mRNA_Ecto-sp13_S_contig1075.682.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1075.682.1
Unique NamemRNA_Ecto-sp13_S_contig1075.682.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1075.682.1 vs. uniprot
Match: D7G2N4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2N4_ECTSI)

HSP 1 Score: 322 bits (826), Expect = 2.620e-108
Identity = 176/193 (91.19%), Postives = 177/193 (91.71%), Query Frame = 3
Query:   78 MSGSTSNHQGSRRQDELTALKVRKLGQQEELAKEFNFTLTRQGGLNDQARQTCKNLEYAIAIATRPGQIEYYRPSEEAARIVANGELAVLTNKIVRLQRDIDQAKQHCQVEQDIQQAGAVASSTAAAAHAQSPASPPCSSLAEWFAAYGEPARSASSGMMTNFEESPKIYGGTNHHRAFKTQATVMKKGRITR 656
            MSGSTSNHQGSRRQDELTALKVRKLGQQEELAKEFNF LTRQGGLNDQARQTCKNLEYAIAIATRPGQIEYYRPSEEAARIVANGEL VLTNKI RLQRDIDQ      VEQDIQQA  VASSTAAAA AQ  A PPCSSLAEWFAAYGEPA SASSG+MTNFEESPKIYGGTNHHRAFKTQATVMKKGRITR
Sbjct:    1 MSGSTSNHQGSRRQDELTALKVRKLGQQEELAKEFNFILTRQGGLNDQARQTCKNLEYAIAIATRPGQIEYYRPSEEAARIVANGELTVLTNKIARLQRDIDQ------VEQDIQQADVVASSTAAAAQAQPSARPPCSSLAEWFAAYGEPAPSASSGLMTNFEESPKIYGGTNHHRAFKTQATVMKKGRITR 187          
BLAST of mRNA_Ecto-sp13_S_contig1075.682.1 vs. uniprot
Match: A0A7S2UW48_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW48_9STRA)

HSP 1 Score: 138 bits (347), Expect = 4.220e-36
Identity = 77/182 (42.31%), Postives = 113/182 (62.09%), Query Frame = 3
Query:  111 RRQDELTALKVRKLGQQEELAKEFNFTLTRQGGLNDQARQTCKNLEYAIAIATRPGQIEYYRPSEEAARIVANGELAVLTNKIVRLQRDIDQAKQHCQVEQDIQQAGAVASSTAAAAHAQSPASPPCSSLAEWFAAYGEPARSASSGMMTNFEESPKIYGGTNHHRAFKTQATVMKKGRITR 656
            ++ ++L   K  KL QQ+ L+ EFN  LTR+GGLN+ +RQ CKNLE A+A+A RPG  EYY+   E  RI+A  +L +LTNKI ++QR++DQ      ++ +I+Q            H      P  ++L +WFA YG P +   +G ++ FE S K+YGGT HHRAFK+Q+  +KKG + +
Sbjct:   21 KKLEQLYEQKASKLAQQKNLSDEFNEILTREGGLNEVSRQACKNLEAAVAVAQRPGYFEYYQAPAEVQRIIAADDLKLLTNKINQIQRELDQ------IDSEIEQLSKQ--------HYSQRNPPQVNNLGQWFAVYGTP-KPPPNGTLSVFEPSDKVYGGTQHHRAFKSQSRSLKKGTVLK 187          
BLAST of mRNA_Ecto-sp13_S_contig1075.682.1 vs. uniprot
Match: A0A7S2SKE1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKE1_9STRA)

HSP 1 Score: 128 bits (321), Expect = 3.170e-32
Identity = 75/182 (41.21%), Postives = 108/182 (59.34%), Query Frame = 3
Query:  120 DELTALKVRKLGQQEELAKEFNFTLTRQGGLNDQARQTCKNLEYAIAIATRPGQIEYYRPSEEAARIVANGELAVLTNKIVRLQRDIDQAKQHCQVEQDIQQAGAVASSTAAAAHAQSPASPPCS---SLAEWFAAYGEPARSASSGMMTNFEESPKIYGGTNHHRAFKTQATVMKKGRITR 656
            D L A KV KL QQ+ +  E N  LTR+ GLND + +T +NLE A+ ++ +PG  EY++   E    V N +L  LT K+ R+Q +IDQ      ++ +I+   +           Q+PA+P      SL +W A +G P +   SG  + F+++PKIYGGTNHHRAFKTQ+  MK+GR+TR
Sbjct:   26 DGLLAAKVAKLDQQKRVTDEMNAILTRENGLNDTSHKTMRNLEVAVVVSKQPGFFEYFQAPSEVQAAVRNNDLVQLTKKVKRIQSEIDQ------IDAEIEHLRSK----------QTPAAPALGEMRSLKQWLAHHGAP-KQPPSGYFSTFQDAPKIYGGTNHHRAFKTQSMTMKRGRLTR 190          
BLAST of mRNA_Ecto-sp13_S_contig1075.682.1 vs. uniprot
Match: A0A1V9ZEM2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZEM2_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.280e-30
Identity = 76/179 (42.46%), Postives = 102/179 (56.98%), Query Frame = 3
Query:  120 DELTALKVRKLGQQEELAKEFNFTLTRQGGLNDQARQTCKNLEYAIAIATRPGQIEYYRPSEEAARIVANGELAVLTNKIVRLQRDIDQAKQHCQVEQDIQQAGAVASSTAAAAHAQSPASPPCSSLAEWFAAYGEPARSASSGMMTNFEESPKIYGGTNHHRAFKTQATVMKKGRITR 656
            DEL A K   L  Q+E A  F+  L   GGLN+ +R+TCKNLE AI  + +PG   YY   +    +V NGEL  L   IV+LQ+ IDQ         D + A   A + AA      P +    SL +WF+ YG P +  +SGM+T+F   PK+YGGT H+ AFK+Q+  MKKGR+T+
Sbjct:    2 DELRAKKAELLLAQQEKADRFHELLVGPGGLNEASRKTCKNLEAAITASKKPGYFLYYEQPDVVKAVVKNGELRKLQGVIVQLQQKIDQI--------DAELANHAAKAAAA------PVTNEVQSLKQWFSTYGTP-KPVTSGMLTSFATDPKVYGGTEHYSAFKSQSLTMKKGRLTK 165          
BLAST of mRNA_Ecto-sp13_S_contig1075.682.1 vs. uniprot
Match: A0A7S2FSZ0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FSZ0_9STRA)

HSP 1 Score: 119 bits (299), Expect = 3.270e-29
Identity = 72/175 (41.14%), Postives = 102/175 (58.29%), Query Frame = 3
Query:  138 KVRKLGQQEELAKEFNFTLTRQG--GLNDQARQTCKNLEYAIAIATRPGQIEYYRPSEEAARIVANGELAVLTNKIVRLQRDIDQAKQHCQVEQDIQQAGAVASSTAAAAHAQSPASPPCSSLAEWFAAYGEPARSASSGMMTNFEESPKIYGGTNHHRAFKTQATVMKKGRITR 656
            K+ KL +Q+ +A E N  LTR G  GLN+ +R+T KNLE A+ ++ RPG  EYY+P+ E   I  NGE+  L  K+ RL  +I Q     Q  + +++   ++S             P  +SLA+W A YG   +   SG  + F ++PKIYGGT HHRAFKTQ+  MK+GR+ R
Sbjct:   10 KMAKLKEQKRVADEINELLTRPGEDGLNESSRKTMKNLEVAVVVSKRPGFFEYYKPAPEVEAIQKNGEIQHLVKKLNRLGGEIAQLDAESQNIEAMRKPLKMSSG------------PELTSLAQWNARYGTVEKPVPSGFYSGFNDAPKIYGGTEHHRAFKTQSRTMKRGRLIR 172          
BLAST of mRNA_Ecto-sp13_S_contig1075.682.1 vs. uniprot
Match: A0A812TWU8_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TWU8_SYMMI)

HSP 1 Score: 119 bits (298), Expect = 5.120e-29
Identity = 76/186 (40.86%), Postives = 101/186 (54.30%), Query Frame = 3
Query:  126 LTAL---KVRKLGQQEELAKEFNFTLTRQGGLNDQARQTCKNLEYAIAIATRPGQIEYYRPSEEAARIVANGELAVLTNKIVRLQRDIDQAKQHCQVEQDIQQAGAVASSTAAAAHAQSPASPP-----CSSLAEWFAAYGEPARS-ASSGMMTNFEESPKIYGGTNHHRAFKTQATVMKKGRITR 656
            LTAL   KV+KL +Q+ L+   N  LT++GGLND ++   KNL  AIA+A +PG  EYY    E   I  +  L+ L   + ++ R+IDQ                       A H Q    PP      +S+++WF  YG P  +      MT F+ SPKIYGGTNHHRAFKTQA+ MKKGR+T+
Sbjct:    9 LTALYERKVQKLNEQKALSDRMNELLTKKGGLNDNSKNVRKNLSAAIAVAKQPGYFEYYETPSEVREIEDSKILSSLVKSLGKVHREIDQINSEI------------------AHHHQKGPEPPKAESSLTSMSQWFETYGRPENTHCLEERMTTFQPSPKIYGGTNHHRAFKTQASNMKKGRVTK 176          
BLAST of mRNA_Ecto-sp13_S_contig1075.682.1 vs. uniprot
Match: A0A067CQ53_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CQ53_SAPPC)

HSP 1 Score: 118 bits (296), Expect = 6.610e-29
Identity = 73/177 (41.24%), Postives = 102/177 (57.63%), Query Frame = 3
Query:  126 LTALKVRKLGQQEELAKEFNFTLTRQGGLNDQARQTCKNLEYAIAIATRPGQIEYYRPSEEAARIVANGELAVLTNKIVRLQRDIDQAKQHCQVEQDIQQAGAVASSTAAAAHAQSPASPPCSSLAEWFAAYGEPARSASSGMMTNFEESPKIYGGTNHHRAFKTQATVMKKGRITR 656
            L A K   L  Q+E A  F+  LT   GLN+ +R+TCKNLE AI  + +PG   YY   + A  IV NGEL  L + IV+LQ+ IDQ     +V+               AA + +PA     +L +WF+ YG P +  +SG++T+F   PK+YGGT H+ AFK+Q+  MKKGR+T+
Sbjct:    4 LRAKKEELLFAQKERADRFHELLT---GLNEASRKTCKNLEAAITASKKPGYFLYYEQPDVAKAIVKNGELRKLQSAIVQLQQKIDQVDAEIEVQ---------------AAKSSAPAPAEVQTLKQWFSTYGTP-KPVTSGVLTSFAADPKVYGGTEHYSAFKSQSLTMKKGRLTK 161          
BLAST of mRNA_Ecto-sp13_S_contig1075.682.1 vs. uniprot
Match: A0A1V9ZCG4_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZCG4_9STRA)

HSP 1 Score: 116 bits (290), Expect = 5.610e-28
Identity = 74/182 (40.66%), Postives = 100/182 (54.95%), Query Frame = 3
Query:  120 DELTALKVRKLGQQEELAKEFNFTLTRQGGLNDQARQTCKNLEYAIAIATRPGQIEYYRPSEEAARIVANGELAVLTNKIVRLQRDIDQAKQHCQVEQ---DIQQAGAVASSTAAAAHAQSPASPPCSSLAEWFAAYGEPARSASSGMMTNFEESPKIYGGTNHHRAFKTQATVMKKGRITR 656
            +EL A K   L  Q+E A +FN  L     LN+ +R+TCKNLE AI  + +PG   YY   +    +V NGEL  L N IV+LQ+ IDQ       +Q    I+  G   S+                SL +WFA YG P +  +SGM+T+F   PK+YGGT H+ AFK+Q+  MKKGR+T+
Sbjct:    2 EELRAKKTELLHAQKEKADKFNEILE---SLNEASRKTCKNLEAAITASKKPGYFSYYEQPDVVKAVVKNGELRKLQNAIVQLQQKIDQIDGELMNQQGTNSIENGGQSDSNV--------------QSLKQWFATYGTP-KPVTSGMLTSFVNDPKVYGGTEHYAAFKSQSLTMKKGRLTK 165          
BLAST of mRNA_Ecto-sp13_S_contig1075.682.1 vs. uniprot
Match: W4G997_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G997_9STRA)

HSP 1 Score: 115 bits (289), Expect = 9.020e-28
Identity = 75/182 (41.21%), Postives = 102/182 (56.04%), Query Frame = 3
Query:  120 DELTALKVRKLGQQEELAKEFNFTLTRQGGLNDQARQTCKNLEYAIAIATRPGQIEYYRPSEEAARIVANGELAVLTNKIVRLQRDIDQAKQHCQVEQDIQQAG---AVASSTAAAAHAQSPASPPCSSLAEWFAAYGEPARSASSGMMTNFEESPKIYGGTNHHRAFKTQATVMKKGRITR 656
            +EL   K   L  Q E A +FN  L   GGLN+ +R+ CKNLE AI+ + +PG   Y+   +    +V NGEL  L   IV+LQ+ IDQ         D++ A     +AS T      ++       SL +W + YG P +  SSGMMT F  +PK+YGGT H+ AFK+Q+T MKKGRIT+
Sbjct:    2 EELQKKKEELLRAQRENADKFNAILNGPGGLNETSRKMCKNLEAAISASKKPGYFMYFEQPDVVKAVVKNGELRKLQTMIVQLQQKIDQV--------DVEIANHSKGLASHTTGGGGRETD----IHSLKQWLSTYGTP-KPVSSGMMTCFSANPKVYGGTEHYSAFKSQSTTMKKGRITK 170          
BLAST of mRNA_Ecto-sp13_S_contig1075.682.1 vs. uniprot
Match: A0A3R6VT06_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6VT06_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.690e-27
Identity = 73/180 (40.56%), Postives = 104/180 (57.78%), Query Frame = 3
Query:  120 DELTALKVRKLGQQEELAKEFNFTLTRQGGLNDQARQTCKNLEYAIAIATRPGQIEYYRPSEEAARIVANGELAVLTNKIVRLQRDIDQAKQHCQVEQDI-QQAGAVASSTAAAAHAQSPASPPCSSLAEWFAAYGEPARSASSGMMTNFEESPKIYGGTNHHRAFKTQATVMKKGRITR 656
            ++L   K   L  Q E A  FN  L+  GGLN+ +R+ CKNLE AI  + +PG   Y+   +    +V NGEL  L   IV++Q+ ID       V+ +I   A A A++TA+   ++        SL +W + YG P +  SSG++T F  +PK+YGGT H+ AFKTQ+T MKKGRIT+
Sbjct:    7 EDLQKKKEELLHAQREKADRFNALLSGPGGLNETSRKVCKNLEAAITASKKPGYFMYFEQPDVVKAVVKNGELRKLQTAIVQIQQKIDL------VDAEITNNARANATTTASGRESE------IQSLKQWLSTYGTP-KPVSSGILTCFSANPKVYGGTEHYSAFKTQSTTMKKGRITK 173          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1075.682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7G2N4_ECTSI2.620e-10891.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UW48_9STRA4.220e-3642.31Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2SKE1_9STRA3.170e-3241.21Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1V9ZEM2_9STRA1.280e-3042.46Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S2FSZ0_9STRA3.270e-2941.14Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A812TWU8_SYMMI5.120e-2940.86Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A067CQ53_SAPPC6.610e-2941.24Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9ZCG4_9STRA5.610e-2840.66Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
W4G997_9STRA9.020e-2841.21Uncharacterized protein n=7 Tax=Aphanomyces astaci... [more]
A0A3R6VT06_9STRA2.690e-2740.56Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1075contigEcto-sp13_S_contig1075:11388..14509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score326.2
Seed ortholog evalue1e-86
Seed eggNOG ortholog2880.D7G2N4
Model size1002
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2C2XI@1,2S2SM@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_002870.1
Cds size582
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1075.682.1prot_Ecto-sp13_S_contig1075.682.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1075 11731..14432 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462551.879174-UTR-Ecto-sp13_S_contig1075:11387..117301681462551.879174-UTR-Ecto-sp13_S_contig1075:11387..11730Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1075 11388..11730 -
1681462551.9303823-UTR-Ecto-sp13_S_contig1075:14432..145091681462551.9303823-UTR-Ecto-sp13_S_contig1075:14432..14509Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1075 14433..14509 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462551.893349-CDS-Ecto-sp13_S_contig1075:11730..117801681462551.893349-CDS-Ecto-sp13_S_contig1075:11730..11780Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1075 11731..11780 -
1681462551.9025977-CDS-Ecto-sp13_S_contig1075:12402..126211681462551.9025977-CDS-Ecto-sp13_S_contig1075:12402..12621Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1075 12403..12621 -
1681462551.9117131-CDS-Ecto-sp13_S_contig1075:13108..132951681462551.9117131-CDS-Ecto-sp13_S_contig1075:13108..13295Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1075 13109..13295 -
1681462551.921172-CDS-Ecto-sp13_S_contig1075:14306..144321681462551.921172-CDS-Ecto-sp13_S_contig1075:14306..14432Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1075 14307..14432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1075.682.1

>prot_Ecto-sp13_S_contig1075.682.1 ID=prot_Ecto-sp13_S_contig1075.682.1|Name=mRNA_Ecto-sp13_S_contig1075.682.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=194bp
MSGSTSNHQGSRRQDELTALKVRKLGQQEELAKEFNFTLTRQGGLNDQAR
QTCKNLEYAIAIATRPGQIEYYRPSEEAARIVANGELAVLTNKIVRLQRD
IDQAKQHCQVEQDIQQAGAVASSTAAAAHAQSPASPPCSSLAEWFAAYGE
PARSASSGMMTNFEESPKIYGGTNHHRAFKTQATVMKKGRITR*
back to top

mRNA from alignment at Ecto-sp13_S_contig1075:11388..14509-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1075.682.1 ID=mRNA_Ecto-sp13_S_contig1075.682.1|Name=mRNA_Ecto-sp13_S_contig1075.682.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3122bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1075:11388..14509- (Ectocarpus species13 EcNAP12_S_4_19m)
TAGACTATTCTCCGCCGTCCACATGTGTTGGCATGTGTGATTCCACAAGC AGTTTGAGCGGCGGAACGTAAGGACCAATGTCGGGCTCAACGAGCAACCA CCAAGGCAGTCGGCGGCAGGATGAACTCACCGCGCTCAAAGTCCGCAAGT TGGGGCAGCAGGAGGAACTCGCGAAGGAGTTTAACTTTACCCTCACACGA CAGGTGAGACGTACATTCACATGTTGGAACGAAGCTTGAGACATGAGCGG GAGTAATTTTCCGGCGGGCTGGGTCAACACGTATGTTTCGTTCGTACACT TAAGCCATGTATTGTTCATCTAGAGAATGCTGATACATTAAGTTGCGTGA CCTCAATGTTCGGGCTATTTTAACGCCGAGCGAGTCGCCCCCGGTATTCC GACGTCAACCTGTCGGCATATGCGTAGCTATCGATACAGCAACATGATCG AGAGAGTGCGTTGAGCGAAACGTGTTCTTCCCCCAGTCTGCCAGAGAAAA GCACCACAAGTCGGCGCATCGGTCTGCTTGCGCTGTTTAGTACCATGGCG AACGTTGCCCTCGTTTCAATAGCACACCCCAATCGTCCTGATTATCCCAG CTGGAGCCTGGTCTTGGTTTTAACATGTACCCCCACATTACTGTCGGAAT AACAAGAGACGATCAGCAGGGTCACAGAATCGTCGAGAACTACTGTCAAG ATGTACAGTACATCCCTTATGCGACAAGTTAGCGCTGACTTATAGCATAG TGGACATGCTGAACATCTTAACAATAGTACAACCAACCGGGGTTCGAATC CCTCGTGGACCGTTTGACACGTCATTTTTCCGAGAAAAACTTCTGGGATA GGCTTGAAAGACGGTATGCATTCCAGTCCTCCAAGTGAAGACACATATTC CCGCCTGTAAGTCGACGAACCGCATGGGACAGCGCTGATTACAGGTATTA CAACGCTGGGGTTGAAGTCGAGGCCCAACAGCTGTAACAAGTTGAACTGG CCGAGGCTGGGATTCATAATTCCTGTCGTGGGCTAGAAAGGCCGCTTCAT TGGTGCTGATGGAGGGCTTCATAACTGCGCTCAAAAACGCTTCTGAATTT CTTAGATTCTGAGTTTGTTCGGGCTCAATTTCCTTCACTGCCAAGTCCTT ACGTGCGGGCGCTGCCTATATCACACTCCGTCACCTCCGGCCGCGTAACA CACGAACCGACCAGGGAGGCCTCAACGATCAGGCGCGCCAGACCTGCAAG AACCTAGAGTACGCGATCGCCATCGCGACTCGCCCGGGCCAGATCGAGTA CTACCGGCCGTCGGAGGAGGCGGCGCGCATCGTGGCGAACGGGGAGCTTG CGGTACTTACCAACAAGATCGTCCGTCTACAGCGAGACATCGATCAGGCC AGTTCGCGTGTAGCTGTGCAACCTGTTCGATTGTATCTCGGGAAAAATTA GTTGTCTAGGAGGAGGAGAAGGTGGACGTCGACTTCAAGAGGAGGGGAAA CAATCTCCTGGTTTGTGTTGAATTAATACCTTTTCAATTAATCTTGTCGT TCATCCAACGCGCTTCGAGTACAACTTTGCAGTCCTCGTCTTAGAGTCTG AACCCTCAGTCTCTGTCGGTGGTGCAAGCACCTTTCCTCCACTACCATTT TTCCTCCACTACGTTTACATGACTCGAAGGTAGCGGAGAAACTCGAAAGT CCTTAAGGTGTGCAGCGACCATTCTCGCCCCCTCTCTGCCTAACTCTTGT TCGCGCTCTCGGTCCACCAGTACCGATGGCCAGAACGCTGCATGCAAGCC ACAAGAACAAGCCATCCTAGATCACTTTCGAATTCACGTTTCATGCCAAG ATCTTGTCTGACTTCTCGCCCCGCGCGATCCCCAAAAAAACAACATTGTC AGGTGGAACAAGATATCCAGCAGGCCGGTGCGGTTGCCTCATCTACAGCA GCCGCTGCCCACGCGCAATCCCCGGCCAGTCCCCCGTGCTCTAGTCTCGC CGAGTGGTTCGCAGCGTACGGAGAGCCCGCGCGCTCAGCATCGTCCGGGA TGATGACAAACTTCGAGGAGAGTCCTAAGATCTACGGGGGTACAAACCAC CACCGAGGTCAGTAGAACCCACCCGGCAGAATGGTCAATTCCCACTGTTC AGTTTTATCCTTTGGGCCGGACGTCCATAGAGTCGAGGCGTACTTTGGGC GTTCCTGTACTTTTTTCATGGCGGTGCATCTGTTGCCTCTTGATACTCAG AACCACGTCATCTTGACGCCCTGCACGGAGTATTCATACCTTGCACTGAT TGCATGCCAGTACCCGTGCGTACCGCTGGTGGTACGGTTGACTGCGTGTC GGGTTTCTCTCGTGTCTCAGTGCGATGTTTTTCTTTCATGCACGCCCTAT TCCCTCACGACACCTAACGTGCACACACACCACCCCAACAGGCTGAGGTT GCTTTTCCATCACCATAAAGTTCAGAGGCCAGCTACACAGAATATCACAG GATATCGTGCATATCGGGGTTCTTCCGGGGTTATGTGTAAAGGTGTACCG ATCATGGTCAAAGCCACTCGACGGATGTCATAGGAATCGGGTCCTAACCT TTGCCCATGCACTGTGAGCAGGCTACCATTACAACGTTTTCGTCCCCCCA ATGAGAGTGCTGTCGCAGGCCATCAGTGCTAACGGGCCTGAACACTCCTC CTGCTTCGTTTGTCCGCTTGGGTGCACAGCCTTCAAGACCCAGGCGACCG TGATGAAGAAAGGGCGGATAACGCGATAGGGCAGGGCAGGATAGGATACA CAGGAAAGGGACACCATCGTCATAGCGTGACTAGTGCACGGTGACATTTT GTCCCCCACAGGTTCTGGCGTGTGGAGCAGAGTCAGGTCGTTAATGTACG TGGTGAAATGTGATCACCGTGGAGGGTCGACAAGGCGTGTCTAAATTATC ATCAAAGCCGAACCAGTATAAAACGACCATCCTGTGGATTCCGTGAGCGG AGGGTGGACCGGTGTTCGTGTTGAGGTGCTTTCTTGATGTGCTGGGCCGA AAGAGGAGGAGGCTATGGGTGTTTTTTTTGCTAACATCGATTGCTCTAAC CGGCTCGTCGATGACAAACTTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1075:11388..14509-

>mRNA_Ecto-sp13_S_contig1075.682.1 ID=mRNA_Ecto-sp13_S_contig1075.682.1|Name=mRNA_Ecto-sp13_S_contig1075.682.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=582bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1075:11388..14509- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGGCTCAACGAGCAACCACCAAGGCAGTCGGCGGCAGGATGAACT
CACCGCGCTCAAAGTCCGCAAGTTGGGGCAGCAGGAGGAACTCGCGAAGG
AGTTTAACTTTACCCTCACACGACAGGGAGGCCTCAACGATCAGGCGCGC
CAGACCTGCAAGAACCTAGAGTACGCGATCGCCATCGCGACTCGCCCGGG
CCAGATCGAGTACTACCGGCCGTCGGAGGAGGCGGCGCGCATCGTGGCGA
ACGGGGAGCTTGCGGTACTTACCAACAAGATCGTCCGTCTACAGCGAGAC
ATCGATCAGGCCAAACAACATTGTCAGGTGGAACAAGATATCCAGCAGGC
CGGTGCGGTTGCCTCATCTACAGCAGCCGCTGCCCACGCGCAATCCCCGG
CCAGTCCCCCGTGCTCTAGTCTCGCCGAGTGGTTCGCAGCGTACGGAGAG
CCCGCGCGCTCAGCATCGTCCGGGATGATGACAAACTTCGAGGAGAGTCC
TAAGATCTACGGGGGTACAAACCACCACCGAGCCTTCAAGACCCAGGCGA
CCGTGATGAAGAAAGGGCGGATAACGCGATAG
back to top