEKGKWVELSPLDILQMMGRAGRPQYDSEGEAIVITQHSELQYYLSLNNQQLPIESQV 357
            +++L Y FA+HHAGL + DR+LVEDLF D+HIQVLVSTATLAWGVNLPAHTVI+KG+Q+YSPEKG W ELSPLD+LQM+GRAGRPQYD  G AI ITQHSELQYYLSLNNQQLPIESQ+
Sbjct:  180 KELLPYGFAVHHAGLARTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIVKGSQIYSPEKGAWTELSPLDVLQMLGRAGRPQYDKTGHAIFITQHSELQYYLSLNNQQLPIESQL 298
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10780.707.1 vs. uniprot
Match: A0A7S3JHU5_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3JHU5_9SPIT)

HSP 1 Score: 190 bits (482), Expect = 1.420e-59
Identity = 89/118 (75.42%), Postives = 102/118 (86.44%), Query Frame = 1 
Query:    1 QDVLGYSFAIHHAGLPKGDRQLVEDLFQDKHIQVLVSTATLAWGVNLPAHTVILKGTQMYSPEKGKWVELSPLDILQMMGRAGRPQYDSEGEAIVITQHSELQYYLSLNNQQLPIESQ 354
            +D+L +   IHHAGLP+ DR+++EDLF  KHIQ+LVSTATLAWGVNLPAHTVI+KGTQ+Y+ EKGKW ELSP DILQM+GRAGRPQYD  GE I+IT H ELQYYLSLNN QLPIESQ
Sbjct:   35 KDLLPFGIGIHHAGLPRDDRKMIEDLFARKHIQLLVSTATLAWGVNLPAHTVIIKGTQIYNAEKGKWTELSPQDILQMLGRAGRPQYDITGEGIIITSHQELQYYLSLNNMQLPIESQ 152
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10780.707.1 vs. uniprot
Match: A0A086LKX4_TOXGO (Putative activating signal cointegrator 1 complex subunit 3 family 1 ASCC3L1 (Fragment) n=2 Tax=Toxoplasma gondii TaxID=5811 RepID=A0A086LKX4_TOXGO)

HSP 1 Score: 205 bits (522), Expect = 4.690e-59
Identity = 96/119 (80.67%), Postives = 110/119 (92.44%), Query Frame = 1 
Query:    1 QDVLGYSFAIHHAGLPKGDRQLVEDLFQDKHIQVLVSTATLAWGVNLPAHTVILKGTQMYSPEKGKWVELSPLDILQMMGRAGRPQYDSEGEAIVITQHSELQYYLSLNNQQLPIESQV 357
            +++L Y FA+HHAGLP+ DR+LVEDLF D+HIQVLVSTATLAWGVNLPAHTVI+KGTQ+Y PEKG W ELSP+D+LQMMGRAGRPQYD+ G AI+ITQHSELQYYLSLNNQQLPIESQ+
Sbjct:  634 KELLPYGFAVHHAGLPRTDRKLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYLPEKGAWAELSPMDVLQMMGRAGRPQYDTSGHAILITQHSELQYYLSLNNQQLPIESQM 752
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10780.707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHW4_ECTSI2.440e-7099.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2FXR7_9STRA1.750e-6478.99Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
U6KIH4_9EIME9.060e-6281.51Sec63 domain-containing DEAD/DEAH box helicase, pu... [more]
A0A7S4JMR8_9EUKA1.120e-6077.97Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
A0A7S4DAU8_HETAK1.200e-6083.19Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YNN3_9STRA1.210e-6083.05Sec63 Brl domain-containing protein n=1 Tax=Tribon... [more]
UPI0005281E469.710e-6078.99U5 small nuclear ribonucleoprotein 200 kDa helicas... [more]
A0A226MFP6_COLVI1.230e-5979.83Uncharacterized protein (Fragment) n=1 Tax=Colinus... [more]
A0A7S3JHU5_9SPIT1.420e-5975.42Hypothetical protein (Fragment) n=1 Tax=Euplotes h... [more]
A0A086LKX4_TOXGO4.690e-5980.67Putative activating signal cointegrator 1 complex ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10780contigEcto-sp13_S_contig10780:186..1302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score239.6
Seed ortholog evalue7.6e-61
Seed eggNOG ortholog2880.D8LHW4
Preferred namebrr2
Model size357
KEGG koko:K12854
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000388,GO:0000393,GO:0000398,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0032991,GO:0034622,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0065003,GO:0070035,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:0140098,GO:1901360,GO:1990904
Exons3
EggNOG free text desc.response to ionizing radiation
EggNOG OGsCOG1204@1,KOG0951@2759
Ec32 ortholog descriptionImmunoglobulin E-set
Ec32 orthologEc-18_000740.2
EC3.6.4.13
Cds size357
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462554.7249763-CDS-Ecto-sp13_S_contig10780:185..2841681462554.7249763-CDS-Ecto-sp13_S_contig10780:185..284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10780 186..284 +
1681462554.7354565-CDS-Ecto-sp13_S_contig10780:470..6021681462554.7354565-CDS-Ecto-sp13_S_contig10780:470..602Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10780 471..602 +
1681462554.752626-CDS-Ecto-sp13_S_contig10780:1176..13021681462554.752626-CDS-Ecto-sp13_S_contig10780:1176..1302Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10780 1177..1302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10780.707.1prot_Ecto-sp13_S_contig10780.707.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10780 186..1302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10780.707.1

>prot_Ecto-sp13_S_contig10780.707.1 ID=prot_Ecto-sp13_S_contig10780.707.1|Name=mRNA_Ecto-sp13_S_contig10780.707.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
QDVLGYSFAIHHAGLPKGDRQLVEDLFQDKHIQVLVSTATLAWGVNLPAH
TVILKGTQMYSPEKGKWVELSPLDILQMMGRAGRPQYDSEGEAIVITQHS
ELQYYLSLNNQQLPIESQV
back to top

mRNA from alignment at Ecto-sp13_S_contig10780:186..1302+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10780.707.1 ID=mRNA_Ecto-sp13_S_contig10780.707.1|Name=mRNA_Ecto-sp13_S_contig10780.707.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10780:186..1302+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGACGTGCTAGGCTACTCGTTCGCGATCCATCACGCCGGTCTCCCCAA
GGGCGACCGCCAGCTGGTGGAGGACCTCTTCCAAGACAAGCACATCCAGG
TGGGTGTGGTCTGTCTTCTTTTTTTTTTTGCTCTCGCGTCCCTACATGTA
TTGATTCTTCTATTTCATTTGGTTACGTTTTGTCCTCCTCCTCCTCCTCC
TCCCTCAACAACAACACACCAACCTGCCAACAGCAACGAAGCTAACAAGC
TGACAAATACAGCCAACAACGATGAACCACCACAGGTGTTGGTGTCTACG
GCCACGCTGGCGTGGGGCGTGAACCTTCCCGCACACACGGTGATCCTCAA
GGGAACACAGATGTACTCTCCGGAGAAGGGAAAGTGGGTGGAGCTGTCAC
CCCTCGACATCTTGCAGGTGCGGTGTTTGTATGTGGGTGGTTCCCTGCGA
CACGTCGAGCGGTTTTGCTTCATCCTCCAATACCGTTTCGTGTTGCTATT
TTTTTTCCCTTTTTCCGCCCGGCCTGTAAAGTGCCGACGTTTGATCAACA
GGACCCGCTACCAATCGTTAGTTACCGTGGGATTACGAATGTTTTTGTCT
ATTCGATGGGTTGTATGTCCTGCGTGAGCGCTTGGTTGATGTGTATGTTC
CAGTTGCAGCAATCCCTCCGCTAAGGGCACCGTTTGTAAGGACACTCCCC
CGGATAACGACAACTTTTTTTTTCACAGGGATGGTGGCTCGCAGAATATA
CGACATGAGAAGGGGCATCAACCTAAAGGATACTTCCCCGGCTGAAGGAC
ACCGTTTAAACGAAGAACCATGTGTGTCCTCAACCCAGGAACGACTGTAG
TCTCTTCCCGAGAGCATAAATGCAAAGAAGACAGGCTTCCACGTTCGATG
GATCGGTCCATGTTCAACTGTTTTTAACCCCTGCACCGTGTCTTCGTTGA
ATCGTGGATCGATTGATGGATGGGTTTCTATTACTATTTAGATGATGGGG
CGTGCTGGACGTCCTCAGTACGACTCCGAGGGAGAAGCGATCGTCATCAC
GCAGCACAGCGAGCTCCAGTACTACCTGAGTCTCAACAACCAGCAGCTGC
CCATCGAGAGCCAGGTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10780:186..1302+

>mRNA_Ecto-sp13_S_contig10780.707.1 ID=mRNA_Ecto-sp13_S_contig10780.707.1|Name=mRNA_Ecto-sp13_S_contig10780.707.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10780:186..1302+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGACGTGCTAGGCTACTCGTTCGCGATCCATCACGCCGGTCTCCCCAA
GGGCGACCGCCAGCTGGTGGAGGACCTCTTCCAAGACAAGCACATCCAGG
TGTTGGTGTCTACGGCCACGCTGGCGTGGGGCGTGAACCTTCCCGCACAC
ACGGTGATCCTCAAGGGAACACAGATGTACTCTCCGGAGAAGGGAAAGTG
GGTGGAGCTGTCACCCCTCGACATCTTGCAGATGATGGGGCGTGCTGGAC
GTCCTCAGTACGACTCCGAGGGAGAAGCGATCGTCATCACGCAGCACAGC
GAGCTCCAGTACTACCTGAGTCTCAACAACCAGCAGCTGCCCATCGAGAG
CCAGGTG
back to top