mRNA_Ecto-sp13_S_contig10724.666.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10724.666.1 vs. uniprot
Match: D7FUD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD8_ECTSI) HSP 1 Score: 856 bits (2211), Expect = 1.650e-294 Identity = 526/699 (75.25%), Postives = 545/699 (77.97%), Query Frame = 1
Query: 1 LPPDYPASCNAQVGRWLTFFHSDTVRSVLERAFSSITVSWTHDAGIHRSGIMPLAGQRQDLLAWFTDDFSGAAAIPAPRLLAAGPISMRASGSGRVPAVRDWTPASRPGVVRGYDTTRSRARRYFARAPEWAAIGAETAAAAAGPASAPKQQEEVMPLAGTQMPSAQQSPARAAPVVTRESARVSGRSSPSPKPPPTITLPSSGRASEAAVVTNGVGSDASGFEEANGVPVITAAAVAGPPARASGLRAPRVGQASAGATAGGAPAAAGAASGPGVAFTVETSEVVLAVELRSTSAPQSAAPIAPAAAAAAPGV-VAGLAVVSDGSAASSPLTGAGGIAGDRRKKAWKARKAARLVSADFSEQPSRRQGKRQAXXXXXXRAKAARERRSAAFQPDAEHGNSPTTATAASGGSGNAVTTAVASKTLSRPTGRPEDLAISALNRARRPGGAREGTKGQRSSNKNADGFDNGVGLGAKGCVIDEDIRQQERYMQYWKQXXXXXXXXXXXXXXPEEGFVWGATSPEPHGRQEEGGGVTARKFTLQEWREENEGAQKEKEEKXXXXXXXXXEEETKRVNGRPASPQAPSGAPDQGATHAAASTDSEGRCYDKEVALSKKLLSFKEAESFLALNVPGVEGVYSMGQTIGISIRGDGNCFWTSCCLAVLLWALCQDCSRQLQDLLARYRAIRRGSRAHDALSLDMK 2094
L D +S + VGRWLTFF SDTVR+VLE AFSSIT SWTHDAG+ RSGIMPLAGQRQDL AW TD+F AAA+PAPRLLAA PIS RASGSGRVPAVRDWTPAS PGVVRGYDTTR+RARRYFARAPEWAAIG ETAA EV+PLAGTQMPSAQQSPARAAPVVT E+ARVSGRSSPS +TLPS GRAS AAVVTNGVG+DASG EEANGV VITAAA AGPPARASGLRAP ASAGATAGG A AG+ASGPGVAFT+ET EVVL VE RSTS QSA A VAGLAV SDGSAASSPLTGAGGIAGDRRKKAW+ARKAAR VSA FSEQPSRRQGKR+A RAKA RERRS A QP AEHGNS TT TAA GGSGNAV TAV SKTL RP GRPEDLAISALNR RR GGAR TKGQRSSNKNA GFD G G GAKG A SPEPH RQEE G V RKFTLQEWREENEGA+K+ XXXXXXXXX E T+RVNGRPASPQAPSG DQGATHAAASTDSEGRCYDKEVALSKKLLS KEAESFLALNVPGVEGVYSMGQTIGISIRGDGNCFWTSCCLAVLLWALCQDCS+QLQDLLARYRAIRRGSRAHDALSLDMK
Sbjct: 533 LEVDIRSSGSTDVGRWLTFFQSDTVRNVLEEAFSSITASWTHDAGVRRSGIMPLAGQRQDLHAWLTDNFPVAAAVPAPRLLAADPISTRASGSGRVPAVRDWTPASSPGVVRGYDTTRNRARRYFARAPEWAAIGEETAAXXXXXXXXXXXXXEVVPLAGTQMPSAQQSPARAAPVVTSETARVSGRSSPSXXXXXXVTLPSRGRASAAAVVTNGVGADASGLEEANGVRVITAAAAAGPPARASGLRAP----ASAGATAGGDLATAGSASGPGVAFTMETGEVVLVVEPRSTSVSQSAVSAAXXXXXXXXXXXVAGLAVASDGSAASSPLTGAGGIAGDRRKKAWQARKAARSVSAIFSEQPSRRQGKREAKRQEECRAKAGRERRSPAVQPGAEHGNSSTTVTAAIGGSGNAVPTAVRSKTLGRPAGRPEDLAISALNRVRRQGGARGATKGQRSSNKNAAGFDKGGGSGAKG-----------------------------------------AASPEPHARQEERGDVKVRKFTLQEWREENEGAEKKXXXXXXXXXXXXXXEGTERVNGRPASPQAPSGVSDQGATHAAASTDSEGRCYDKEVALSKKLLSLKEAESFLALNVPGVEGVYSMGQTIGISIRGDGNCFWTSCCLAVLLWALCQDCSQQLQDLLARYRAIRRGSRAHDALSLDMK 1186
BLAST of mRNA_Ecto-sp13_S_contig10724.666.1 vs. uniprot
Match: D7FJL7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJL7_ECTSI) HSP 1 Score: 392 bits (1008), Expect = 2.930e-117 Identity = 350/727 (48.14%), Postives = 406/727 (55.85%), Query Frame = 1
Query: 19 ASCNAQVGRWLTFFHSDTVRSVLERAFSSITVSWTHDAGIHRSGIMPLAGQRQDLLAWFTDDFS-GAAAIPAPRLLAAGPISMRASGSGRVPAVRDWTPASRPGVVRGYDTTRSRARRYFARAPE--WAAIGAETAAAAAGPASAPKQQEEVMPLAGTQMPSAQQSPARAAPVVTRESARVSGRSSPSPKPPPTI--TLPSSGRASEAAVVTNGVGSDASGFEEANGVPVITAAAVAG------------PPARASGLRAPRVGQASA--GATAGGAPAAAGAASGPGVAFTVETSEVVLAVELRSTSAPQSAAPIAPAAAAAAPGVVAGLAVVSDGSAASSPLTGAGGIAGDRRKKAWKARKAARLVSADFSEQPSRRQGKRQAXXXXXXRAKAARERRSAAFQPDAEHGNS--PTTATAA-SGGSGNAVTTAVASKTLSRPTGRPEDLAISALNRARRPGGAREGTKGQRSSNKNADGFDNGVGLGAKGCVIDEDIRQQERYMQYWKQXXXXXXXXXXXXXXPEEGFVWGATSPEPHGRQEEGGGVTARKFT------------LQEWREENEGAQKEKEEKXXXXXXXXXEEETKRVNGRPASPQAPSGAPDQGATHAAASTDSEGRCYDKEVALSKKLLSFKEAESFLALNVPGVEGVYSMGQTIGISIRGDGNCFWTSCCLAVLLWALCQDCSRQLQDLLARYRAIRRGS-RAHDALSLDMK 2094
+S + +GRWLTF SDTVR++LE AF+S+ VSWTH AG+ RSG++ A Q QDL A TD + GAA+ PAPRL A I SG GRV V D T A RP V+ G+ R ARA + W A G E AA AGPAS +QQEEV LAG M SA Q ARAA R+ R SG S PS K P TLPS G A++ N + G P T+ A A P A A + P Q S GA++ P G+ G TS RS PQ P A SPLTGAGGIA KK RK + VSA E +RR+ K Q KAA+ R SA QP AE S TATA GG GN TAVA K L +P GR DL ++AL++A GG + T+GQRSS+ N G + G G GA+G V+ +++RQQER ++YW Q XXXXX PEEG V GA SPEPH QE GGGV R++ +E REENE XXXXXXXXX E +RVNGRPAS APS A DQG THAAAS+D EGRCYD+EVA SKKLLSF++AESFLA N+PGVE VYSMGQTIGISIRGDGNCFWTSC LA LLWA CQD LQD+LARYRAI RGS RA+ ALSL MK
Sbjct: 454 SSGSTDMGRWLTFLQSDTVRTILEEAFASVVVSWTH-AGVRRSGLVTPARQSQDLHAVLTDTYPVGAASAPAPRLCAPDAIPTPVSGEGRVSVVGDRTHALRPAVMGGH--------RAPARALDNGWPANGEEFAATQAGPASTARQQEEVAHLAGAHMTSAPQLAARAAQSTARDYGRASGTSRPSAKAAPAALATLPSRGGVLAASLARNRGEASGGDHVRIGGTPATTSPARAAETGGGGSSEHAVPSAMAEPV--PSTAQLSCWRGASSFQDPPITGSNGNGGA-----TSSGGEFGGARSEGKPQQ--PAAXXXXXXXXXXXXXXXXXXXXXXXXSPLTGAGGIAETGGKKV---RKKTKPVSAAVLEVRNRRREKIQ--------EKAAQRRSSAVAQPVAEPRESLPGNTATAELGGGGGNTEPTAVAKKNLRKP-GRAPDLGVAALHKALWGGGGKRATQGQRSSSNNVAGLNTGKGSGAQGWVLQKEMRQQERCIRYWNQQXXXXXE-------PEEGLVQGAGSPEPHAWQEAGGGVKVREYAPEXXXXXXXXXXXEEQREENERXXXXXXXXXXXXXXXXXXXEAERVNGRPASHMAPSCAADQGTTHAAASSDFEGRCYDEEVAKSKKLLSFEDAESFLAKNLPGVEDVYSMGQTIGISIRGDGNCFWTSCSLAALLWASCQDRLHHLQDILARYRAICRGSCRAYYALSLAMK 1143
BLAST of mRNA_Ecto-sp13_S_contig10724.666.1 vs. uniprot
Match: A0A6H5KNV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV9_9PHAE) HSP 1 Score: 322 bits (824), Expect = 2.800e-100 Identity = 221/286 (77.27%), Postives = 232/286 (81.12%), Query Frame = 1
Query: 988 PLTGAGGIAGDRRKKAWKARKAARLVSADFSEQPSRRQGKRQAXXXXXXRAKAARERRSAAFQPDAEHGNSPTTATAASGGSGNAVTTAVASKTLSRPTGRPEDLAISALNRARRPGGAREGTKGQRSSNKNADGFDNGVGLGAKGCVIDEDIRQQERYMQYWKQXXXXXXXXXXXXXXPEEGFVWGATSPEPHGRQEEGGGVTARKFTLQEWREENEGAQKEKEEKXXXXXXXXXEEETKRVNGRPASPQAPSGAPDQGATHAAASTDSEGRCYDKEVALSKKLL 1845
PL GAGGIAGDRRKKAW+ARKAAR VSADFSEQP XXXXXX AKA R+R SA QP AEHGNSPTTAT ASGGSGNAVTTAVASKTLSRPTGRPEDLAISALNRARRPGGAR TKGQRSSNKNA GFDNG G GAKGCVI+EDI R XXXXXXXXXXXXXXP+EGFV GA SPEPH RQE GGVT RK TLQE REENEGA+K++E XXXXXX EEET+RVN RPASPQA SGAPDQGA HAAASTDSEGRCYDKE++ L+
Sbjct: 57 PLIGAGGIAGDRRKKAWQARKAARSVSADFSEQPXXXXXXXXXXXXXXXXAKAGRDRPSATVQPGAEHGNSPTTATVASGGSGNAVTTAVASKTLSRPTGRPEDLAISALNRARRPGGARGATKGQRSSNKNAAGFDNGGGSGAKGCVIEEDI---PREXXXXXXXXXXXXXXXXXXXXPKEGFVQGAASPEPHARQEAEGGVTVRKLTLQEGREENEGAEKKEEXXXXXXXXNGKEEETERVNARPASPQASSGAPDQGAIHAAASTDSEGRCYDKEMSQRMSLV 339
BLAST of mRNA_Ecto-sp13_S_contig10724.666.1 vs. uniprot
Match: A0A6H5KW95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW95_9PHAE) HSP 1 Score: 330 bits (846), Expect = 4.170e-96 Identity = 340/780 (43.59%), Postives = 398/780 (51.03%), Query Frame = 1
Query: 112 VSWTHDAGIHRSGIMPLAGQRQDLLAWFTDDFSGAAA-IPAPRLLAAGPISMRASGSGRVPAVRDWTPASRPGVVRGYDTTRSRARRYFARAPE--WAAIGAETAAAAAGPASAPKQQEEVMPLAGTQMPSAQQSPARAAPVVTRESARVSGRSSPSPKPPP--TITLPSSGRASEAAVVTNGVGSDASGFEEANGVPVITAAAVAGPPARASGLRAPRVGQASAGATAGGAPAA------------AGAASGPGVAFTVETSEVVLAVELRSTSAPQSAAP----------IAPAAAAAAPGVVAGLAVVSDGSAASSP-LTGA---------GGIAGDRRKKAW--------------------------------------------KARKAARLVSADFSEQPSRRQGKRQAXXXXXXRAKAARERRSAAFQPDAEHGNSPT--TATAASGGSGNAVTTAVASKTLSRPTGRPEDLAISALNRARRPGGAREGTKGQRSSNKNADGFDNGVGLGAKGCVIDEDIRQQERYMQYWKQXXXXXXXXXXXXXXPEEGFVWGATSPEPHGRQEEGGGVTARKFT------------------------------------LQEWREENEGAQKEKEEKXXXXXXXXXEEETKRVNGRPASPQAPSGAPDQGATHAAASTDSEGRCYDKEVALSKKLLSFKEAESFLALNVPGVEGVYSMGQTIGISIRGDGNCFWTSCCLAVLLWALCQDCSRQLQDLLARYRAIRRGSRAHDALSLDMK 2094
+SWT+ AG+ RSG+M Q QDL A TD + AAA PAPRL A PI SG+GRV AV T ASRP V+ G+DT RSRARR RA + W A G E AA AG AS +QQEEV+ LAG M SA Q ARAA R SG SSP + P + TLPS A++V N VG+ SG +EA+ VP+ + AA AG P ASG R R G+A GA G P A +GAA P + V +T++P AA + PA A P A L+ D S+ P +TG+ GG G R + K RK + VSA E +RR+ K Q KAA+ R A Q AE S TATA G G+ TAV K L +P GR DL ++AL++A G G DN G GA+G V+ + +RQQER ++YW XXXXXXXXXXXXXX EG V GA PEPH QEEGGGV RK+ REENE +K XXXXXXXXX E +RVNGRPAS AP A DQG HAAAS+ EGRCYD+EVA SKKLLSF++AESFLA N+PGVE VYSMGQTIGISIRGDGNCFWTSC L LLWA CQD LQD+LARYRAI RGS A+ ALSL MK
Sbjct: 1 MSWTY-AGVRRSGLMAPVVQSQDLRAVLTDTYPVAAASAPAPRLCAPDPIPTPVSGAGRVSAVGYRTHASRPAVMGGHDTPRSRARRASTRALDNRWPANGEEFAATQAGAASTARQQEEVVHLAGAHMTSAPQLAARAAQSTARHYPGASGTSSPPARAAPAASATLPSRRGVLAASLVRNRVGTGGSGLQEASRVPMASTAAAAGSPDHASGRRPTRTGKAGGGADPGAGPNATAAXXXXXXXXRSGAAIAPSNKGEASGGDHVETGGTPATTSPAQAAETGGGGSREHAVPPAMAEPVPST-AQLSCWRDASSFQDPPITGSNGNGGATPSGGEFGGARSEGKPQQPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKVRKKTKPVSAAVLEVRNRRREKIQ--------EKAAQRRSPAVAQLVAEPSESLPRHTATAELVGGGSTEPTAVGKKKLRKP-GRTPDLGVAALHKALWGGXXXXXXXXXXXXXXXXXGLDNRGGSGAQGWVLQKQMRQQERCIRYWNXXXXXXXXXXXXXXXXXEGLVKGAGYPEPHAWQEEGGGVKVRKYAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQREENERVEKXXXXXXXXXXXXXXXXEAERVNGRPASHMAPFCAADQGKIHAAASSHFEGRCYDEEVAKSKKLLSFEDAESFLAKNLPGVEDVYSMGQTIGISIRGDGNCFWTSCSLTALLWASCQDHLHHLQDVLARYRAICRGSCAYYALSLAMK 769 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10724.666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10724.666.1 >prot_Ecto-sp13_S_contig10724.666.1 ID=prot_Ecto-sp13_S_contig10724.666.1|Name=mRNA_Ecto-sp13_S_contig10724.666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=704bp LPPDYPASCNAQVGRWLTFFHSDTVRSVLERAFSSITVSWTHDAGIHRSGback to top mRNA from alignment at Ecto-sp13_S_contig10724:561..5570- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10724.666.1 ID=mRNA_Ecto-sp13_S_contig10724.666.1|Name=mRNA_Ecto-sp13_S_contig10724.666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5010bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10724:561..5570- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10724:561..5570- >mRNA_Ecto-sp13_S_contig10724.666.1 ID=mRNA_Ecto-sp13_S_contig10724.666.1|Name=mRNA_Ecto-sp13_S_contig10724.666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2112bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10724:561..5570- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |