mRNA_Ecto-sp13_S_contig1074.676.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1074.676.1
Unique NamemRNA_Ecto-sp13_S_contig1074.676.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1074.676.1 vs. uniprot
Match: D7G8E8_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E8_ECTSI)

HSP 1 Score: 513 bits (1322), Expect = 1.620e-179
Identity = 292/375 (77.87%), Postives = 295/375 (78.67%), Query Frame = 1
Query:    1 MVRLEGRWASAGSKEPNVGVYSIAGEKAYDPLWKNQDAGLVIAPVDRREGQALFAIFDGHGKNGGQASRECMERLPKHLASASSQSGSPASALRRSCQRLHHDLATGVAGDCGRSGTTLCAAVLTGRRLTVANVGDSGCLRLLRSTAAASSGPSXXXXXAAAAIPGKAMLASDRGAPDVVDRAGGARGSGTSNRRRLRTAEKLIAGADAGEEAAPGGGSRGRGLVMERLSRDHKPESKGELERIRAAGGIVFPLPRSGSCGGLGAGGVTGGAPPTAAGSKKGLIAAARGIAAGTPRVWTTSGDGPGLAMSRSIGDKARTRASVGVTYEPEITEFDLDPRSDVMLVFASDGVWDVLSAEDIRKVRAFKPLRVHRTV 1125
            MVRLEGRWASAGS EPNVG+YSIAGEKA+DPLWKNQDAGLVIAP DRREGQALFAIFDGHGKNGGQASRECMERLPKHLASASSQSGSPASALRRSCQRLHHDLATGVAGDCGRSGTTLCAAVL GRRLTVANVGDSGCLRL RSTAAAS    XXXXX    IPGKA LASDRG PDVVD+AGGA                                    GLV ERLSRDHKPESKGELERIRAAGGIVFPLPRSGS G                GSKKGL  AARGIAAG PRVWT SGDGPGLAMSRSIGDK     SVGVTYEPEITEFDLD RSDVMLVFASDGVWDVLSAEDIRKVRAFKPLRV R V
Sbjct:    1 MVRLEGRWASAGSTEPNVGIYSIAGEKAHDPLWKNQDAGLVIAPFDRREGQALFAIFDGHGKNGGQASRECMERLPKHLASASSQSGSPASALRRSCQRLHHDLATGVAGDCGRSGTTLCAAVLAGRRLTVANVGDSGCLRLSRSTAAASXXXXXXXXXXXXXIPGKAALASDRGTPDVVDKAGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVTERLSRDHKPESKGELERIRAAGGIVFPLPRSGSGGXXXXXXXXXXXXXXXEGSKKGLKTAARGIAAGIPRVWTASGDGPGLAMSRSIGDKMAH--SVGVTYEPEITEFDLDKRSDVMLVFASDGVWDVLSAEDIRKVRAFKPLRVRRNV 373          
BLAST of mRNA_Ecto-sp13_S_contig1074.676.1 vs. uniprot
Match: A0A835ZAZ3_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAZ3_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 5.790e-14
Identity = 60/151 (39.74%), Postives = 77/151 (50.99%), Query Frame = 1
Query:  628 GEEAAPGGGSRGRGLVMERLSRDHKPESKGELERIRAAGGIVFPLPRSGSCGGLGAGGVTGGAPPTAAGSKKGLIAAARGIAAGTPRVWTTSGDGPGLAMSRSIGDKARTRASVGVTYEPEITEFDLDPRS-DVMLVFASDGVWDVLSAED 1077
            G +  PGG      LV E LS DHKP+++ E ERI AAGG VF +                         + GL         G PRVW    D PGLAMSRS+GDK    A  GV+ EPE    +LDP + DV+L+ A+DG+W+ +S E+
Sbjct:  219 GIQQVPGGA-----LVAEPLSVDHKPDAEAERERILAAGGRVFAVEY-----------------------EDGLD--------GPPRVWLGHMDVPGLAMSRSLGDKVAHTA--GVSSEPEFFTRELDPSAGDVLLILATDGLWEFMSNEE 331          
BLAST of mRNA_Ecto-sp13_S_contig1074.676.1 vs. uniprot
Match: A0A835YZ58_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ58_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.110e-13
Identity = 56/134 (41.79%), Postives = 74/134 (55.22%), Query Frame = 1
Query:  685 LSRDHKPESKGELERIRAAGGIVFPLPRSG--SCGGLGAGGVTGGAPPTAAGSKKGLIAAARGIAAGTPRVWTTSGDGPGLAMSRSIGDKARTRASVGVTYEPEITEFDLDPRSDVMLVFASDGVWDVLSAEDI 1080
            L+ DHKP    E +RI A+GG+V P P     +C         GGAP   A +      A RG      RVW  +GDGPGLAMSRS+GD    +  +GVT+EPE+ +  L    D +LV  SDG+WD+L  E++
Sbjct:  386 LTADHKPNVDSERQRILASGGLVGPTPERAVMNC--------QGGAPLAGAAAAAAEGGARRGRL--PSRVWMPAGDGPGLAMSRSLGDLVAHQ--IGVTHEPEVCQRVLS-AGDRVLVVGSDGIWDMLPNEEV 506          
BLAST of mRNA_Ecto-sp13_S_contig1074.676.1 vs. uniprot
Match: A0A1R2CT32_9CILI (PPM-type phosphatase domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CT32_9CILI)

HSP 1 Score: 76.6 bits (187), Expect = 1.050e-11
Identity = 56/145 (38.62%), Postives = 68/145 (46.90%), Query Frame = 1
Query:  655 SRGRGLVMERLSRDHKPESKGELERIRAAGGIVFPLPRSGSCGGLGAGGVTGGAPPTAAGSKKGLIAAARGIAAGTPRVWTTSGDGPGLAMSRSIGDKARTRASVGVTYEPEITEFDLDPRSDVMLVFASDGVWDVLSAEDIRKV 1089
            S G+  V   LSRDHKP+ + E  RI   GG VF                                    G   G  RVW    + PGLAMSRS+GD     ASVGV+ EPEI E+DL  + D  LV  SDGV++ LS E+I K+
Sbjct:  267 SSGKNWVSVSLSRDHKPDLEEEAARIARCGGRVFSYTDE------------------------------EGNPLGPARVWLKDQNTPGLAMSRSLGDSVA--ASVGVSSEPEILEYDLTGQ-DKFLVIGSDGVFEFLSNEEIVKL 378          
BLAST of mRNA_Ecto-sp13_S_contig1074.676.1 vs. uniprot
Match: A0A0D2MZT2_9CHLO (Protein-serine/threonine phosphatase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MZT2_9CHLO)

HSP 1 Score: 76.6 bits (187), Expect = 1.790e-11
Identity = 57/158 (36.08%), Postives = 70/158 (44.30%), Query Frame = 1
Query:  637 AAPGGGSRGRGLVMERLSRDHKPESKGELERIRAAGGIVFP--LPRSGSCGGLGAGGVTGGAPPTAAGSKKGLIAAARGIAAGTPRVWTTSGDGPGLAMSRSIGDKARTRASVGVTYEPEITEFDLDPRSDVMLVFASDGVWDVLSAEDIRKVRAFKP 1104
            AAPG       L+   L+ DH+P    E  R+ AAGG V P  LP                                 G   G PRVW      PGL +SRS+GD     A+VG T EPEI+   L+P  D  +V ASDGVWDVL+ E +  + A  P
Sbjct:  495 AAPGSTK----LIARPLTLDHRPRRLSERLRVEAAGGRVQPKQLPS--------------------------------GRLVGEPRVWLQQVAAPGLLLSRSLGDLMA--ATVGCTSEPEISYVTLEPERDQFVVLASDGVWDVLTNEQVCDIVAESP 614          
BLAST of mRNA_Ecto-sp13_S_contig1074.676.1 vs. uniprot
Match: A0A699ZLF7_HAELA (Protein phosphatase 2C-like protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZLF7_HAELA)

HSP 1 Score: 71.6 bits (174), Expect = 2.290e-11
Identity = 53/142 (37.32%), Postives = 64/142 (45.07%), Query Frame = 1
Query:  655 SRGRGLVMERLSRDHKPESKGELERIRAAGGIVFPLPRSGSCGGLGAGGVTGGAPPTAAGSKKGLIAAARGIAAGTPRVWTTSGDGPGLAMSRSIGDKARTRASVGVTYEPEITEFDLDPRSDVMLVFASDGVWDVLSAEDI 1080
            S G G V   LS+DHKP+   E  RI   GG V                           S+ G     RG   G  RVW    D PGLAMSR++GD       VGV   P+I    L  R D  LVFASDGVW+ LS++++
Sbjct:   43 SSGSGWVARDLSKDHKPDDDAEFLRITGRGGRVMS-------------------------SRNG-----RGQPVGPARVWLPHADYPGLAMSRALGDLVAR--PVGVVPVPDIRTEQLS-RQDGFLVFASDGVWEFLSSQEV 151          
BLAST of mRNA_Ecto-sp13_S_contig1074.676.1 vs. uniprot
Match: A0A383VME8_TETOB (Protein-serine/threonine phosphatase n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VME8_TETOB)

HSP 1 Score: 76.3 bits (186), Expect = 2.370e-11
Identity = 51/134 (38.06%), Postives = 64/134 (47.76%), Query Frame = 1
Query:  685 LSRDHKPESKGELERIRAAGGIVFP--LPRSGSCGGLGAGGVTGGAPPTAAGSKKGLIAAARGIAAGTPRVWTTSGDGPGLAMSRSIGDKARTRASVGVTYEPEITEFDLDPRSDVMLVFASDGVWDVLSAEDI 1080
            L+ DH+P    E ERI AAG  V P  LP                                 G   G PR+W  +  GPGL +SRS+GD   T A+VG T +PE++   L P  D +LV ASDGVWDVL+ E +
Sbjct:  509 LTIDHRPRRDSERERIEAAGARVAPKRLPS--------------------------------GRTVGEPRLWLQNAHGPGLLLSRSLGDL--TAATVGCTSDPEVSFTTLRPGVDHVLVMASDGVWDVLTNEQV 608          
BLAST of mRNA_Ecto-sp13_S_contig1074.676.1 vs. uniprot
Match: A0A1R2B349_9CILI (PPM-type phosphatase domain-containing protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2B349_9CILI)

HSP 1 Score: 75.5 bits (184), Expect = 2.600e-11
Identity = 55/143 (38.46%), Postives = 69/143 (48.25%), Query Frame = 1
Query:  661 GRGLVMERLSRDHKPESKGELERIRAAGGIVFPLPRSGSCGGLGAGGVTGGAPPTAAGSKKGLIAAARGIAAGTPRVWTTSGDGPGLAMSRSIGDKARTRASVGVTYEPEITEFDLDPRSDVMLVFASDGVWDVLSAEDIRKV 1089
            GR  +   LSRDHKP+SK E ERI  +GG V                                     G  AG  RVW  + D PGLAMSRS+GD     ASVGV  +PEI E  L P  D  ++ ASDGV++ +S E+I ++
Sbjct:  260 GRKWMSIALSRDHKPDSKDESERIYKSGGRVEAYQDE------------------------------NGNPAGPARVWLKNQDIPGLAMSRSLGDGVA--ASVGVICDPEILEIKLVPE-DKFIIIASDGVFEFISNEEIVRI 369          
BLAST of mRNA_Ecto-sp13_S_contig1074.676.1 vs. uniprot
Match: I7MJK6_TETTS (Protein phosphatase 2c n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7MJK6_TETTS)

HSP 1 Score: 76.3 bits (186), Expect = 2.700e-11
Identity = 52/136 (38.24%), Postives = 65/136 (47.79%), Query Frame = 1
Query:  673 VMERLSRDHKPESKGELERIRAAGGIVFPLPRSGSCGGLGAGGVTGGAPPTAAGSKKGLIAAARGIAAGTPRVWTTSGDGPGLAMSRSIGDKARTRASVGVTYEPEITEFDLDPRSDVMLVFASDGVWDVLSAEDI 1080
            V   L+RDHKP  + E ERI   GG +                                     G   G  RVW  + + PGLAMSRSIGD   T  SVGVT+EPEI EFD+D + D  ++ ASDGVW+ +  E+I
Sbjct:  740 VPRALTRDHKPNIQTEAERIIQCGGRIDTFRDQ------------------------------EGNHLGPLRVWLKTENIPGLAMSRSIGDNLAT--SVGVTWEPEIFEFDID-KDDKFMIVASDGVWEFIENEEI 842          
BLAST of mRNA_Ecto-sp13_S_contig1074.676.1 vs. uniprot
Match: A0A1R2D4K4_9CILI (PPM-type phosphatase domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2D4K4_9CILI)

HSP 1 Score: 73.9 bits (180), Expect = 9.590e-11
Identity = 52/143 (36.36%), Postives = 65/143 (45.45%), Query Frame = 1
Query:  682 RLSRDHKPESKGELERIRAAGGIVFPLPRSGSCGGLGAGGVTGGAPPTAAGSKKGLIAAARGIAAGTPRVWTTSGDGPGLAMSRSIGDKARTRASVGVTYEPEITEFDLDPRSDVMLVFASDGVWDVLSA-EDIRKVRAFKPL 1107
            RL+ D +P  K ELERI+ AGG V  L                                  G+  G  RVW  +G  PGLAMSRSIGD       +GV   P    F  D  +D+ LV ASDG+WDV++  E I  +  F+PL
Sbjct:  212 RLTIDQRPNIKEELERIKKAGGKVQQLSNE------------------------------NGVKIGPYRVWKKTGTLPGLAMSRSIGDAIGKE--IGVISTPMCNSFMFDKSTDLFLVIASDGIWDVMNCTEVINFIDKFRPL 322          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1074.676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8E8_ECTSI1.620e-17977.87PPM-type phosphatase domain-containing protein n=1... [more]
A0A835ZAZ3_9STRA5.790e-1439.74Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A835YZ58_9STRA1.110e-1341.79Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A1R2CT32_9CILI1.050e-1138.62PPM-type phosphatase domain-containing protein n=1... [more]
A0A0D2MZT2_9CHLO1.790e-1136.08Protein-serine/threonine phosphatase n=1 Tax=Monor... [more]
A0A699ZLF7_HAELA2.290e-1137.32Protein phosphatase 2C-like protein (Fragment) n=1... [more]
A0A383VME8_TETOB2.370e-1138.06Protein-serine/threonine phosphatase n=1 Tax=Tetra... [more]
A0A1R2B349_9CILI2.600e-1138.46PPM-type phosphatase domain-containing protein n=2... [more]
I7MJK6_TETTS2.700e-1138.24Protein phosphatase 2c n=1 Tax=Tetrahymena thermop... [more]
A0A1R2D4K4_9CILI9.590e-1136.36PPM-type phosphatase domain-containing protein n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1074contigEcto-sp13_S_contig1074:16425..19253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score518.5
Seed ortholog evalue2.7e-144
Seed eggNOG ortholog2880.D7G8E8
Model size1131
KEGG koko:K04403,ko:K14803,ko:K17500
KEGG Pathwayko04010,ko04064,ko04380,ko04620,ko04621,ko04668,ko05140,ko05145,ko05168,ko05169,map04010,map04064,map04380,map04620,map04621,map04668,map05140,map05145,map05168,map05169
KEGG ModuleM00686
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
Ec32 ortholog descriptionProtein phosphatase 2C (PP2C)-like domain
Ec32 orthologEc-14_002780.1
EC3.1.3.16
Cds size1131
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462551.1538901-CDS-Ecto-sp13_S_contig1074:16424..165051681462551.1538901-CDS-Ecto-sp13_S_contig1074:16424..16505Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1074 16425..16505 +
1681462551.1821532-CDS-Ecto-sp13_S_contig1074:17205..172991681462551.1821532-CDS-Ecto-sp13_S_contig1074:17205..17299Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1074 17206..17299 +
1681462551.1907349-CDS-Ecto-sp13_S_contig1074:17638..177441681462551.1907349-CDS-Ecto-sp13_S_contig1074:17638..17744Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1074 17639..17744 +
1681462551.1985464-CDS-Ecto-sp13_S_contig1074:18054..187381681462551.1985464-CDS-Ecto-sp13_S_contig1074:18054..18738Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1074 18055..18738 +
1681462551.2628472-CDS-Ecto-sp13_S_contig1074:19087..192531681462551.2628472-CDS-Ecto-sp13_S_contig1074:19087..19253Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1074 19088..19253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1074.676.1prot_Ecto-sp13_S_contig1074.676.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1074 16425..19253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1074.676.1

>prot_Ecto-sp13_S_contig1074.676.1 ID=prot_Ecto-sp13_S_contig1074.676.1|Name=mRNA_Ecto-sp13_S_contig1074.676.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=377bp
MVRLEGRWASAGSKEPNVGVYSIAGEKAYDPLWKNQDAGLVIAPVDRREG
QALFAIFDGHGKNGGQASRECMERLPKHLASASSQSGSPASALRRSCQRL
HHDLATGVAGDCGRSGTTLCAAVLTGRRLTVANVGDSGCLRLLRSTAAAS
SGPSPSPGAAAAAIPGKAMLASDRGAPDVVDRAGGARGSGTSNRRRLRTA
EKLIAGADAGEEAAPGGGSRGRGLVMERLSRDHKPESKGELERIRAAGGI
VFPLPRSGSCGGLGAGGVTGGAPPTAAGSKKGLIAAARGIAAGTPRVWTT
SGDGPGLAMSRSIGDKARTRASVGVTYEPEITEFDLDPRSDVMLVFASDG
VWDVLSAEDIRKVRAFKPLRVHRTVN*
back to top

mRNA from alignment at Ecto-sp13_S_contig1074:16425..19253+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1074.676.1 ID=mRNA_Ecto-sp13_S_contig1074.676.1|Name=mRNA_Ecto-sp13_S_contig1074.676.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2829bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1074:16425..19253+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCAGGCTGGAGGGTCGGTGGGCGTCGGCTGGCTCAAAGGAACCCAA TGTTGGCGTTTACTCCATTGCAGGAGAGAAGGTGAGCAAGAGGTTCACCT TTTTTATGAGAGCTTTCGCTTCGATCCAGATGAACTTGATCGAAATTTGA CATGTACACATTTGTTTTCAAGAATAGTACCTCCCTTGGCGTTGTGACAC CAAGGACGACGATTCTTGAAAAGTAGACAAGACGATGAACTGGATGGAGA TCAGAACGATTGACAAGTGTGAGGACAGTATTGACCGCTACATCGACCTC TCACAACACGATACTTTTGAATCTGTACGGCTGTCGCTGTACGTACGAGT ACCACGTGGTGTGCCAGTCATGCTGACGAGGTACTGCCTACGGTTCACAC CTGTACGGACGGCGGGGGGAGCACTTGTTCGTGCACTCATGCTTATCGTC TGCTCCCCAGTTGTGTATAGGTTCCAAATCTGTGGGTCAAGGCGGTACCT CGGGACTGTACTACTCCGGGAAGTCTCCAAACGGGACGGAAAGAAACCAT GACAGGAAAACGGCAGAATGCTTTTTCTCTCTTTGAGTGTGAATCTCACA ACAACTTGCAGCTGGCCCTGCGCATGCCGAAGGAAGACGTTGGTCGCACC CGGCGTTGGCTCACACGATAGATCTTGCGCGGCATACGTTGGCGCACACA CACATTTTCCGAGCATGGGCTTTTGTCGCCTGTTGCCTTGCCCATGTACT CCTTCGAATGGCCCTTGTGCGCGTGTCACAGGCGTATGATCCCCTATGGA AAAACCAGGATGCTGGTCTTGTCATCGCACCCGTCGACCGGAGGGAGGGC CAAGCTCTATTTGCTATTTTTGATGGTGAGGGCGCTCAGCGTACTCATCA TGAGATTGGTTCGGCTCTACACAATCGTGCTGCACCACTCGGAAGCAGCA ACATTCTTACACAGACCGCTCATACGCCGTTGCACGACGCCAGGTAGCTA GCTCCCAGCGTTTGGCGCAGCAACACGTTGGAAGAAAGAGAGAGTCGGCT AAGTGCTCCAGGGATACGTCGACGTGCACGTAGTAACAACTCTTGGCTCG AACTTCAGTCACGTCTTACACGCGACCTTCTCTCTAGACCCTGCTTGTAC GACGAGACCTCAACCATAGAAACTACGTCGCGAGGCTAACGGCACCACGC CTTGCGCTGTAAAGGTCACGGGAAGAACGGGGGGCAAGCATCTCGCGAGT GCATGGAGCGCCTGCCCAAGCACCTGGCGTCTGCTTCTTCTCAATCTGGG AGTCCCGCGTCGGCGCTCAGGTAGGCAGTATGTGCGCCAGACTCATCCTC GTTGTTCAAGAAACCGCTGTCAGGGCATTAAGTTTTCCCTACCACCCAAC GTCATTTGGACGCACTCCTCTGGCTGTGCCACCCGCGGGCGTTCCCGAAC GGGAAAGAACAACCCGAACACCTGTTCGATCACGCTCCTTTGGTCACACA AAAATATGTGGTGCGGACGATGATTAGTGCCTGCGTGCCGAGCACACCCG CCCCATTGAACGATCTTCGTTTTTTGTGTGTGGTGGTACCCCCCCCTACC CTTCCCCCAACGGACACGAAATCGACTCAGGCGAAGCTGCCAACGTTTGC ATCACGATCTCGCCACCGGGGTTGCCGGCGACTGCGGTCGTAGCGGGACG ACTCTGTGCGCGGCAGTCCTCACGGGGCGACGGCTCACGGTCGCGAACGT CGGAGATTCCGGCTGCTTGCGCCTATTACGCAGTACCGCTGCCGCAAGTA GCGGTCCTTCTCCCTCGCCCGGCGCCGCCGCCGCCGCTATTCCCGGCAAA GCCATGCTTGCGAGTGATCGTGGCGCGCCTGATGTCGTAGACAGAGCCGG GGGCGCAAGGGGAAGCGGCACGAGCAACAGGAGGAGGTTGAGAACGGCGG AGAAGTTGATTGCGGGTGCGGATGCTGGTGAAGAAGCGGCACCGGGAGGA GGCAGTCGGGGCAGGGGGCTGGTCATGGAGCGGCTGTCCCGCGACCACAA GCCGGAGAGCAAGGGCGAGCTGGAGAGGATCCGGGCCGCCGGCGGGATTG TTTTCCCTCTCCCCAGGAGTGGCAGTTGCGGCGGTTTAGGGGCAGGTGGT GTCACCGGAGGGGCTCCGCCAACGGCGGCAGGCTCGAAGAAAGGATTAAT TGCGGCAGCAAGAGGGATTGCAGCGGGGACCCCAAGGGTATGGACCACAA GCGGCGACGGTCCTGGGCTGGCGATGAGCAGGTCCATTGGCGACAAGGCG AGGACACGCGCCTCGTTTCTCAAGATTCTTGAACGGCACTCTCATGGCGG TGCTGTCGTGCTGTAGGACCTACCTGCTCAAGTTTGGCCACGTTTCGCTG GTTTGTCATGAAAGGATCCTGTCGATTGGTGCTCTGTTGTTGCGGGAGTA ACTGTAACTCCGAAGACAGTCCACGTGAGGTTCGCTCCGAACGGATTGGA GGTCCACCCGTCACCGGTGGGTATGATGTGTTGTCATGTAGTATGCTCTC AGGTTTACGAGGTTGATCCATACTACATAGTTCCAGAACAGCGCACGAAT CAACCCTGTCGTGCTTGCTACTGTTTCCTCCGTTTCATTCCGACTGTGCC AGATGGCCCACAGCGTGGGCGTGACTTACGAACCCGAAATAACCGAGTTC GACCTAGACCCACGGAGCGACGTGATGCTCGTTTTCGCCTCCGACGGGGT TTGGGATGTTTTGAGCGCGGAAGACATTCGTAAGGTGCGGGCGTTCAAAC CCCTGAGAGTACACCGAACAGTAAATTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1074:16425..19253+

>mRNA_Ecto-sp13_S_contig1074.676.1 ID=mRNA_Ecto-sp13_S_contig1074.676.1|Name=mRNA_Ecto-sp13_S_contig1074.676.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1131bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1074:16425..19253+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCAGGCTGGAGGGTCGGTGGGCGTCGGCTGGCTCAAAGGAACCCAA
TGTTGGCGTTTACTCCATTGCAGGAGAGAAGGCGTATGATCCCCTATGGA
AAAACCAGGATGCTGGTCTTGTCATCGCACCCGTCGACCGGAGGGAGGGC
CAAGCTCTATTTGCTATTTTTGATGGTCACGGGAAGAACGGGGGGCAAGC
ATCTCGCGAGTGCATGGAGCGCCTGCCCAAGCACCTGGCGTCTGCTTCTT
CTCAATCTGGGAGTCCCGCGTCGGCGCTCAGGCGAAGCTGCCAACGTTTG
CATCACGATCTCGCCACCGGGGTTGCCGGCGACTGCGGTCGTAGCGGGAC
GACTCTGTGCGCGGCAGTCCTCACGGGGCGACGGCTCACGGTCGCGAACG
TCGGAGATTCCGGCTGCTTGCGCCTATTACGCAGTACCGCTGCCGCAAGT
AGCGGTCCTTCTCCCTCGCCCGGCGCCGCCGCCGCCGCTATTCCCGGCAA
AGCCATGCTTGCGAGTGATCGTGGCGCGCCTGATGTCGTAGACAGAGCCG
GGGGCGCAAGGGGAAGCGGCACGAGCAACAGGAGGAGGTTGAGAACGGCG
GAGAAGTTGATTGCGGGTGCGGATGCTGGTGAAGAAGCGGCACCGGGAGG
AGGCAGTCGGGGCAGGGGGCTGGTCATGGAGCGGCTGTCCCGCGACCACA
AGCCGGAGAGCAAGGGCGAGCTGGAGAGGATCCGGGCCGCCGGCGGGATT
GTTTTCCCTCTCCCCAGGAGTGGCAGTTGCGGCGGTTTAGGGGCAGGTGG
TGTCACCGGAGGGGCTCCGCCAACGGCGGCAGGCTCGAAGAAAGGATTAA
TTGCGGCAGCAAGAGGGATTGCAGCGGGGACCCCAAGGGTATGGACCACA
AGCGGCGACGGTCCTGGGCTGGCGATGAGCAGGTCCATTGGCGACAAGGC
GAGGACACGCGCCTCCGTGGGCGTGACTTACGAACCCGAAATAACCGAGT
TCGACCTAGACCCACGGAGCGACGTGATGCTCGTTTTCGCCTCCGACGGG
GTTTGGGATGTTTTGAGCGCGGAAGACATTCGTAAGGTGCGGGCGTTCAA
ACCCCTGAGAGTACACCGAACAGTAAATTAG
back to top