mRNA_Ecto-sp13_S_contig1072.662.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1072.662.1
Unique NamemRNA_Ecto-sp13_S_contig1072.662.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1072.662.1 vs. uniprot
Match: A0A6H5JDI2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI2_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 2.700e-39
Identity = 111/139 (79.86%), Postives = 115/139 (82.73%), Query Frame = 1 
Query:    1 MASPPYRPPLPQQEASTEITPECEDDCRLS-GNGFESASLEKQGTHNQGATTTDTSGPSACSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASSTPFAMAPTAMRLPTDSPARKRALDGSFSLSSSDEDQFCMTSSSRQ 414
            M SPPYR  LPQQEASTE TPE ED+C LS GNGFESASLEKQG+HNQGATTTDTSGPS CS     XXXXXXXXXXXXXXXXXXXXX   ASS P AMAPTA R PTDSPARKRA+DG  SLSS  ED+FCMTSSSRQ
Sbjct:    1 MDSPPYRQHLPQQEASTETTPEFEDNCPLSVGNGFESASLEKQGSHNQGATTTDTSGPSVCSDDDLDXXXXXXXXXXXXXXXXXXXXXSSTASSMPLAMAPTANRSPTDSPARKRAVDGGLSLSSG-EDEFCMTSSSRQ 138
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1072.662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDI2_9PHAE2.700e-3979.86RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1072contigEcto-sp13_S_contig1072:17886..18308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size423
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_006690.1
Cds size423
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462549.5315995-CDS-Ecto-sp13_S_contig1072:17885..183081681462549.5315995-CDS-Ecto-sp13_S_contig1072:17885..18308Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1072 17886..18308 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1072.662.1prot_Ecto-sp13_S_contig1072.662.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1072 17886..18308 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1072.662.1

>prot_Ecto-sp13_S_contig1072.662.1 ID=prot_Ecto-sp13_S_contig1072.662.1|Name=mRNA_Ecto-sp13_S_contig1072.662.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
MASPPYRPPLPQQEASTEITPECEDDCRLSGNGFESASLEKQGTHNQGAT
TTDTSGPSACSDDDLDDSSSVDSLHEESSSVAPPPRTSSTASSTPFAMAP
TAMRLPTDSPARKRALDGSFSLSSSDEDQFCMTSSSRQRG*
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mRNA from alignment at Ecto-sp13_S_contig1072:17886..18308-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1072.662.1 ID=mRNA_Ecto-sp13_S_contig1072.662.1|Name=mRNA_Ecto-sp13_S_contig1072.662.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1072:17886..18308- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTCCCCTCCGTACCGACCACCTCTTCCCCAGCAGGAGGCTTCCAC
AGAAATAACACCCGAATGTGAAGATGATTGCCGGCTGTCAGGCAACGGCT
TCGAATCGGCGTCGCTGGAGAAACAAGGCACCCACAACCAAGGTGCCACC
ACAACAGACACCAGCGGGCCATCGGCGTGCTCCGACGACGACCTGGATGA
TAGCAGTAGCGTCGACTCGCTGCACGAGGAATCATCATCTGTGGCCCCTC
CTCCACGCACCTCGTCAACCGCATCATCAACGCCCTTCGCGATGGCTCCG
ACGGCGATGAGGTTACCCACGGATTCCCCCGCGAGGAAAAGGGCTTTGGA
CGGCAGTTTCTCGTTATCATCATCAGACGAGGACCAGTTCTGCATGACGA
GCTCCAGTCGGCAGCGCGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1072:17886..18308-

>mRNA_Ecto-sp13_S_contig1072.662.1 ID=mRNA_Ecto-sp13_S_contig1072.662.1|Name=mRNA_Ecto-sp13_S_contig1072.662.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1072:17886..18308- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTCCCCTCCGTACCGACCACCTCTTCCCCAGCAGGAGGCTTCCAC
AGAAATAACACCCGAATGTGAAGATGATTGCCGGCTGTCAGGCAACGGCT
TCGAATCGGCGTCGCTGGAGAAACAAGGCACCCACAACCAAGGTGCCACC
ACAACAGACACCAGCGGGCCATCGGCGTGCTCCGACGACGACCTGGATGA
TAGCAGTAGCGTCGACTCGCTGCACGAGGAATCATCATCTGTGGCCCCTC
CTCCACGCACCTCGTCAACCGCATCATCAACGCCCTTCGCGATGGCTCCG
ACGGCGATGAGGTTACCCACGGATTCCCCCGCGAGGAAAAGGGCTTTGGA
CGGCAGTTTCTCGTTATCATCATCAGACGAGGACCAGTTCTGCATGACGA
GCTCCAGTCGGCAGCGCGGGTGA
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