mRNA_Ecto-sp13_S_contig10762.691.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10762.691.1 vs. uniprot
Match: D7FNJ8_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNJ8_ECTSI) HSP 1 Score: 864 bits (2233), Expect = 8.960e-302 Identity = 497/579 (85.84%), Postives = 513/579 (88.60%), Query Frame = 1
Query: 1 MDTIGSPAASSCDSGSDSDGFLHVSSREDYVMVQSPKRSRAEAGAAPAAASSVGAXXXXXXXXT------------VGNGGGVGTASHNSDHQPATSVSRPSAFARKLASSIDRSRAAATEAATTAAKAATANITGPSSPLGPYHPPLHQHQQQKRPQRTKVAAVSPEAPWLPSHYVERSALLERVVNELIGKKHVDNRHARNSSTTKSGDSQLHNNSTIDNNGGNTXXXXXXXXXXXXXNDDGREGAAYALLGDSGSGKTVLASAIVSHPEVRKKFWRGIFWVSLGRADVTRATAGTGGDLLRAVFHALAAQVVAIAHPLPANSDEAAAATALLARSASPGETLKKLASSNGSSRLGGQNRLLVLDGISESFTDNVNTVAELQRAGFVVLVTGAKPCALSLSQSKRTSSPAKPEAGWDLGSGRSTPQHCRFHVSVLQAVTSNEAVEMLLKRVRRPGGAAMEVEATTRAGWAEQKAGDAGDPAVDAATRASFESCALQVVNECGEIAPLALAIVGAVVARQDERGGRRDNSPPCDYAERCRQIERQLIRDHGRCGDGYALSRVIELGFGALAGDKTKDC 1701
MD +GSPAASSCDSGSDSDGF+HVSS ED+VMVQS KRSRAEAGAAPAAASSVG XXXX VG GGGVGTASHNSD QPATS+SRP+AFARKLASSIDRS AAATEAATTAAKA TANITGPSS LHQ QQ KRP RTKVAAVSPEAP LPSHYVER ALLE+VVNELIGKKH+DNRHARNSSTTKSGD+QLHN XXXXXXXXXXXXX DGRE AAYALLGDSGSGKTVLASAIVSHPEVR+KFWRGIFWVSLGRA VTRATAGTGGDLLRAVFHALAAQVVAIAHPLPANSDEAAAATALLAR ASPGETLK+LASSNG SRLGGQ+RLLVLDGISESFTDNVN VAELQRAGFVVLVTG KPCALSL QSKRTSSPAKPEAGWDLG+GRSTPQHCRFHVSVLQAVT NEAVEMLLKRVRRPGGAA+ +EATT A WAEQKAGDAGDP VDAATRASFESCALQVVN+CGEIAPLALAIVGAVVA QDERGGRRDNSPPCDYAERCRQIERQLIRDH RCGDGYALSRV+ELGFGAL GDKTKDC
Sbjct: 1 MDNVGSPAASSCDSGSDSDGFVHVSSGEDFVMVQSSKRSRAEAGAAPAAASSVGVDAAGXXXXXXXXXXXXXXXXXVGTGGGVGTASHNSDQQPATSISRPTAFARKLASSIDRSHAAATEAATTAAKAXTANITGPSSXXXXXXXRLHQLQQ-KRPPRTKVAAVSPEAPRLPSHYVERWALLEKVVNELIGKKHLDNRHARNSSTTKSGDNQLHNXXXXXXXXXXXXXXXXXXXXXXXXXGDGRESAAYALLGDSGSGKTVLASAIVSHPEVRRKFWRGIFWVSLGRAGVTRATAGTGGDLLRAVFHALAAQVVAIAHPLPANSDEAAAATALLARPASPGETLKQLASSNGGSRLGGQSRLLVLDGISESFTDNVNAVAELQRAGFVVLVTGEKPCALSLLQSKRTSSPAKPEAGWDLGNGRSTPQHCRFHVSVLQAVTPNEAVEMLLKRVRRPGGAAIALEATTPAAWAEQKAGDAGDPGVDAATRASFESCALQVVNDCGEIAPLALAIVGAVVAGQDERGGRRDNSPPCDYAERCRQIERQLIRDHDRCGDGYALSRVMELGFGALPGDKTKDC 578
BLAST of mRNA_Ecto-sp13_S_contig10762.691.1 vs. uniprot
Match: A0A6H5L2M9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2M9_9PHAE) HSP 1 Score: 750 bits (1937), Expect = 5.790e-261 Identity = 435/569 (76.45%), Postives = 458/569 (80.49%), Query Frame = 1
Query: 1 MDTIGSPAASSCDSGSDSDGFLHVSSREDYVMVQSPKRSRAEAGAAPAAASSVGAXXXXXXXXTVGNGGGVGTASHNSDHQPATSVSRPSAFARKLASSIDRSRAAATEAATTAAKAATANITGPSSPLGPYHPPLHQHQQQKRPQRTKVAAVSPEAPWLPSHYVERSALLERVVNELIGKKHVDNRHARNSSTTKSGDSQLHNNSTIDNNGGNTXXXXXXXXXXXXXNDDGREGAAYALLGDSGSGKTVLASAIVSHPEVRKKFWRGIFWVSLGRADV-TRATAGTGGDLLRAVFHALAAQVVAIAHPLPANSDEAAAATALLARSASPGETLKKLASSNGSSRLGGQNRLLVLDGISESFTDNVNTVAELQRAGFVVLVTGAKPCALSLSQSKRTSSPAKPEAGWDLGSGRSTPQHCRFHVSVLQAVTSNEAVEMLLKRVRRPGGAAMEVEATTRAGWAEQKAGDAGDPAVDAATRASFESCALQVVNECGEIAPLALAIVGAVVARQDERGGRRDNSPPCDYAERCRQIERQLIRDHGRCGDGY-ALSRVIELGFGALAGDKTKDC 1701
MDT GSPAAS CD GSDSDGF+HVSSREDYV+VQSPK S EA AA SSVGA XXXXX TASHNSDHQPATS+SRP+A RKLASSIDRS AAATEAATTAAKAATANITGPSSP GPYH H HQQQ RP RT+VAAVSP+AP LPSHYVERSALLE+VVNELIGKKH+DNRH RNSSTTKSGD+QLH T XXNDDGREGA+YALLGDSGSGKTVLASAI SHPEVR+KFWRGIFWVSLGR V TRA GTGGDLLRAVFHALAAQVVA+AH LPANSDE AATALL+RSASPGETLKKLASSNGS LGGQ+RLLVLDGISESFTDNV+T+AELQRAGFVVLVTGAKP EAGWDLG+GRST QHCRFHVS LQ+VT EAV MLLK VRRPG AAMEVE +T AGWAEQ AGDAGDP VDAATRAS ESCALQVVN CGEIAPLALAIVGAVVA QDERG RRDNSPPCDYA+RC QIE+ + R CGDGY A SRV+ELGF AL GDKTKDC
Sbjct: 1 MDTAGSPAASCCDRGSDSDGFVHVSSREDYVIVQSPKMSEEEAAAALXXXSSVGANAAXXXXXXXXXXXXXXTASHNSDHQPATSISRPTACTRKLASSIDRSHAAATEAATTAAKAATANITGPSSPPGPYHSFRHHHQQQIRPPRTRVAAVSPKAPRLPSHYVERSALLEKVVNELIGKKHLDNRHVRNSSTTKSGDNQLHXXXXXXXXXXXTNTSGDRHGNENXXNDDGREGASYALLGDSGSGKTVLASAIASHPEVRRKFWRGIFWVSLGRGVVVTRARTGTGGDLLRAVFHALAAQVVAMAHLLPANSDEETAATALLSRSASPGETLKKLASSNGSPWLGGQSRLLVLDGISESFTDNVDTMAELQRAGFVVLVTGAKP-----------------EAGWDLGNGRSTLQHCRFHVSELQSVTLKEAVAMLLKTVRRPGRAAMEVEDSTPAGWAEQNAGDAGDPGVDAATRASIESCALQVVNHCGEIAPLALAIVGAVVAGQDERGSRRDNSPPCDYAKRCHQIEQHVTRRQD-CGDGYDAFSRVMELGFDALPGDKTKDC 551
BLAST of mRNA_Ecto-sp13_S_contig10762.691.1 vs. uniprot
Match: D7FNJ7_ECTSI (Armadillo/beta-catenin repeat family protein / U-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNJ7_ECTSI) HSP 1 Score: 599 bits (1545), Expect = 4.890e-196 Identity = 378/593 (63.74%), Postives = 419/593 (70.66%), Query Frame = 1
Query: 19 PAASSCDSGSDSDGFLHVSSREDYVMVQSPKRSRAEAGAAPAAASSVGAXXXXXXXXTVGNGGGVGT-ASHNSDHQPATSVSRPSAFARKLASSIDRSRAAATEAATTAAKA-------ATANITGPSSPLGPYHPPLHQHQQQKRPQRTKVAAVSPEAPWLPSHYVERSALLERVVNELIGKKHVDNRHARNSSTTKSGDSQLHNNSTIDNNGGN----------------TXXXXXXXXXXXXXNDDGREGAAYALLGDSGSGKTVLASAIVSHPEVRKKFWRGIFWVSLGRADV-TRATAGTGGDLLRAVFHALAAQVVAIAHPLPANSDEAAAATALLARSASPGETLKKLASSNGSSRLGGQNRLLVLDGISESFTDNVNTVAELQRAGFVVLVTGAKPCALSLSQSKRTSSPAKPEAGW------DLGSGRSTPQHCRFHVSVLQAVTSNEAVEMLLKRVRRPGGAAMEVEATTRAGWAEQKAGDAGDPAVDAATRASFESCALQVVNECGEIAPLALAIVGAVVARQDERGGRRDNSPPCDYAERCRQIERQLIRDHGRCGDGY-ALSRVIELGFGALAGDKTKDC 1701
P ASS D+GSDSDGF+ VS +ED+V ++SP R R A AAPA A S G NG A H+ +HQPAT+ S +L SSI+RS A AT ATT +ANI PSSPL P HP H H QQ P T+VAAV PEAP LPSHYVERSALLE VVN LI KKH DN HAR +TT SGD+QL NN I NNG N XXXXXXX+DDG EGAAYALLGDSGSGKTVLASAIVSHPEVR+KFWRGIFWV+LGR V TRA GTGG LLRA+ H LAAQVVA+ HPLPAN +EAAAATALLARSAS GETLK+LA+SNG S +G +RLLVLD ISESFTDN N VAEL+RAGF VLVT ++PCALS+ +SK+ AKPE G DL G T H R HVSVL T +EAVEMLLKRVRRPGGA M VEAT+ AGWAE KA +AG P +A+TRASFESCALQVVN C E+APLALAIVGAV+A QDERGGRRDNS CDYAERCRQIERQ+ R H CGDGY A +RV+ELGFGAL GDKTKDC
Sbjct: 10 PRASSSDNGSDSDGFVVVSDQEDFVKLKSPPRPRTAAVAAPAIAPSAGLDEPGLTVGIGSNGXXXXXXAPHHRNHQPATATSPG-----ELVSSINRSPAVAT--ATTXXXXXXXXXXXTSANIVSPSSPLRPNHPCRHHHNQQNSPPWTRVAAVPPEAPRLPSHYVERSALLENVVNMLIAKKHFDNGHARGVTTTNSGDNQLDNNFPIRNNGNNGTHVEKRCKTFFPRGTKNTSGDGXXXXXXXDDDGLEGAAYALLGDSGSGKTVLASAIVSHPEVRRKFWRGIFWVNLGRGGVVTRARTGTGGGLLRALLHDLAAQVVALDHPLPANGEEAAAATALLARSASAGETLKQLATSNGGSHVGELSRLLVLDSISESFTDNPNAVAELERAGFTVLVTCSRPCALSVLRSKQPM--AKPEVGVPGGLPNDLEHGHRTSPHRRIHVSVLHPATPSEAVEMLLKRVRRPGGATMAVEATSPAGWAELKAAEAGGPGANASTRASFESCALQVVNHCREVAPLALAIVGAVIAGQDERGGRRDNSLSCDYAERCRQIERQVTR-HQDCGDGYDAFNRVMELGFGALPGDKTKDC 592
BLAST of mRNA_Ecto-sp13_S_contig10762.691.1 vs. uniprot
Match: A0A6H5KWN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWN2_9PHAE) HSP 1 Score: 588 bits (1517), Expect = 6.880e-196 Identity = 365/591 (61.76%), Postives = 404/591 (68.36%), Query Frame = 1
Query: 19 PAASSCDSGSDSDGFLHVSSREDYVMVQSPKRSRAEAGAAPAAASSVGAXXXXXXXXTVGNGGGVGTASHNSDHQPATSVSRPSAFARKLASSIDRSRAAATEAATTAAKAA-----TANITGPSSPLGPYHP-PLHQHQQQKRPQRTKVAAVSPEAPWLPSHYVERSALLERVVNELIGKKHVDNRHARNSSTTKSGDSQLHNNSTIDNNGGNTXXXXXXXXXXXXXN----------------DDGREGAAYALLGDSGSGKTVLASAIVSHPEVRKKFWRGIFWVSLGRADV-TRATAGTGGDLLRAVFHALAAQVVAIAHPLPANSDEAAAATALLARSASPGETLKKLASSNGSSRLGGQNRLLVLDGISESFTDNVNTVAELQRAGFVVLVTGAKPCALSLSQSKRTSSPAKPEAGW------DLGSGRSTPQHCRFHVSVLQAVTSNEAVEMLLKRVRRPGGAAMEVEATTRAGWAEQKAGDAGDPAVDAATRASFESCALQVVNECGEIAPLALAIVGAVVARQDERGGRRDNSPPCDYAERCRQIERQLIRDHGRCGDGY-ALSRVIELGFGALAGDKTKDC 1701
P ASS D+GSDSDGF+ VS +ED+V ++SP R R AAPAAA S G G+G A+ +HQ ATS SRP++ L SI+RSRA AT + NI PSSPL P HP P T+VAAV PEAP LPSHYVERSALLE+VVN L+ KKH+DN HA +TT SGD+QL NN I NNG N DDGREGAAYALLGDSGSGKTVLASAI SHPEVR+KFWRGIFWVSLGR V TRA GTGG LLRA+ H LAAQVVA+ PLPAN +EAAAATALLARSAS GETLK+LASSNG S +G +RLLVLDGISESFTDN N VAEL RAGF VLVT ++PCALS+ QSK+ AKPE G DL G T H R HVSVL T NEAVEMLLKRVRRPG A VEAT+ AGWA Q+A DAGDP +A+TRASFESCALQVVN CGEIAPLALAIVGAV+A QDE G RRDNSPPC+YAERCR+IER++ R H CGDGY A SRVIELGF AL GDKTKDC
Sbjct: 6 PRASSSDNGSDSDGFVVVSDQEDFVKLKSPPRPRTATVAAPAAAPSAGPDESGPAVGIGGDGXXXXXATDRRNHQSATSSSRPTSPPGGLVPSINRSRAVATATXXXXXXXXXXXXXSVNIISPSSPLCPNHPCHXXXXXXXNSPSWTRVAAVPPEAPRLPSHYVERSALLEKVVNMLVAKKHLDNGHASGGTTTNSGDNQLDNNLPIRNNGNNGTHVEKCCKTFFPRGTKNTSGDGXXXXXXXXDDGREGAAYALLGDSGSGKTVLASAIASHPEVRRKFWRGIFWVSLGRGGVVTRARTGTGGGLLRALLHDLAAQVVALDLPLPANGEEAAAATALLARSASAGETLKQLASSNGGSHVGELSRLLVLDGISESFTDNPNAVAELGRAGFTVLVTCSRPCALSVLQSKQPM--AKPEVGVPGGLSNDLEHGHRTSPHRRIHVSVLHPTTPNEAVEMLLKRVRRPGEATTAVEATSPAGWAAQRATDAGDPGANASTRASFESCALQVVNHCGEIAPLALAIVGAVIAGQDETGDRRDNSPPCNYAERCRRIERRITR-HQDCGDGYDAFSRVIELGFNALPGDKTKDC 593 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10762.691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10762.691.1 >prot_Ecto-sp13_S_contig10762.691.1 ID=prot_Ecto-sp13_S_contig10762.691.1|Name=mRNA_Ecto-sp13_S_contig10762.691.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=567bp MDTIGSPAASSCDSGSDSDGFLHVSSREDYVMVQSPKRSRAEAGAAPAAAback to top mRNA from alignment at Ecto-sp13_S_contig10762:3..2596- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10762.691.1 ID=mRNA_Ecto-sp13_S_contig10762.691.1|Name=mRNA_Ecto-sp13_S_contig10762.691.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2594bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10762:3..2596- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10762:3..2596- >mRNA_Ecto-sp13_S_contig10762.691.1 ID=mRNA_Ecto-sp13_S_contig10762.691.1|Name=mRNA_Ecto-sp13_S_contig10762.691.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1701bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10762:3..2596- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |