mRNA_Ecto-sp13_S_contig10754.685.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10754.685.1
Unique NamemRNA_Ecto-sp13_S_contig10754.685.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10754.685.1 vs. uniprot
Match: A0A6H5JFW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFW4_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.350e-8
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:  139 RSQKGTSKNTNITIAFGCKSTARFCATREIRAPLAFRTSQP 261
            R+ + T+KNTNITIAFGCK T  FCATREIRAPLA R  QP
Sbjct:  107 RAMRDTTKNTNITIAFGCKRTTGFCATREIRAPLALRKPQP 147
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10754.685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JFW4_9PHAE1.350e-873.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10754contigEcto-sp13_S_contig10754:2802..5628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1380
Hectar predicted targeting categoryother localisation
Exons5
Cds size1128
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10754.685.1prot_Ecto-sp13_S_contig10754.685.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10754 3008..5582 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462552.5215378-UTR-Ecto-sp13_S_contig10754:2801..30071681462552.5215378-UTR-Ecto-sp13_S_contig10754:2801..3007Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10754 2802..3007 -
1681462552.580289-UTR-Ecto-sp13_S_contig10754:5582..56281681462552.580289-UTR-Ecto-sp13_S_contig10754:5582..5628Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10754 5583..5628 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462552.5307126-CDS-Ecto-sp13_S_contig10754:3007..31281681462552.5307126-CDS-Ecto-sp13_S_contig10754:3007..3128Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10754 3008..3128 -
1681462552.5399933-CDS-Ecto-sp13_S_contig10754:3471..37021681462552.5399933-CDS-Ecto-sp13_S_contig10754:3471..3702Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10754 3472..3702 -
1681462552.5493631-CDS-Ecto-sp13_S_contig10754:3911..40011681462552.5493631-CDS-Ecto-sp13_S_contig10754:3911..4001Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10754 3912..4001 -
1681462552.5615914-CDS-Ecto-sp13_S_contig10754:4672..52531681462552.5615914-CDS-Ecto-sp13_S_contig10754:4672..5253Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10754 4673..5253 -
1681462552.5707932-CDS-Ecto-sp13_S_contig10754:5477..55821681462552.5707932-CDS-Ecto-sp13_S_contig10754:5477..5582Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10754 5478..5582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10754.685.1

>prot_Ecto-sp13_S_contig10754.685.1 ID=prot_Ecto-sp13_S_contig10754.685.1|Name=mRNA_Ecto-sp13_S_contig10754.685.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=376bp
MNNDDSWEDTAQAALEIHRRVISAVRERVTTGARKVRPRTPTSRSPSGAR
VRPGSAPPGRSERLSPFVRPNRDKVLVPSLENVSTMNAISEVELQVWATL
RHTVVEEDKQHPRQSTSTGILERARPNDGLAEYQLNVAGRAQQQQGSAKL
LPTALTPWGRETGGHRRTADDSYVGANRGRKYKTIERCVDADRHVLARDQ
DLDINRTYLQELDAVRQRDIERGRDSSVRYLREHAIKARKEERAFARTLW
AEARANEDSQIEMIRKATQWSRDLGENALYVPHRVKERLHVLKMENGDRA
SKFDWEQGRGGCGLRDLDEFRPTISINSFVKGDYARLEKAFHATRCGVCG
SSDLAATGCTQFQVIIPSTLPWCKL*
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mRNA from alignment at Ecto-sp13_S_contig10754:2802..5628-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10754.685.1 ID=mRNA_Ecto-sp13_S_contig10754.685.1|Name=mRNA_Ecto-sp13_S_contig10754.685.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2827bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10754:2802..5628- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCGCATTTTCTACGGCAGCAGTACAGCGGACGCGGGTTGTCACGATGA
ACAACGATGATTCATGGGAGGATACCGCCCAAGCTGCCTTGGAAATACAC
CGCCGTGTGATATCAGCGGTCCGCGAACGCGTGACGACAGGAGCCAGAAA
GGTATGTTTCGATGTACTCTTGGAAATAATTCAGGAAAATACGCGTACAG
CAGTAGTATTATGTATGCTGTGTATTACGTCATGTGTAGCTTGGGCGACC
GTGCAGCCTGTCCATCTGCATTAAATTTGTAGTACAACTCTTTCTTGTAC
CACTGTAATCCTCGTAGCAAGTTTCGACTTCAAGTCTTGTAAGGGGCTTT
AGGAACGTTTCCCCACCAATTGTAGGTACGTCCAAGAACACCAACATCAC
GATCGCCTTCGGGTGCAAGAGTACGGCCAGGTTCTGCGCCACCCGGGAGA
TCCGAGCGCCTCTCGCCTTTCGTACGTCCCAACCGTGACAAAGTTCTCGT
GCCAAGCCTGGAGAACGTTTCGACCATGAACGCGATAAGTGAAGTAGAGC
TGCAAGTATGGGCAACACTGAGGCACACAGTAGTGGAGGAGGACAAGCAA
CATCCTCGTCAATCGACATCAACAGGGATACTCGAACGGGCTCGCCCGAA
CGATGGTCTTGCTGAATATCAACTGAACGTAGCAGGGCGGGCGCAGCAGC
AGCAGGGTTCAGCAAAATTATTGCCGACTGCGTTGACGCCATGGGGTAGA
GAAACCGGTGGACATCGTAGGACCGCCGATGACTCGTACGTCGGTGCAAA
CCGTGGGAGAAAGTACAAAACTATTGAGAGATGTGTTGATGCAGATCGAC
ACGTGCTAGCTCGAGATCAGGATCTTGATATCAACAGGACGTATCTCCAG
GAGCTCGACGCTGTTCGTCAGAGGGATATCGAGAGGGGTCGGGATAGTTC
CGTTCGGTAAGCTGGTCTCGCGACAGACTTTACAGTACAAACAAGTACAG
CATGGAGGCGCGTCGGCTAGCGGGCGCGTGCTCGATACCGTAGTGAAATT
GTGGGTAGCCCTGCATTGTGCCCACGGCTACCTGCAGCTGAGACTCATCA
CAACTAGAGCATGGCGGTGTGCGTACATCGTTTGTAGTCAGGTGCACCAT
CACATGTAGACCCATCAATAGTTCAGATTGTTCAGAAGCATCATGACCAC
CAGACCACTAGTCAGGGCTGAGTGGTCTAGTGGTCATGATGCTTCTGAAC
AAAACTTAATGCCCCGAGTCCGTCCAACTTTATTTTAAGCCACGAACAGG
TCTCCACCAGGGTGTCCATCCCTGTGATCAGGGCTGTGCTTGCCACATCG
GTACAAGCAGGTCATCGGCTCATTGTGCGAAGCCTAGTTCTTCAGGCTTT
TGTCTTCCTCTTGCTTTGGGCACAAGCAAAGTCCTCGAAGGATACAATGC
TCAAGAGGAGATTCCAAACCCGGACTTGAGCTTTTGTTGAGAAGCACGAT
AAGTGTGGTCTATTTTGTGGTCATTCATCGTGCTTCTCAGCACATAGTAG
CACGTCACGACCTACAACAACTCACACCTGTCGTCAAATCTGCTGCACGT
GCCGGGCTTGACCGGTATTCTGCGTAGCTATCTCCGCGAACACGCCATAA
AGGCTAGGAAAGAAGAGAGAGCTTTCGCCAGGACGCTTTGGGCGGAAGCC
AGAGCCAATGAGGACAGGTGTGCGAGAAAACTGGTCGACTGGCTTGTGTA
CAACGAGGTACTGGGTAGTCCCAAGAGTTCCAAAACGCGTGTACACGGGT
ACGAAGAGCTGTGTGGTCAAGCTCGTAATTCCTACGAACTTGGCGTGTTC
CCACGTCCCCCCCCTACGCTCCACACAACGCCCACCTGCTCGCCCGACTC
TGACGCCCGCCGCTGTACGCAACCAGCCAAATCGAGATGATACGCAAAGC
AACCCAGTGGTCCCGAGACCTGGGCGAAAACGCTTTGTATGTGCCTCACC
GAGTGAAGGAAAGGTTGCACGTCTTGAAGATGGAGAACGGAGATAGAGCT
TCGAAATTCGACTGGGAACAAGGGCGAGGCGGTTGCGGTTTGAGAGATCT
TGACGAGTTCAGACCAACCATTTCGATCAACTCCTTTGTCAAGGGAGACT
ATGCAAGGTGAGGGCAATCCTGTTTCGCACGAACTTCTACGTTGTCCAGA
CTCCCTACCGATTGGACATTAATCTTGGCTGCTGAGGGTCGTCCATCGGC
TATTTTCCCATGTTCTAGGAAGGATTTCACGCGTTGGTTTAGTGGTTGCG
TACTATTTCAATGTGATATAAGTTTTGTCCGGTCTGCATGGATTAAGTAC
AGCCGTCAAGTCAATGAGCATTGGCGAGACTCGACCTCTTCTGGCGTAAT
AATTTGTCTTGTGCAGGAAGTTCTTGCTCAGTCGAAAGAAACAAGAACCG
GAACCGTTATAGTTACCTATCTAAGCTTTTCTCGTGTCCTAATCGACCAG
ACTGGAGAAAGCCTTCCACGCTACTCGCTGTGGGGTCTGCGGTAGCAGCG
ACTTAGCGGCGACCGGGTGCACCCAATTTCAGGTGATTATACCCTCTACG
CTCCCATGGTGCAAGCTGTGATGTGCCGGTCTTGAGAGTCGCCATATGGC
CCATCGGAGTTCTGACCAGAATTACTGCGTCTGGCAAGCTATTGCACGGT
AATGCGAATGGGCTAAACTGTGGTCAGCGCTTTGCTCCAACTCGTACAAT
TCACGTATCGCCTCGCCCTCTTTGCGAATATGTCGAGCAGCAACCACCCA
AAAGCAAGGGGATTTCATCACGCAAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10754:2802..5628-

>mRNA_Ecto-sp13_S_contig10754.685.1 ID=mRNA_Ecto-sp13_S_contig10754.685.1|Name=mRNA_Ecto-sp13_S_contig10754.685.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1128bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10754:2802..5628- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACAACGATGATTCATGGGAGGATACCGCCCAAGCTGCCTTGGAAAT
ACACCGCCGTGTGATATCAGCGGTCCGCGAACGCGTGACGACAGGAGCCA
GAAAGGTACGTCCAAGAACACCAACATCACGATCGCCTTCGGGTGCAAGA
GTACGGCCAGGTTCTGCGCCACCCGGGAGATCCGAGCGCCTCTCGCCTTT
CGTACGTCCCAACCGTGACAAAGTTCTCGTGCCAAGCCTGGAGAACGTTT
CGACCATGAACGCGATAAGTGAAGTAGAGCTGCAAGTATGGGCAACACTG
AGGCACACAGTAGTGGAGGAGGACAAGCAACATCCTCGTCAATCGACATC
AACAGGGATACTCGAACGGGCTCGCCCGAACGATGGTCTTGCTGAATATC
AACTGAACGTAGCAGGGCGGGCGCAGCAGCAGCAGGGTTCAGCAAAATTA
TTGCCGACTGCGTTGACGCCATGGGGTAGAGAAACCGGTGGACATCGTAG
GACCGCCGATGACTCGTACGTCGGTGCAAACCGTGGGAGAAAGTACAAAA
CTATTGAGAGATGTGTTGATGCAGATCGACACGTGCTAGCTCGAGATCAG
GATCTTGATATCAACAGGACGTATCTCCAGGAGCTCGACGCTGTTCGTCA
GAGGGATATCGAGAGGGGTCGGGATAGTTCCGTTCGCTATCTCCGCGAAC
ACGCCATAAAGGCTAGGAAAGAAGAGAGAGCTTTCGCCAGGACGCTTTGG
GCGGAAGCCAGAGCCAATGAGGACAGCCAAATCGAGATGATACGCAAAGC
AACCCAGTGGTCCCGAGACCTGGGCGAAAACGCTTTGTATGTGCCTCACC
GAGTGAAGGAAAGGTTGCACGTCTTGAAGATGGAGAACGGAGATAGAGCT
TCGAAATTCGACTGGGAACAAGGGCGAGGCGGTTGCGGTTTGAGAGATCT
TGACGAGTTCAGACCAACCATTTCGATCAACTCCTTTGTCAAGGGAGACT
ATGCAAGACTGGAGAAAGCCTTCCACGCTACTCGCTGTGGGGTCTGCGGT
AGCAGCGACTTAGCGGCGACCGGGTGCACCCAATTTCAGGTGATTATACC
CTCTACGCTCCCATGGTGCAAGCTGTGA
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