mRNA_Ecto-sp13_S_contig10712.653.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10712.653.1
Unique NamemRNA_Ecto-sp13_S_contig10712.653.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10712.653.1 vs. uniprot
Match: A0A6H5JIJ8_9PHAE (Vacuolar protein sorting-associated protein 51 homolog (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIJ8_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 2.060e-30
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1
Query:    1 REVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSLEG 195
            REVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSLEG
Sbjct:   93 REVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSLEG 157          
BLAST of mRNA_Ecto-sp13_S_contig10712.653.1 vs. uniprot
Match: D8LRL8_ECTSI (Vacuolar protein sorting-associated protein 51 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRL8_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 2.080e-30
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1
Query:    1 REVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSLEG 195
            REVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSLEG
Sbjct:   93 REVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSLEG 157          
BLAST of mRNA_Ecto-sp13_S_contig10712.653.1 vs. uniprot
Match: A0A1V4JPY9_PATFA (Vacuolar protein sorting-associated protein 51 homolog n=1 Tax=Patagioenas fasciata monilis TaxID=372326 RepID=A0A1V4JPY9_PATFA)

HSP 1 Score: 81.6 bits (200), Expect = 9.990e-18
Identity = 49/86 (56.98%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    1 REVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSLEGESRRGR--AQTAIGGTGRWGL 252
            RE++ LDSDMQ L+YENYNKFISATDTIRKM  +   ME EM DL ++M  I+ SSA V+ +L+   RRG   A TA G  GR G+
Sbjct:   74 REIRALDSDMQTLLYENYNKFISATDTIRKMKVDFRRMEAEMDDLAANMAAISTSSARVSAALQDRHRRGAQLAGTARGRGGRAGV 159          
BLAST of mRNA_Ecto-sp13_S_contig10712.653.1 vs. uniprot
Match: A0A7S3C5Y6_9EUKA (Vacuolar protein sorting-associated protein 51 homolog (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3C5Y6_9EUKA)

HSP 1 Score: 79.7 bits (195), Expect = 1.220e-17
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 1
Query:    4 EVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSLEGESRRG 210
            E+K LDSDMQMLVYENYNKFISATDTIRKM   VE ME++M  L+++M  IA  S +VN+SL   +RRG
Sbjct:   34 EIKSLDSDMQMLVYENYNKFISATDTIRKMKHRVEDMESQMLQLETNMGTIAIKSESVNSSLS--ARRG 100          
BLAST of mRNA_Ecto-sp13_S_contig10712.653.1 vs. uniprot
Match: A0A0D2LXM7_9CHLO (Vacuolar protein sorting-associated protein 51 homolog n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LXM7_9CHLO)

HSP 1 Score: 80.9 bits (198), Expect = 5.420e-17
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 1
Query:    1 REVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSLE 192
            RE+K LDSDMQ LVYENYNKFI+ATDTI+ M  NV+GME +M  LK  M+ +A+ SA+VN  L+
Sbjct:  109 REIKNLDSDMQQLVYENYNKFIAATDTIKVMKSNVDGMEGDMDKLKGIMDDVADKSASVNAKLQ 172          
BLAST of mRNA_Ecto-sp13_S_contig10712.653.1 vs. uniprot
Match: A0A8J6CHT6_DIALT (Vacuolar protein sorting-associated protein 51 homolog n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CHT6_DIALT)

HSP 1 Score: 82.4 bits (202), Expect = 1.710e-16
Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = 1
Query:    4 EVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSLEGESRRGRAQTAIG 231
            E+K LDSDMQMLVYENYNKFISATDTIR M Q VEGM+ +M+ L ++ME I ES+ ++++ + G  RRG+ +   G
Sbjct:   64 EIKSLDSDMQMLVYENYNKFISATDTIRAMKQKVEGMDEQMNQLAANMETIIESNRSISSHVSG--RRGQLEKLNG 137          
BLAST of mRNA_Ecto-sp13_S_contig10712.653.1 vs. uniprot
Match: A0A7S2S0E2_9STRA (Vacuolar protein sorting-associated protein 51 homolog n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0E2_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.720e-16
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1
Query:    4 EVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSL 189
            E+K LDSDMQMLVYENYNKFI+ATDTIR M QNVE ME EM  L +SM+ IA+ S  +N+SL
Sbjct:  110 EIKALDSDMQMLVYENYNKFITATDTIRSMKQNVESMEGEMDILVASMDEIADKSEHINSSL 171          
BLAST of mRNA_Ecto-sp13_S_contig10712.653.1 vs. uniprot
Match: A0A383VMJ6_TETOB (Vacuolar protein sorting-associated protein 51 homolog n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VMJ6_TETOB)

HSP 1 Score: 82.0 bits (201), Expect = 2.340e-16
Identity = 40/63 (63.49%), Postives = 51/63 (80.95%), Query Frame = 1
Query:    1 REVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSL 189
            RE+K LDSDMQ LVYENYNKFI+ATDTIR M  NV+GME++M  LK++M+ +A+ S+ VN  L
Sbjct:   97 REIKNLDSDMQQLVYENYNKFIAATDTIRAMKTNVDGMESDMERLKTNMDTVADKSSAVNQKL 159          
BLAST of mRNA_Ecto-sp13_S_contig10712.653.1 vs. uniprot
Match: A0A7S2DPT5_9STRA (Vacuolar protein sorting-associated protein 51 homolog (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DPT5_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.350e-16
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    4 EVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSL 189
            EVK LDSDMQMLVYENYNKFI+AT+TIRKM  NV+ M+ EM  L  +M  IA+ S  VN SL
Sbjct:   14 EVKALDSDMQMLVYENYNKFIAATETIRKMKHNVDSMDAEMDTLVGNMATIADCSEVVNASL 75          
BLAST of mRNA_Ecto-sp13_S_contig10712.653.1 vs. uniprot
Match: UPI0006B76D47 (vacuolar protein sorting-associated protein 51 homolog n=1 Tax=Zonotrichia albicollis TaxID=44394 RepID=UPI0006B76D47)

HSP 1 Score: 78.6 bits (192), Expect = 2.680e-16
Identity = 42/70 (60.00%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    1 REVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSLEGESRRG 210
            RE++ LDSDMQ L+YENYNKFISATDTIRKM  +   ME EM DL ++M  I+ SSA V+ +L+   RRG
Sbjct:   90 REIRALDSDMQTLLYENYNKFISATDTIRKMKVDFRHMEAEMDDLAANMAAISASSARVSAALQDRHRRG 159          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10712.653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIJ8_9PHAE2.060e-30100.00Vacuolar protein sorting-associated protein 51 hom... [more]
D8LRL8_ECTSI2.080e-30100.00Vacuolar protein sorting-associated protein 51 hom... [more]
A0A1V4JPY9_PATFA9.990e-1856.98Vacuolar protein sorting-associated protein 51 hom... [more]
A0A7S3C5Y6_9EUKA1.220e-1765.22Vacuolar protein sorting-associated protein 51 hom... [more]
A0A0D2LXM7_9CHLO5.420e-1762.50Vacuolar protein sorting-associated protein 51 hom... [more]
A0A8J6CHT6_DIALT1.710e-1657.89Vacuolar protein sorting-associated protein 51 hom... [more]
A0A7S2S0E2_9STRA1.720e-1669.35Vacuolar protein sorting-associated protein 51 hom... [more]
A0A383VMJ6_TETOB2.340e-1663.49Vacuolar protein sorting-associated protein 51 hom... [more]
A0A7S2DPT5_9STRA2.350e-1666.13Vacuolar protein sorting-associated protein 51 hom... [more]
UPI0006B76D472.680e-1660.00vacuolar protein sorting-associated protein 51 hom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10712contigEcto-sp13_S_contig10712:1685..1936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score106.3
Seed ortholog evalue6.3e-21
Seed eggNOG ortholog2880.D8LRL8
Model size252
KEGG rclassRC00002,RC00043
KEGG koko:K00928,ko:K14946,ko:K20296
KEGG ReactionR00480
KEGG Pathwayko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230
KEGG ModuleM00016,M00017,M00018,M00033,M00525,M00526,M00527
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.endocytic recycling
EggNOG OGsKOG2346@1,KOG2346@2759
EC2.7.2.4
Cds size225
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462548.8925345-CDS-Ecto-sp13_S_contig10712:1684..19091681462548.8925345-CDS-Ecto-sp13_S_contig10712:1684..1909Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10712 1685..1909 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462548.9046433-UTR-Ecto-sp13_S_contig10712:1909..19361681462548.9046433-UTR-Ecto-sp13_S_contig10712:1909..1936Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10712 1910..1936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10712.653.1prot_Ecto-sp13_S_contig10712.653.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10712 1685..1909 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10712.653.1

>prot_Ecto-sp13_S_contig10712.653.1 ID=prot_Ecto-sp13_S_contig10712.653.1|Name=mRNA_Ecto-sp13_S_contig10712.653.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
MQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATV
NTSLEGESRRGRAQTAIGGTGRWGL
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mRNA from alignment at Ecto-sp13_S_contig10712:1685..1936-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10712.653.1 ID=mRNA_Ecto-sp13_S_contig10712.653.1|Name=mRNA_Ecto-sp13_S_contig10712.653.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10712:1685..1936- (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGAGGTGAAGAAGCTCGACTCCGACATGCAGATGCTGGTGTACGAGAA CTACAACAAGTTCATCAGCGCCACGGACACCATCCGCAAGATGGCGCAGA ACGTGGAGGGCATGGAGACAGAGATGTCGGACCTGAAGAGCAGCATGGAG CGAATCGCGGAGAGCAGCGCAACGGTCAACACGTCGCTCGAGGGTGAGAG CAGGAGAGGGAGAGCGCAGACAGCAATCGGGGGTACGGGGCGTTGGGGCC TC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10712:1685..1936-

>mRNA_Ecto-sp13_S_contig10712.653.1 ID=mRNA_Ecto-sp13_S_contig10712.653.1|Name=mRNA_Ecto-sp13_S_contig10712.653.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10712:1685..1936- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGATGCTGGTGTACGAGAACTACAACAAGTTCATCAGCGCCACGGA
CACCATCCGCAAGATGGCGCAGAACGTGGAGGGCATGGAGACAGAGATGT
CGGACCTGAAGAGCAGCATGGAGCGAATCGCGGAGAGCAGCGCAACGGTC
AACACGTCGCTCGAGGGTGAGAGCAGGAGAGGGAGAGCGCAGACAGCAAT
CGGGGGTACGGGGCGTTGGGGCCTC
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