mRNA_Ecto-sp13_S_contig1073.669.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1073.669.1 vs. uniprot
Match: D8LLE7_ECTSI (Coatomer protein complex, gamma sub-unit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE7_ECTSI) HSP 1 Score: 298 bits (764), Expect = 4.100e-102 Identity = 153/155 (98.71%), Postives = 153/155 (98.71%), Query Frame = 1
Query: 1 MMNDMPGGXXXXXGGFNDPMGGDKPITVTSVLKEFQGLKDKFKNEDEDDFSPYQDLEKATVLQECRVFSDSNVVTNNPRRCGMLITKLLYILNTGETLSSSETTEVFFGVTKLFQSQDHNLRRMMYLFIKEVAETCDPDDVIIGEGVNRSRNRTF 465
MMNDMPGGXXXXXGGFNDPMGGDKPITVTSVLKEFQGLKDKFKNEDEDDFSPYQDLEKATVLQECRVFSDSNVVTNNPRRCGMLITKLLYILNTGETLSSSETTEVFFGVTKLFQSQDHNLRRMMYLFIKEVAETCDPDDVIIGEG NRSRNRT
Sbjct: 1 MMNDMPGGXXXXXGGFNDPMGGDKPITVTSVLKEFQGLKDKFKNEDEDDFSPYQDLEKATVLQECRVFSDSNVVTNNPRRCGMLITKLLYILNTGETLSSSETTEVFFGVTKLFQSQDHNLRRMMYLFIKEVAETCDPDDVIIGEGANRSRNRTI 155
BLAST of mRNA_Ecto-sp13_S_contig1073.669.1 vs. uniprot
Match: A0A836CC02_9STRA (Coatomer subunit gamma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC02_9STRA) HSP 1 Score: 186 bits (472), Expect = 8.550e-52 Identity = 93/123 (75.61%), Postives = 106/123 (86.18%), Query Frame = 1
Query: 64 GDKPITVTSVLKEFQGLKDKFKNED-EDDFSPYQDLEKATVLQECRVFSDSNVVTNNPRRCGMLITKLLYILNTGETLSSSETTEVFFGVTKLFQSQDHNLRRMMYLFIKEVAETCDPDDVII 429
GD P+T+ VLKE QGLKDKFK+ED ED+ SPY LEKATVLQECR F+DSNVVTNNP+RC LITKLL++L GET +SSE T+VFFGVTKLFQS+DHNLRRMMYLFIKEVAE +P+DVII
Sbjct: 18 GDAPLTIGGVLKEIQGLKDKFKSEDGEDEASPYHALEKATVLQECRAFNDSNVVTNNPKRCCQLITKLLHLLTQGETFTSSEVTDVFFGVTKLFQSKDHNLRRMMYLFIKEVAEATNPNDVII 140
BLAST of mRNA_Ecto-sp13_S_contig1073.669.1 vs. uniprot
Match: A0A4D9D1Q3_9STRA (Adaptin_N domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1Q3_9STRA) HSP 1 Score: 180 bits (457), Expect = 5.740e-51 Identity = 89/121 (73.55%), Postives = 104/121 (85.95%), Query Frame = 1
Query: 67 DKPITVTSVLKEFQGLKDKFKNEDEDDFSPYQDLEKATVLQECRVFSDSNVVTNNPRRCGMLITKLLYILNTGETLSSSETTEVFFGVTKLFQSQDHNLRRMMYLFIKEVAETCDPDDVII 429
D +TV++V+KE Q LKDKFKN+DED FSPYQDLEKA+VLQECRVF D+N+VT +PR C LITKLL+IL+ GE L+S ETT VFFGVTKLFQS + NLRRMMYLFIKE+AE C+PDDVII
Sbjct: 26 DGSLTVSNVMKEIQVLKDKFKNDDEDHFSPYQDLEKASVLQECRVFHDANIVTQDPRLCCQLITKLLHILSQGEQLTSVETTTVFFGVTKLFQSHNSNLRRMMYLFIKEMAEACNPDDVII 146
BLAST of mRNA_Ecto-sp13_S_contig1073.669.1 vs. uniprot
Match: I2CP15_NANGC (Adaptin_N domain-containing protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CP15_NANGC) HSP 1 Score: 180 bits (457), Expect = 1.670e-50 Identity = 89/121 (73.55%), Postives = 104/121 (85.95%), Query Frame = 1
Query: 67 DKPITVTSVLKEFQGLKDKFKNEDEDDFSPYQDLEKATVLQECRVFSDSNVVTNNPRRCGMLITKLLYILNTGETLSSSETTEVFFGVTKLFQSQDHNLRRMMYLFIKEVAETCDPDDVII 429
D +TV++V+KE Q LKDKFKN+DED FSPYQDLEKA+VLQECRVF D+N+VT +PR C LITKLL+IL+ GE L+S ETT VFFGVTKLFQS + NLRRMMYLFIKE+AE C+PDDVII
Sbjct: 26 DGSLTVSNVMKEIQVLKDKFKNDDEDHFSPYQDLEKASVLQECRVFHDANIVTQDPRLCCQLITKLLHILSQGEQLTSVETTTVFFGVTKLFQSHNSNLRRMMYLFIKEMAEACNPDDVII 146
BLAST of mRNA_Ecto-sp13_S_contig1073.669.1 vs. uniprot
Match: A0A6S8VPR0_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8VPR0_9STRA) HSP 1 Score: 179 bits (454), Expect = 5.560e-50 Identity = 86/118 (72.88%), Postives = 102/118 (86.44%), Query Frame = 1
Query: 76 ITVTSVLKEFQGLKDKFKNEDEDDFSPYQDLEKATVLQECRVFSDSNVVTNNPRRCGMLITKLLYILNTGETLSSSETTEVFFGVTKLFQSQDHNLRRMMYLFIKEVAETCDPDDVII 429
+T++S++KEFQGLKDKFK ED D SP+ DLEKATVLQECRVFSDS VVT +PR+C LITKLL+I+ G+ +SSSE TEVFFGVTKLFQS D +LRRM+Y FIKEVAETC+PDD+II
Sbjct: 40 LTISSMVKEFQGLKDKFKREDADSPSPFSDLEKATVLQECRVFSDSKVVTESPRKCSQLITKLLHIVTQGDAMSSSEVTEVFFGVTKLFQSSDASLRRMIYFFIKEVAETCNPDDIII 157
BLAST of mRNA_Ecto-sp13_S_contig1073.669.1 vs. uniprot
Match: A0A6U1MSQ3_9STRA (Coatomer subunit gamma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MSQ3_9STRA) HSP 1 Score: 181 bits (458), Expect = 6.820e-50 Identity = 91/123 (73.98%), Postives = 106/123 (86.18%), Query Frame = 1
Query: 61 GGDKPITVTSVLKEFQGLKDKFKNEDEDDFSPYQDLEKATVLQECRVFSDSNVVTNNPRRCGMLITKLLYILNTGETLSSSETTEVFFGVTKLFQSQDHNLRRMMYLFIKEVAETCDPDDVII 429
G + +TV+S++KE QGLK+KFK ED D SP+ DLEKA VLQECR FSDSNVVT++P+RC LITKLL+IL+TG+T SSSETTEVFFGVTKLFQS D NLRRMMYLFIKEVA+ C+PDDVII
Sbjct: 9 GDSRALTVSSMIKEIQGLKEKFKGED-DRTSPFADLEKAAVLQECRAFSDSNVVTHHPQRCSHLITKLLHILSTGDTFSSSETTEVFFGVTKLFQSHDANLRRMMYLFIKEVADNCNPDDVII 130
BLAST of mRNA_Ecto-sp13_S_contig1073.669.1 vs. uniprot
Match: A0A7S3ZYC8_9STRA (Hypothetical protein (Fragment) n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZYC8_9STRA) HSP 1 Score: 179 bits (454), Expect = 1.010e-49 Identity = 86/118 (72.88%), Postives = 102/118 (86.44%), Query Frame = 1
Query: 76 ITVTSVLKEFQGLKDKFKNEDEDDFSPYQDLEKATVLQECRVFSDSNVVTNNPRRCGMLITKLLYILNTGETLSSSETTEVFFGVTKLFQSQDHNLRRMMYLFIKEVAETCDPDDVII 429
+T++S++KEFQGLKDKFK ED D SP+ DLEKATVLQECRVFSDS VVT +PR+C LITKLL+I+ G+ +SSSE TEVFFGVTKLFQS D +LRRM+Y FIKEVAETC+PDD+II
Sbjct: 40 LTISSMVKEFQGLKDKFKREDADSPSPFSDLEKATVLQECRVFSDSKVVTESPRKCSQLITKLLHIVTQGDAMSSSEVTEVFFGVTKLFQSSDASLRRMIYFFIKEVAETCNPDDIII 157
BLAST of mRNA_Ecto-sp13_S_contig1073.669.1 vs. uniprot
Match: A0A7S2S5Q9_9STRA (Coatomer subunit gamma n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5Q9_9STRA) HSP 1 Score: 179 bits (453), Expect = 3.240e-49 Identity = 88/118 (74.58%), Postives = 104/118 (88.14%), Query Frame = 1
Query: 76 ITVTSVLKEFQGLKDKFKNEDEDDFSPYQDLEKATVLQECRVFSDSNVVTNNPRRCGMLITKLLYILNTGETLSSSETTEVFFGVTKLFQSQDHNLRRMMYLFIKEVAETCDPDDVII 429
+TV+S++KE QGLKDKFK+ED++ SP+QDLEKATVLQECR F+ + VVT NPRRC LITKLL+I+ GE+L+S+E TEVFFGVTKLFQSQD LRRMMYLFIKEVAETC+PDDVII
Sbjct: 12 LTVSSMIKEIQGLKDKFKDEDDEMPSPFQDLEKATVLQECRCFNQAEVVTQNPRRCATLITKLLHIVTQGESLTSTEVTEVFFGVTKLFQSQDPYLRRMMYLFIKEVAETCNPDDVII 129
BLAST of mRNA_Ecto-sp13_S_contig1073.669.1 vs. uniprot
Match: F0Y6T5_AURAN (Coatomer subunit gamma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6T5_AURAN) HSP 1 Score: 176 bits (447), Expect = 2.220e-48 Identity = 86/118 (72.88%), Postives = 102/118 (86.44%), Query Frame = 1
Query: 76 ITVTSVLKEFQGLKDKFKNEDEDDFSPYQDLEKATVLQECRVFSDSNVVTNNPRRCGMLITKLLYILNTGETLSSSETTEVFFGVTKLFQSQDHNLRRMMYLFIKEVAETCDPDDVII 429
+T++S++KE QGLKDKFK ED D SP+ DLEKATVLQECRVFSDS VVT++PR+C LITKLL+I+ G+ +SSSE TEVFFGVTKLFQS D +LRRM+Y FIKEVAETC+PDDVII
Sbjct: 14 LTLSSMVKEIQGLKDKFKREDADSPSPFADLEKATVLQECRVFSDSKVVTDSPRKCSQLITKLLHIVTQGDAMSSSEVTEVFFGVTKLFQSSDASLRRMVYFFIKEVAETCNPDDVII 131
BLAST of mRNA_Ecto-sp13_S_contig1073.669.1 vs. uniprot
Match: F0YM71_AURAN (Coatomer subunit gamma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YM71_AURAN) HSP 1 Score: 172 bits (435), Expect = 8.850e-47 Identity = 84/118 (71.19%), Postives = 101/118 (85.59%), Query Frame = 1
Query: 76 ITVTSVLKEFQGLKDKFKNEDEDDFSPYQDLEKATVLQECRVFSDSNVVTNNPRRCGMLITKLLYILNTGETLSSSETTEVFFGVTKLFQSQDHNLRRMMYLFIKEVAETCDPDDVII 429
++++S++KE QGLKDKFK ED D SP+ DLEKATVLQECRVFSD+ VVT +PR+C LITKLL+I+ G+ +SSSE TEVFFGVTKLFQS D +LRRM+Y FIKEVAETC+PDDVII
Sbjct: 11 LSLSSMVKEIQGLKDKFKREDADCPSPFADLEKATVLQECRVFSDAKVVTESPRKCSQLITKLLHIVTQGDAMSSSEVTEVFFGVTKLFQSTDASLRRMVYFFIKEVAETCNPDDVII 128 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1073.669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1073.669.1 >prot_Ecto-sp13_S_contig1073.669.1 ID=prot_Ecto-sp13_S_contig1073.669.1|Name=mRNA_Ecto-sp13_S_contig1073.669.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=155bp MMNDMPGGPGGPGGGFNDPMGGDKPITVTSVLKEFQGLKDKFKNEDEDDFback to top mRNA from alignment at Ecto-sp13_S_contig1073:2468..4712+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1073.669.1 ID=mRNA_Ecto-sp13_S_contig1073.669.1|Name=mRNA_Ecto-sp13_S_contig1073.669.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2245bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1073:2468..4712+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1073:2468..4712+ >mRNA_Ecto-sp13_S_contig1073.669.1 ID=mRNA_Ecto-sp13_S_contig1073.669.1|Name=mRNA_Ecto-sp13_S_contig1073.669.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=465bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1073:2468..4712+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |