mRNA_Ecto-sp13_S_contig10760.689.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10760.689.1
Unique NamemRNA_Ecto-sp13_S_contig10760.689.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10760.689.1 vs. uniprot
Match: A0A6H5L4R0_9PHAE (RNase H type-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4R0_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 1.200e-76
Identity = 132/136 (97.06%), Postives = 133/136 (97.79%), Query Frame = 2 
Query:   41 APPGVPAAEAEKRRAAAADQRRGLSAAGTGLRVLAQVLDEIEQIGGGNVAVVTNEPALVDLLSPGFRANSEDAALQAIVTRWRNASGYLLDPAEENELAPAFMLARCCAEPPPVSTLSWNGAGAAGTGGVTVAAND 448
            APPGVPAAEAEKRRAAAADQRRGLSAAGTGLRVLAQVLDEIEQIGGGNVAVVTNEPALVDLLSPGFRANSED ALQAIVTRWRNASGYLLDPAEENELAPAFMLARCCAEPPPVSTLSWNGAGAA TGG+T AAND
Sbjct:  409 APPGVPAAEAEKRRAAAADQRRGLSAAGTGLRVLAQVLDEIEQIGGGNVAVVTNEPALVDLLSPGFRANSEDPALQAIVTRWRNASGYLLDPAEENELAPAFMLARCCAEPPPVSTLSWNGAGAAATGGITAAAND 544
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BLAST of mRNA_Ecto-sp13_S_contig10760.689.1 vs. uniprot
Match: D7FZY9_ECTSI (Ribonuclease H n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY9_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 8.790e-31
Identity = 73/78 (93.59%), Postives = 73/78 (93.59%), Query Frame = 2 
Query:    2 RVTRGATPPQPAQAPPGVPAAEAEKRRA--AAADQRRGLSAAGTGLRVLAQVLDEIEQIGGGNVAVVTNEPALVDLLS 229
            RVTR ATP QPAQAPPGVPAAEAEKRRA  AAAD RRGLSAAGTGLRVLAQVLDEIEQIGGGNVAVVTNEPALVDLLS
Sbjct:  399 RVTRCATPAQPAQAPPGVPAAEAEKRRAVAAAADHRRGLSAAGTGLRVLAQVLDEIEQIGGGNVAVVTNEPALVDLLS 476
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10760.689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4R0_9PHAE1.200e-7697.06RNase H type-1 domain-containing protein n=1 Tax=E... [more]
D7FZY9_ECTSI8.790e-3193.59Ribonuclease H n=1 Tax=Ectocarpus siliculosus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10760contigEcto-sp13_S_contig10760:4237..5648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size452
Hectar predicted targeting categoryother localisation
Exons2
Cds size450
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462552.9512832-CDS-Ecto-sp13_S_contig10760:4238..44591681462552.9512832-CDS-Ecto-sp13_S_contig10760:4238..4459Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10760 4239..4459 -
1681462552.9671056-CDS-Ecto-sp13_S_contig10760:5419..56481681462552.9671056-CDS-Ecto-sp13_S_contig10760:5419..5648Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10760 5420..5648 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10760.689.1prot_Ecto-sp13_S_contig10760.689.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10760 4239..5648 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10760.689.1

>prot_Ecto-sp13_S_contig10760.689.1 ID=prot_Ecto-sp13_S_contig10760.689.1|Name=mRNA_Ecto-sp13_S_contig10760.689.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=150bp
QGDKGRYPPPACPGAPRRTGGGGGETPGGGGGPAAGSLRRWHRPARPGAG
AGRDRADRGRQRGSRDERAGACGPAVARLQGQLGGRCPPGHRDALAKRLW
LPPRPRGRERAGPRLHAGPLLRGAPPGVHALLERCRGRRYRRRYRGGERR
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mRNA from alignment at Ecto-sp13_S_contig10760:4237..5648-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10760.689.1 ID=mRNA_Ecto-sp13_S_contig10760.689.1|Name=mRNA_Ecto-sp13_S_contig10760.689.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1412bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10760:4237..5648- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGTGACAAGGGGCGCTACCCCCCCCCAGCCTGCCCAGGCGCCCCCCG
GCGTACCGGCGGCGGAGGCGGAGAAACGCCGGGCGGCGGCGGCGGACCAG
CGGCGGGGTCTCTCCGCCGCTGGCACCGGCCTGCGCGTCCTGGCGCAGGT
GCTGGACGAGATCGAGCAGATCGGGGGCGGCAACGTGGCAGTCGTGACGA
ACGAGCCGGCGCTTGTGGACCTGCTGTCGGTGAGTTTTTTTTTTCTTTTA
TGGAGATCCGGGCTGTGTACACACGATCGACGGCCCAAGAATCAATAAAT
GCACACCCACCTTCCCACCTTCGGAATTCACATCCGGCGGTACCTTTTTT
TCTGCTGTTGCCGCTGCATACGTTTGTGTAAATACTTAGGTATGAATGAC
GTGTATATTTTTTGTTGGTCATTTTTTTCCTGGTTTTGGCAGGAACGTGG
GAATTAAAAATCTATGTAGGCCAGGAAAAATGCTTTTGAAGCCAGGAAAT
CAAGATTTGACTCTGCTGCCCCCCATTTTTTATTCTTCCTTCATCAACAG
GAGCTCGATTCCGAATCTGATGTGATTTTTGGTATCTCGTTTTTAATTTA
CCCGGCCTTTTGGAAGTTTTTTTATGTAAACATACGGGGCGTTTTTATTT
GTCTGTCGGCGATACAGTACTTGACGGGTCAGACACTTCTTTTCATAAAG
ATTTTTTTTCGATTATCTGACCGTACACTGACCTGTTTCACCCATTACCT
TGCTGAAAGTTGTGGCCTCACATGTTTGAAGCGGTTAGTGGTGACGAAGG
AGTGCAGCGGGTTTACCTCCGGGGATCACTCAGCCATTTTCATTGTACTG
CTTATCGCACAGCATAGGGCATTGTGGGCACCAGATGTTCCAGATCGCAC
GGGACCTCGGCAATCGTACCAGTCCAATGACCTGCCCCCGCGTTTCGCAC
CGACTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCGCCCCCCCCGCCCCCCCCCCCCTCTTTCTCCCCTCTCACCCCCCCC
CCCCCCCCCCCGCCCCGCGCCGCCCCCNNNNNNNNNNTGTTCCCAATCCC
CCGGGGCCCCTGAAATCTTACCCCCCCAAATTCCCCCCCCCCCCTTTCCC
CCCCCCCCCCCCCCCCCCCCCCCGCCACCTCCGGAGTAGCCCGGCTTCAG
GGCCAACTCGGAGGACGCTGCCCTCCAGGCCATCGTGACGCGCTGGCGAA
ACGCCTCTGGCTACCTCCTCGACCCCGCGGAAGAGAACGAGCTGGCCCCC
GCCTTCATGCTGGCCCGCTGCTGCGCGGAGCCCCCCCCGGTGTCCACGCT
CTCCTGGAACGGTGCCGGGGCCGCCGGTACCGGAGGCGTTACCGTGGCGG
CGAACGACGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10760:4237..5648-

>mRNA_Ecto-sp13_S_contig10760.689.1 ID=mRNA_Ecto-sp13_S_contig10760.689.1|Name=mRNA_Ecto-sp13_S_contig10760.689.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=450bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10760:4237..5648- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGTGACAAGGGGCGCTACCCCCCCCCAGCCTGCCCAGGCGCCCCCCG
GCGTACCGGCGGCGGAGGCGGAGAAACGCCGGGCGGCGGCGGCGGACCAG
CGGCGGGGTCTCTCCGCCGCTGGCACCGGCCTGCGCGTCCTGGCGCAGGT
GCTGGACGAGATCGAGCAGATCGGGGGCGGCAACGTGGCAGTCGTGACGA
ACGAGCCGGCGCTTGTGGACCTGCTGTCGCCCGGCTTCAGGGCCAACTCG
GAGGACGCTGCCCTCCAGGCCATCGTGACGCGCTGGCGAAACGCCTCTGG
CTACCTCCTCGACCCCGCGGAAGAGAACGAGCTGGCCCCCGCCTTCATGC
TGGCCCGCTGCTGCGCGGAGCCCCCCCCGGTGTCCACGCTCTCCTGGAAC
GGTGCCGGGGCCGCCGGTACCGGAGGCGTTACCGTGGCGGCGAACGACGC
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