mRNA_Ecto-sp13_S_contig10762.691.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10762.691.1
Unique NamemRNA_Ecto-sp13_S_contig10762.691.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10762.691.1 vs. uniprot
Match: D7FNJ8_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNJ8_ECTSI)

HSP 1 Score: 864 bits (2233), Expect = 8.960e-302
Identity = 497/579 (85.84%), Postives = 513/579 (88.60%), Query Frame = 1
Query:    1 MDTIGSPAASSCDSGSDSDGFLHVSSREDYVMVQSPKRSRAEAGAAPAAASSVGAXXXXXXXXT------------VGNGGGVGTASHNSDHQPATSVSRPSAFARKLASSIDRSRAAATEAATTAAKAATANITGPSSPLGPYHPPLHQHQQQKRPQRTKVAAVSPEAPWLPSHYVERSALLERVVNELIGKKHVDNRHARNSSTTKSGDSQLHNNSTIDNNGGNTXXXXXXXXXXXXXNDDGREGAAYALLGDSGSGKTVLASAIVSHPEVRKKFWRGIFWVSLGRADVTRATAGTGGDLLRAVFHALAAQVVAIAHPLPANSDEAAAATALLARSASPGETLKKLASSNGSSRLGGQNRLLVLDGISESFTDNVNTVAELQRAGFVVLVTGAKPCALSLSQSKRTSSPAKPEAGWDLGSGRSTPQHCRFHVSVLQAVTSNEAVEMLLKRVRRPGGAAMEVEATTRAGWAEQKAGDAGDPAVDAATRASFESCALQVVNECGEIAPLALAIVGAVVARQDERGGRRDNSPPCDYAERCRQIERQLIRDHGRCGDGYALSRVIELGFGALAGDKTKDC 1701
            MD +GSPAASSCDSGSDSDGF+HVSS ED+VMVQS KRSRAEAGAAPAAASSVG     XXXX             VG GGGVGTASHNSD QPATS+SRP+AFARKLASSIDRS AAATEAATTAAKA TANITGPSS        LHQ QQ KRP RTKVAAVSPEAP LPSHYVER ALLE+VVNELIGKKH+DNRHARNSSTTKSGD+QLHN           XXXXXXXXXXXXX  DGRE AAYALLGDSGSGKTVLASAIVSHPEVR+KFWRGIFWVSLGRA VTRATAGTGGDLLRAVFHALAAQVVAIAHPLPANSDEAAAATALLAR ASPGETLK+LASSNG SRLGGQ+RLLVLDGISESFTDNVN VAELQRAGFVVLVTG KPCALSL QSKRTSSPAKPEAGWDLG+GRSTPQHCRFHVSVLQAVT NEAVEMLLKRVRRPGGAA+ +EATT A WAEQKAGDAGDP VDAATRASFESCALQVVN+CGEIAPLALAIVGAVVA QDERGGRRDNSPPCDYAERCRQIERQLIRDH RCGDGYALSRV+ELGFGAL GDKTKDC
Sbjct:    1 MDNVGSPAASSCDSGSDSDGFVHVSSGEDFVMVQSSKRSRAEAGAAPAAASSVGVDAAGXXXXXXXXXXXXXXXXXVGTGGGVGTASHNSDQQPATSISRPTAFARKLASSIDRSHAAATEAATTAAKAXTANITGPSSXXXXXXXRLHQLQQ-KRPPRTKVAAVSPEAPRLPSHYVERWALLEKVVNELIGKKHLDNRHARNSSTTKSGDNQLHNXXXXXXXXXXXXXXXXXXXXXXXXXGDGRESAAYALLGDSGSGKTVLASAIVSHPEVRRKFWRGIFWVSLGRAGVTRATAGTGGDLLRAVFHALAAQVVAIAHPLPANSDEAAAATALLARPASPGETLKQLASSNGGSRLGGQSRLLVLDGISESFTDNVNAVAELQRAGFVVLVTGEKPCALSLLQSKRTSSPAKPEAGWDLGNGRSTPQHCRFHVSVLQAVTPNEAVEMLLKRVRRPGGAAIALEATTPAAWAEQKAGDAGDPGVDAATRASFESCALQVVNDCGEIAPLALAIVGAVVAGQDERGGRRDNSPPCDYAERCRQIERQLIRDHDRCGDGYALSRVMELGFGALPGDKTKDC 578          
BLAST of mRNA_Ecto-sp13_S_contig10762.691.1 vs. uniprot
Match: A0A6H5L2M9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2M9_9PHAE)

HSP 1 Score: 750 bits (1937), Expect = 5.790e-261
Identity = 435/569 (76.45%), Postives = 458/569 (80.49%), Query Frame = 1
Query:    1 MDTIGSPAASSCDSGSDSDGFLHVSSREDYVMVQSPKRSRAEAGAAPAAASSVGAXXXXXXXXTVGNGGGVGTASHNSDHQPATSVSRPSAFARKLASSIDRSRAAATEAATTAAKAATANITGPSSPLGPYHPPLHQHQQQKRPQRTKVAAVSPEAPWLPSHYVERSALLERVVNELIGKKHVDNRHARNSSTTKSGDSQLHNNSTIDNNGGNTXXXXXXXXXXXXXNDDGREGAAYALLGDSGSGKTVLASAIVSHPEVRKKFWRGIFWVSLGRADV-TRATAGTGGDLLRAVFHALAAQVVAIAHPLPANSDEAAAATALLARSASPGETLKKLASSNGSSRLGGQNRLLVLDGISESFTDNVNTVAELQRAGFVVLVTGAKPCALSLSQSKRTSSPAKPEAGWDLGSGRSTPQHCRFHVSVLQAVTSNEAVEMLLKRVRRPGGAAMEVEATTRAGWAEQKAGDAGDPAVDAATRASFESCALQVVNECGEIAPLALAIVGAVVARQDERGGRRDNSPPCDYAERCRQIERQLIRDHGRCGDGY-ALSRVIELGFGALAGDKTKDC 1701
            MDT GSPAAS CD GSDSDGF+HVSSREDYV+VQSPK S  EA AA    SSVGA   XXXXX         TASHNSDHQPATS+SRP+A  RKLASSIDRS AAATEAATTAAKAATANITGPSSP GPYH   H HQQQ RP RT+VAAVSP+AP LPSHYVERSALLE+VVNELIGKKH+DNRH RNSSTTKSGD+QLH           T           XXNDDGREGA+YALLGDSGSGKTVLASAI SHPEVR+KFWRGIFWVSLGR  V TRA  GTGGDLLRAVFHALAAQVVA+AH LPANSDE  AATALL+RSASPGETLKKLASSNGS  LGGQ+RLLVLDGISESFTDNV+T+AELQRAGFVVLVTGAKP                 EAGWDLG+GRST QHCRFHVS LQ+VT  EAV MLLK VRRPG AAMEVE +T AGWAEQ AGDAGDP VDAATRAS ESCALQVVN CGEIAPLALAIVGAVVA QDERG RRDNSPPCDYA+RC QIE+ + R    CGDGY A SRV+ELGF AL GDKTKDC
Sbjct:    1 MDTAGSPAASCCDRGSDSDGFVHVSSREDYVIVQSPKMSEEEAAAALXXXSSVGANAAXXXXXXXXXXXXXXTASHNSDHQPATSISRPTACTRKLASSIDRSHAAATEAATTAAKAATANITGPSSPPGPYHSFRHHHQQQIRPPRTRVAAVSPKAPRLPSHYVERSALLEKVVNELIGKKHLDNRHVRNSSTTKSGDNQLHXXXXXXXXXXXTNTSGDRHGNENXXNDDGREGASYALLGDSGSGKTVLASAIASHPEVRRKFWRGIFWVSLGRGVVVTRARTGTGGDLLRAVFHALAAQVVAMAHLLPANSDEETAATALLSRSASPGETLKKLASSNGSPWLGGQSRLLVLDGISESFTDNVDTMAELQRAGFVVLVTGAKP-----------------EAGWDLGNGRSTLQHCRFHVSELQSVTLKEAVAMLLKTVRRPGRAAMEVEDSTPAGWAEQNAGDAGDPGVDAATRASIESCALQVVNHCGEIAPLALAIVGAVVAGQDERGSRRDNSPPCDYAKRCHQIEQHVTRRQD-CGDGYDAFSRVMELGFDALPGDKTKDC 551          
BLAST of mRNA_Ecto-sp13_S_contig10762.691.1 vs. uniprot
Match: D7FNJ7_ECTSI (Armadillo/beta-catenin repeat family protein / U-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNJ7_ECTSI)

HSP 1 Score: 599 bits (1545), Expect = 4.890e-196
Identity = 378/593 (63.74%), Postives = 419/593 (70.66%), Query Frame = 1
Query:   19 PAASSCDSGSDSDGFLHVSSREDYVMVQSPKRSRAEAGAAPAAASSVGAXXXXXXXXTVGNGGGVGT-ASHNSDHQPATSVSRPSAFARKLASSIDRSRAAATEAATTAAKA-------ATANITGPSSPLGPYHPPLHQHQQQKRPQRTKVAAVSPEAPWLPSHYVERSALLERVVNELIGKKHVDNRHARNSSTTKSGDSQLHNNSTIDNNGGN----------------TXXXXXXXXXXXXXNDDGREGAAYALLGDSGSGKTVLASAIVSHPEVRKKFWRGIFWVSLGRADV-TRATAGTGGDLLRAVFHALAAQVVAIAHPLPANSDEAAAATALLARSASPGETLKKLASSNGSSRLGGQNRLLVLDGISESFTDNVNTVAELQRAGFVVLVTGAKPCALSLSQSKRTSSPAKPEAGW------DLGSGRSTPQHCRFHVSVLQAVTSNEAVEMLLKRVRRPGGAAMEVEATTRAGWAEQKAGDAGDPAVDAATRASFESCALQVVNECGEIAPLALAIVGAVVARQDERGGRRDNSPPCDYAERCRQIERQLIRDHGRCGDGY-ALSRVIELGFGALAGDKTKDC 1701
            P ASS D+GSDSDGF+ VS +ED+V ++SP R R  A AAPA A S G            NG      A H+ +HQPAT+ S       +L SSI+RS A AT  ATT            +ANI  PSSPL P HP  H H QQ  P  T+VAAV PEAP LPSHYVERSALLE VVN LI KKH DN HAR  +TT SGD+QL NN  I NNG N                       XXXXXXX+DDG EGAAYALLGDSGSGKTVLASAIVSHPEVR+KFWRGIFWV+LGR  V TRA  GTGG LLRA+ H LAAQVVA+ HPLPAN +EAAAATALLARSAS GETLK+LA+SNG S +G  +RLLVLD ISESFTDN N VAEL+RAGF VLVT ++PCALS+ +SK+    AKPE G       DL  G  T  H R HVSVL   T +EAVEMLLKRVRRPGGA M VEAT+ AGWAE KA +AG P  +A+TRASFESCALQVVN C E+APLALAIVGAV+A QDERGGRRDNS  CDYAERCRQIERQ+ R H  CGDGY A +RV+ELGFGAL GDKTKDC
Sbjct:   10 PRASSSDNGSDSDGFVVVSDQEDFVKLKSPPRPRTAAVAAPAIAPSAGLDEPGLTVGIGSNGXXXXXXAPHHRNHQPATATSPG-----ELVSSINRSPAVAT--ATTXXXXXXXXXXXTSANIVSPSSPLRPNHPCRHHHNQQNSPPWTRVAAVPPEAPRLPSHYVERSALLENVVNMLIAKKHFDNGHARGVTTTNSGDNQLDNNFPIRNNGNNGTHVEKRCKTFFPRGTKNTSGDGXXXXXXXDDDGLEGAAYALLGDSGSGKTVLASAIVSHPEVRRKFWRGIFWVNLGRGGVVTRARTGTGGGLLRALLHDLAAQVVALDHPLPANGEEAAAATALLARSASAGETLKQLATSNGGSHVGELSRLLVLDSISESFTDNPNAVAELERAGFTVLVTCSRPCALSVLRSKQPM--AKPEVGVPGGLPNDLEHGHRTSPHRRIHVSVLHPATPSEAVEMLLKRVRRPGGATMAVEATSPAGWAELKAAEAGGPGANASTRASFESCALQVVNHCREVAPLALAIVGAVIAGQDERGGRRDNSLSCDYAERCRQIERQVTR-HQDCGDGYDAFNRVMELGFGALPGDKTKDC 592          
BLAST of mRNA_Ecto-sp13_S_contig10762.691.1 vs. uniprot
Match: A0A6H5KWN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWN2_9PHAE)

HSP 1 Score: 588 bits (1517), Expect = 6.880e-196
Identity = 365/591 (61.76%), Postives = 404/591 (68.36%), Query Frame = 1
Query:   19 PAASSCDSGSDSDGFLHVSSREDYVMVQSPKRSRAEAGAAPAAASSVGAXXXXXXXXTVGNGGGVGTASHNSDHQPATSVSRPSAFARKLASSIDRSRAAATEAATTAAKAA-----TANITGPSSPLGPYHP-PLHQHQQQKRPQRTKVAAVSPEAPWLPSHYVERSALLERVVNELIGKKHVDNRHARNSSTTKSGDSQLHNNSTIDNNGGNTXXXXXXXXXXXXXN----------------DDGREGAAYALLGDSGSGKTVLASAIVSHPEVRKKFWRGIFWVSLGRADV-TRATAGTGGDLLRAVFHALAAQVVAIAHPLPANSDEAAAATALLARSASPGETLKKLASSNGSSRLGGQNRLLVLDGISESFTDNVNTVAELQRAGFVVLVTGAKPCALSLSQSKRTSSPAKPEAGW------DLGSGRSTPQHCRFHVSVLQAVTSNEAVEMLLKRVRRPGGAAMEVEATTRAGWAEQKAGDAGDPAVDAATRASFESCALQVVNECGEIAPLALAIVGAVVARQDERGGRRDNSPPCDYAERCRQIERQLIRDHGRCGDGY-ALSRVIELGFGALAGDKTKDC 1701
            P ASS D+GSDSDGF+ VS +ED+V ++SP R R    AAPAAA S G           G+G     A+   +HQ ATS SRP++    L  SI+RSRA AT               + NI  PSSPL P HP           P  T+VAAV PEAP LPSHYVERSALLE+VVN L+ KKH+DN HA   +TT SGD+QL NN  I NNG N                               DDGREGAAYALLGDSGSGKTVLASAI SHPEVR+KFWRGIFWVSLGR  V TRA  GTGG LLRA+ H LAAQVVA+  PLPAN +EAAAATALLARSAS GETLK+LASSNG S +G  +RLLVLDGISESFTDN N VAEL RAGF VLVT ++PCALS+ QSK+    AKPE G       DL  G  T  H R HVSVL   T NEAVEMLLKRVRRPG A   VEAT+ AGWA Q+A DAGDP  +A+TRASFESCALQVVN CGEIAPLALAIVGAV+A QDE G RRDNSPPC+YAERCR+IER++ R H  CGDGY A SRVIELGF AL GDKTKDC
Sbjct:    6 PRASSSDNGSDSDGFVVVSDQEDFVKLKSPPRPRTATVAAPAAAPSAGPDESGPAVGIGGDGXXXXXATDRRNHQSATSSSRPTSPPGGLVPSINRSRAVATATXXXXXXXXXXXXXSVNIISPSSPLCPNHPCHXXXXXXXNSPSWTRVAAVPPEAPRLPSHYVERSALLEKVVNMLVAKKHLDNGHASGGTTTNSGDNQLDNNLPIRNNGNNGTHVEKCCKTFFPRGTKNTSGDGXXXXXXXXDDGREGAAYALLGDSGSGKTVLASAIASHPEVRRKFWRGIFWVSLGRGGVVTRARTGTGGGLLRALLHDLAAQVVALDLPLPANGEEAAAATALLARSASAGETLKQLASSNGGSHVGELSRLLVLDGISESFTDNPNAVAELGRAGFTVLVTCSRPCALSVLQSKQPM--AKPEVGVPGGLSNDLEHGHRTSPHRRIHVSVLHPTTPNEAVEMLLKRVRRPGEATTAVEATSPAGWAAQRATDAGDPGANASTRASFESCALQVVNHCGEIAPLALAIVGAVIAGQDETGDRRDNSPPCNYAERCRRIERRITR-HQDCGDGYDAFSRVIELGFNALPGDKTKDC 593          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10762.691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FNJ8_ECTSI8.960e-30285.84Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ect... [more]
A0A6H5L2M9_9PHAE5.790e-26176.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNJ7_ECTSI4.890e-19663.74Armadillo/beta-catenin repeat family protein / U-b... [more]
A0A6H5KWN2_9PHAE6.880e-19661.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10762contigEcto-sp13_S_contig10762:3..2596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score874.8
Seed ortholog evalue2.2e-251
Seed eggNOG ortholog2880.D7FNJ8
Model size1701
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
Cds size1701
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462553.1079657-CDS-Ecto-sp13_S_contig10762:2..2451681462553.1079657-CDS-Ecto-sp13_S_contig10762:2..245Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10762 3..245 -
1681462553.124324-CDS-Ecto-sp13_S_contig10762:409..12321681462553.124324-CDS-Ecto-sp13_S_contig10762:409..1232Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10762 410..1232 -
1681462553.1345735-CDS-Ecto-sp13_S_contig10762:1961..25961681462553.1345735-CDS-Ecto-sp13_S_contig10762:1961..2596Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10762 1962..2596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10762.691.1prot_Ecto-sp13_S_contig10762.691.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10762 3..2596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10762.691.1

>prot_Ecto-sp13_S_contig10762.691.1 ID=prot_Ecto-sp13_S_contig10762.691.1|Name=mRNA_Ecto-sp13_S_contig10762.691.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=567bp
MDTIGSPAASSCDSGSDSDGFLHVSSREDYVMVQSPKRSRAEAGAAPAAA
SSVGADGAGPAGPTVGNGGGVGTASHNSDHQPATSVSRPSAFARKLASSI
DRSRAAATEAATTAAKAATANITGPSSPLGPYHPPLHQHQQQKRPQRTKV
AAVSPEAPWLPSHYVERSALLERVVNELIGKKHVDNRHARNSSTTKSGDS
QLHNNSTIDNNGGNTNTSGDGNGNENSNNDDGREGAAYALLGDSGSGKTV
LASAIVSHPEVRKKFWRGIFWVSLGRADVTRATAGTGGDLLRAVFHALAA
QVVAIAHPLPANSDEAAAATALLARSASPGETLKKLASSNGSSRLGGQNR
LLVLDGISESFTDNVNTVAELQRAGFVVLVTGAKPCALSLSQSKRTSSPA
KPEAGWDLGSGRSTPQHCRFHVSVLQAVTSNEAVEMLLKRVRRPGGAAME
VEATTRAGWAEQKAGDAGDPAVDAATRASFESCALQVVNECGEIAPLALA
IVGAVVARQDERGGRRDNSPPCDYAERCRQIERQLIRDHGRCGDGYALSR
VIELGFGALAGDKTKDC
back to top

mRNA from alignment at Ecto-sp13_S_contig10762:3..2596-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10762.691.1 ID=mRNA_Ecto-sp13_S_contig10762.691.1|Name=mRNA_Ecto-sp13_S_contig10762.691.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2594bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10762:3..2596- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATACTATTGGATCACCAGCGGCCTCATCTTGCGACAGCGGATCGGA TTCAGACGGATTTCTCCACGTTTCGAGCCGGGAGGACTACGTCATGGTGC AGTCGCCAAAGAGGTCTCGGGCGGAGGCAGGCGCAGCCCCAGCAGCAGCA TCATCGGTGGGGGCAGATGGCGCAGGTCCCGCAGGTCCCACCGTTGGCAA CGGTGGCGGTGTTGGTACGGCTTCGCACAACAGCGACCACCAGCCTGCTA CTTCTGTCAGCCGTCCTTCGGCTTTCGCTCGGAAATTGGCGTCATCCATC GACCGCAGTCGCGCAGCCGCCACCGAGGCCGCCACCACCGCGGCCAAAGC AGCCACCGCCAACATCACCGGCCCGTCTTCACCACTCGGCCCTTATCATC CACCCCTCCACCAACACCAGCAGCAAAAACGCCCTCAACGAACGAAGGTA GCCGCGGTGTCCCCGGAGGCGCCCTGGCTCCCTTCGCACTACGTGGAGCG GTCGGCCCTGCTCGAGAGGGTCGTCAACGAGCTCATCGGCAAGAAACATG TCGACAACCGTCACGCCAGGAACAGCAGCACCACCAAAAGCGGCGACAGC CAACTCCACAACAATTCCACAATCGACAACAACGGGTAAGGGCATGCACG AACAATCACAAGACACATTTGGCCCACCAAATCGAAACTCTGGATCCGCG GGACGTGTGTGTGTGTGATTCTTTTGAGGGGGGCGGTCGTATCCAGAGAC CCTTGGGATACATGCCTAGGCGTGCTTCTCTCTGTGAATGACAGTTGGGC CTAGAGACCGCCGGCAGGTGACGGGCACCCGCACCACCCAGGTTCGTCTT AGGAAAGCTTCTCATCATGCCTCGATGCACCAACCTCCTCGGGGAGCCCC TAGCACGCCTGTCACCCGTTTGGCACAGTGGTCAGAGAAACATGATTTCA CTTGAGCTAACGTGCGTTGTGGGTTGAGTAGTGTTCACGGTAACCAAACT ACCAATGCATGGAGACAGAAAAAGTACAAGGTAAGAAGAAGGAAATCGTT TCAGCAACCTTTCGGCGTGGAAGGATTTCCCGGGATCGAAAACGACAATG AAAAACAGGCTTTTCATCGTGCTTGCGTGTGTGTCTCCATACAAGCTCTT CGTTGGGTAGCAAGGTGAACTTCAGTAAATAATAACCGGAATGAAAATCC GGAGGTCGCAAACGGTCACCTAATGGTTCGTTATCTGTCGATGTTTCATG GTGTTTTCGATCTTGCGCCCCCTCCTGAGCGGCGGAAGGCTATGTGCCCT AAAATTAATTTTTCGCATACCCTTGGAAACATCCCGCAAAACATTGCACA ACGATTTTCGCCAGAGGCAACACGAACACCAGTGGCGACGGGAACGGTAA CGAAAACAGCAACAACGACGACGGTCGCGAGGGTGCTGCCTACGCCCTGC TCGGTGACAGCGGGTCGGGGAAAACCGTTCTGGCGTCGGCCATCGTCTCT CACCCTGAGGTCCGGAAAAAGTTCTGGCGAGGAATCTTCTGGGTCAGCCT TGGACGCGCGGATGTAACGAGAGCAACGGCAGGCACAGGAGGAGATCTGC TGAGAGCTGTGTTTCACGCTCTGGCTGCGCAGGTGGTTGCGATAGCCCAT CCGCTCCCAGCCAACAGTGACGAAGCCGCCGCCGCAACCGCACTCCTTGC CCGGTCAGCAAGCCCTGGGGAAACCCTCAAGAAGCTGGCCTCCTCGAACG GGAGTTCACGGCTGGGAGGGCAAAACCGACTCCTCGTTCTTGATGGCATC AGCGAGAGCTTCACCGACAACGTCAACACCGTGGCCGAGCTGCAAAGGGC CGGGTTTGTGGTGCTGGTGACCGGCGCAAAGCCGTGCGCACTGTCGCTCT CGCAGAGCAAGCGGACATCCTCGCCAGCAAAGCCGGAGGCTGGCTGGGAC CTAGGGAGCGGTCGTTCCACACCGCAGCACTGCCGATTCCATGTCAGTGT GCTGCAGGCTGTGACGTCAAACGAGGCGGTGGAGATGCTGCTGAAGAGGG TGAGGCGGCCGGGTGGGGCGGCAATGGAGGTAGAGGCGACGACACGCGCA GGTTGGGCAGAGCAGAAGGCCGGTGATGCTGGTGACCCGGCCGTCGACGC GGCGACCCGGGCGTCGTTCGAGTCGTGTGCTCTACAGGTGATTTTGCTGG ACTGCTAGATGTGGGAGTTGGTGTGTGGCTCGGCTGACTGGGTATACACG TTGATCAGACGGTTGACAAATTCAAGATAGGTATACACTTGAAAATCTTT GCTTTTACCCGCCTACTTTGTCACATTCGCGGCGCGAACTTCTTGCAACA GGTAGTCAATGAATGCGGAGAGATCGCACCGCTGGCTCTCGCTATCGTCG GCGCAGTAGTAGCCCGCCAGGATGAGAGGGGTGGCCGTCGGGACAACTCG CCGCCCTGCGACTACGCTGAACGCTGCCGTCAGATCGAGCGGCAACTCAT CCGGGATCATGGTCGTTGTGGCGACGGCTACGCTTTGAGCAGGGTGATAG AGTTGGGGTTTGGCGCGCTCGCTGGCGACAAGACGAAGGACTGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10762:3..2596-

>mRNA_Ecto-sp13_S_contig10762.691.1 ID=mRNA_Ecto-sp13_S_contig10762.691.1|Name=mRNA_Ecto-sp13_S_contig10762.691.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1701bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10762:3..2596- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATACTATTGGATCACCAGCGGCCTCATCTTGCGACAGCGGATCGGA
TTCAGACGGATTTCTCCACGTTTCGAGCCGGGAGGACTACGTCATGGTGC
AGTCGCCAAAGAGGTCTCGGGCGGAGGCAGGCGCAGCCCCAGCAGCAGCA
TCATCGGTGGGGGCAGATGGCGCAGGTCCCGCAGGTCCCACCGTTGGCAA
CGGTGGCGGTGTTGGTACGGCTTCGCACAACAGCGACCACCAGCCTGCTA
CTTCTGTCAGCCGTCCTTCGGCTTTCGCTCGGAAATTGGCGTCATCCATC
GACCGCAGTCGCGCAGCCGCCACCGAGGCCGCCACCACCGCGGCCAAAGC
AGCCACCGCCAACATCACCGGCCCGTCTTCACCACTCGGCCCTTATCATC
CACCCCTCCACCAACACCAGCAGCAAAAACGCCCTCAACGAACGAAGGTA
GCCGCGGTGTCCCCGGAGGCGCCCTGGCTCCCTTCGCACTACGTGGAGCG
GTCGGCCCTGCTCGAGAGGGTCGTCAACGAGCTCATCGGCAAGAAACATG
TCGACAACCGTCACGCCAGGAACAGCAGCACCACCAAAAGCGGCGACAGC
CAACTCCACAACAATTCCACAATCGACAACAACGGAGGCAACACGAACAC
CAGTGGCGACGGGAACGGTAACGAAAACAGCAACAACGACGACGGTCGCG
AGGGTGCTGCCTACGCCCTGCTCGGTGACAGCGGGTCGGGGAAAACCGTT
CTGGCGTCGGCCATCGTCTCTCACCCTGAGGTCCGGAAAAAGTTCTGGCG
AGGAATCTTCTGGGTCAGCCTTGGACGCGCGGATGTAACGAGAGCAACGG
CAGGCACAGGAGGAGATCTGCTGAGAGCTGTGTTTCACGCTCTGGCTGCG
CAGGTGGTTGCGATAGCCCATCCGCTCCCAGCCAACAGTGACGAAGCCGC
CGCCGCAACCGCACTCCTTGCCCGGTCAGCAAGCCCTGGGGAAACCCTCA
AGAAGCTGGCCTCCTCGAACGGGAGTTCACGGCTGGGAGGGCAAAACCGA
CTCCTCGTTCTTGATGGCATCAGCGAGAGCTTCACCGACAACGTCAACAC
CGTGGCCGAGCTGCAAAGGGCCGGGTTTGTGGTGCTGGTGACCGGCGCAA
AGCCGTGCGCACTGTCGCTCTCGCAGAGCAAGCGGACATCCTCGCCAGCA
AAGCCGGAGGCTGGCTGGGACCTAGGGAGCGGTCGTTCCACACCGCAGCA
CTGCCGATTCCATGTCAGTGTGCTGCAGGCTGTGACGTCAAACGAGGCGG
TGGAGATGCTGCTGAAGAGGGTGAGGCGGCCGGGTGGGGCGGCAATGGAG
GTAGAGGCGACGACACGCGCAGGTTGGGCAGAGCAGAAGGCCGGTGATGC
TGGTGACCCGGCCGTCGACGCGGCGACCCGGGCGTCGTTCGAGTCGTGTG
CTCTACAGGTAGTCAATGAATGCGGAGAGATCGCACCGCTGGCTCTCGCT
ATCGTCGGCGCAGTAGTAGCCCGCCAGGATGAGAGGGGTGGCCGTCGGGA
CAACTCGCCGCCCTGCGACTACGCTGAACGCTGCCGTCAGATCGAGCGGC
AACTCATCCGGGATCATGGTCGTTGTGGCGACGGCTACGCTTTGAGCAGG
GTGATAGAGTTGGGGTTTGGCGCGCTCGCTGGCGACAAGACGAAGGACTG
C
back to top