mRNA_Ecto-sp13_S_contig10714.656.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10714.656.1
Unique NamemRNA_Ecto-sp13_S_contig10714.656.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10714.656.1 vs. uniprot
Match: D7FVY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVY1_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 2.220e-19
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1
Query:    1 HACSPEAECHNTDGGYECLCAEGYAGDGLTTGQGCVDV 114
            HACSPEAECHNTDGGYECLCAEGYAGDGLTTGQGCVDV
Sbjct:  344 HACSPEAECHNTDGGYECLCAEGYAGDGLTTGQGCVDV 381          
BLAST of mRNA_Ecto-sp13_S_contig10714.656.1 vs. uniprot
Match: Q8WPL1_OIKDI (Fibrillin-like protein n=1 Tax=Oikopleura dioica TaxID=34765 RepID=Q8WPL1_OIKDI)

HSP 1 Score: 57.8 bits (138), Expect = 1.120e-8
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 1
Query:    1 HACSPEAECHNTDGGYECLCAEGYAGDGLTTGQGCVDV 114
            H C  EA C+N +GGYECLCA+G+ GDG+T G  C D+
Sbjct: 1609 HMCFNEATCNNFEGGYECLCADGFEGDGMTNGDNCTDI 1646          
BLAST of mRNA_Ecto-sp13_S_contig10714.656.1 vs. uniprot
Match: E4XDJ5_OIKDI (Oikosin 19 n=2 Tax=Oikopleura dioica TaxID=34765 RepID=E4XDJ5_OIKDI)

HSP 1 Score: 55.5 bits (132), Expect = 7.360e-8
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 1
Query:    1 HACSPEAECHNTDGGYECLCAEGYAGDGLTTGQGCVDV 114
            H C  +A C+N +G YECLCA+G+ GDGLT G  C D+
Sbjct: 1050 HMCFSDATCNNFEGSYECLCADGFEGDGLTNGDNCTDI 1087          
BLAST of mRNA_Ecto-sp13_S_contig10714.656.1 vs. uniprot
Match: L8GSC1_ACACA (Calcium binding egf domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GSC1_ACACA)

HSP 1 Score: 50.8 bits (120), Expect = 3.160e-6
Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = 1
Query:    1 HACSPEAECHNTDGGYECLCAEGYAGDGL 87
            HACS  AEC NT GGYEC+C EG+AGDG 
Sbjct:  242 HACSENAECINTIGGYECVCKEGFAGDGF 270          
BLAST of mRNA_Ecto-sp13_S_contig10714.656.1 vs. uniprot
Match: A0A7M7PDJ2_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7PDJ2_STRPU)

HSP 1 Score: 50.1 bits (118), Expect = 5.920e-6
Identity = 19/31 (61.29%), Postives = 23/31 (74.19%), Query Frame = 1
Query:    7 CSPEAECHNTDGGYECLCAEGYAGDGLTTGQ 99
            C P A+C NT+GGYEC C EGY GDG++  Q
Sbjct:  333 CDPNAQCDNTEGGYECECNEGYVGDGISCNQ 363          
BLAST of mRNA_Ecto-sp13_S_contig10714.656.1 vs. uniprot
Match: A0A830B2C7_9LAMI (Wall-associated receptor kinase 2 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830B2C7_9LAMI)

HSP 1 Score: 48.5 bits (114), Expect = 2.080e-5
Identity = 18/31 (58.06%), Postives = 25/31 (80.65%), Query Frame = 1
Query:   16 EAECHNTDGGYECLCAEGYAGDGLTTGQGCV 108
            E +C NT GG++C+C EGY+GDG T G+GC+
Sbjct:  308 EKKCVNTPGGFQCVCPEGYSGDGRTDGKGCI 338          
BLAST of mRNA_Ecto-sp13_S_contig10714.656.1 vs. uniprot
Match: A0A2N2JEN4_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14 TaxID=2013741 RepID=A0A2N2JEN4_9DELT)

HSP 1 Score: 47.4 bits (111), Expect = 5.290e-5
Identity = 17/26 (65.38%), Postives = 21/26 (80.77%), Query Frame = 1
Query:    7 CSPEAECHNTDGGYECLCAEGYAGDG 84
            C P A CHNT+GGY+C+C  G+AGDG
Sbjct: 1857 CDPNATCHNTEGGYDCVCDAGFAGDG 1882          
BLAST of mRNA_Ecto-sp13_S_contig10714.656.1 vs. uniprot
Match: A0A0M3KDW6_ANISI (Dumpy (inferred by orthology to a D. melanogaster protein) n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3KDW6_ANISI)

HSP 1 Score: 47.4 bits (111), Expect = 5.340e-5
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 1
Query:    7 CSPEAECHNTDGGYECLCAEGYAGDGLTTGQGCVDV 114
            CSP+A C NT+GGYEC+C +G+ GDG T    C D+
Sbjct:   18 CSPDAYCVNTEGGYECVCRDGFMGDGET----CFDI 49          
BLAST of mRNA_Ecto-sp13_S_contig10714.656.1 vs. uniprot
Match: UPI00106A238F (protein kinase C-binding protein NELL2-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106A238F)

HSP 1 Score: 45.4 bits (106), Expect = 7.960e-5
Identity = 20/38 (52.63%), Postives = 23/38 (60.53%), Query Frame = 1
Query:    1 HACSPEAECHNTDGGYECLCAEGYAGDGLTTGQGCVDV 114
            H C   A C+NT G Y+CLC  GY+GDG T    C DV
Sbjct:   32 HDCDGNANCNNTPGSYQCLCINGYSGDGRT----CTDV 65          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10714.656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FVY1_ECTSI2.220e-19100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
Q8WPL1_OIKDI1.120e-857.89Fibrillin-like protein n=1 Tax=Oikopleura dioica T... [more]
E4XDJ5_OIKDI7.360e-855.26Oikosin 19 n=2 Tax=Oikopleura dioica TaxID=34765 R... [more]
L8GSC1_ACACA3.160e-672.41Calcium binding egf domain containing protein n=1 ... [more]
A0A7M7PDJ2_STRPU5.920e-661.29Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]
A0A830B2C7_9LAMI2.080e-558.06Wall-associated receptor kinase 2 n=1 Tax=Phtheiro... [more]
A0A2N2JEN4_9DELT5.290e-565.38Uncharacterized protein (Fragment) n=1 Tax=Deltapr... [more]
A0A0M3KDW6_ANISI5.340e-555.56Dumpy (inferred by orthology to a D. melanogaster ... [more]
UPI00106A238F7.960e-552.63protein kinase C-binding protein NELL2-like n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10714contigEcto-sp13_S_contig10714:1179..1292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score87.4
Seed ortholog evalue1.5e-15
Seed eggNOG ortholog2880.D7FVY1
Model size114
KEGG koko:K05120
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.calcium ion binding
EggNOG OGsKOG1217@1,KOG1217@2759
EC2.7.10.1
Cds size114
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko01020,ko04050
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462549.046291-CDS-Ecto-sp13_S_contig10714:1178..12921681462549.046291-CDS-Ecto-sp13_S_contig10714:1178..1292Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10714 1179..1292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10714.656.1prot_Ecto-sp13_S_contig10714.656.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10714 1179..1292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10714.656.1

>prot_Ecto-sp13_S_contig10714.656.1 ID=prot_Ecto-sp13_S_contig10714.656.1|Name=mRNA_Ecto-sp13_S_contig10714.656.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=38bp
HACSPEAECHNTDGGYECLCAEGYAGDGLTTGQGCVDV
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mRNA from alignment at Ecto-sp13_S_contig10714:1179..1292-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10714.656.1 ID=mRNA_Ecto-sp13_S_contig10714.656.1|Name=mRNA_Ecto-sp13_S_contig10714.656.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10714:1179..1292- (Ectocarpus species13 EcNAP12_S_4_19m)
CACGCCTGTTCCCCGGAGGCAGAGTGCCACAACACCGACGGCGGGTATGA GTGTCTCTGTGCGGAGGGCTACGCCGGGGACGGTCTAACCACCGGACAGG GGTGCGTCGACGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10714:1179..1292-

>mRNA_Ecto-sp13_S_contig10714.656.1 ID=mRNA_Ecto-sp13_S_contig10714.656.1|Name=mRNA_Ecto-sp13_S_contig10714.656.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10714:1179..1292- (Ectocarpus species13 EcNAP12_S_4_19m)
CACGCCTGTTCCCCGGAGGCAGAGTGCCACAACACCGACGGCGGGTATGA
GTGTCTCTGTGCGGAGGGCTACGCCGGGGACGGTCTAACCACCGGACAGG
GGTGCGTCGACGTC
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