mRNA_Ecto-sp13_S_contig10712.653.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10712.653.1 vs. uniprot
Match: A0A6H5JIJ8_9PHAE (Vacuolar protein sorting-associated protein 51 homolog (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIJ8_9PHAE) HSP 1 Score: 122 bits (305), Expect = 2.060e-30 Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1
Query: 1 REVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSLEG 195
REVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSLEG
Sbjct: 93 REVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSLEG 157
BLAST of mRNA_Ecto-sp13_S_contig10712.653.1 vs. uniprot
Match: D8LRL8_ECTSI (Vacuolar protein sorting-associated protein 51 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRL8_ECTSI) HSP 1 Score: 122 bits (305), Expect = 2.080e-30 Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1
Query: 1 REVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSLEG 195
REVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSLEG
Sbjct: 93 REVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSLEG 157
BLAST of mRNA_Ecto-sp13_S_contig10712.653.1 vs. uniprot
Match: A0A1V4JPY9_PATFA (Vacuolar protein sorting-associated protein 51 homolog n=1 Tax=Patagioenas fasciata monilis TaxID=372326 RepID=A0A1V4JPY9_PATFA) HSP 1 Score: 81.6 bits (200), Expect = 9.990e-18 Identity = 49/86 (56.98%), Postives = 60/86 (69.77%), Query Frame = 1
Query: 1 REVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSLEGESRRGR--AQTAIGGTGRWGL 252
RE++ LDSDMQ L+YENYNKFISATDTIRKM + ME EM DL ++M I+ SSA V+ +L+ RRG A TA G GR G+
Sbjct: 74 REIRALDSDMQTLLYENYNKFISATDTIRKMKVDFRRMEAEMDDLAANMAAISTSSARVSAALQDRHRRGAQLAGTARGRGGRAGV 159
BLAST of mRNA_Ecto-sp13_S_contig10712.653.1 vs. uniprot
Match: A0A7S3C5Y6_9EUKA (Vacuolar protein sorting-associated protein 51 homolog (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3C5Y6_9EUKA) HSP 1 Score: 79.7 bits (195), Expect = 1.220e-17 Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 1
Query: 4 EVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSLEGESRRG 210
E+K LDSDMQMLVYENYNKFISATDTIRKM VE ME++M L+++M IA S +VN+SL +RRG
Sbjct: 34 EIKSLDSDMQMLVYENYNKFISATDTIRKMKHRVEDMESQMLQLETNMGTIAIKSESVNSSLS--ARRG 100
BLAST of mRNA_Ecto-sp13_S_contig10712.653.1 vs. uniprot
Match: A0A0D2LXM7_9CHLO (Vacuolar protein sorting-associated protein 51 homolog n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LXM7_9CHLO) HSP 1 Score: 80.9 bits (198), Expect = 5.420e-17 Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 1
Query: 1 REVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSLE 192
RE+K LDSDMQ LVYENYNKFI+ATDTI+ M NV+GME +M LK M+ +A+ SA+VN L+
Sbjct: 109 REIKNLDSDMQQLVYENYNKFIAATDTIKVMKSNVDGMEGDMDKLKGIMDDVADKSASVNAKLQ 172
BLAST of mRNA_Ecto-sp13_S_contig10712.653.1 vs. uniprot
Match: A0A8J6CHT6_DIALT (Vacuolar protein sorting-associated protein 51 homolog n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CHT6_DIALT) HSP 1 Score: 82.4 bits (202), Expect = 1.710e-16 Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = 1
Query: 4 EVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSLEGESRRGRAQTAIG 231
E+K LDSDMQMLVYENYNKFISATDTIR M Q VEGM+ +M+ L ++ME I ES+ ++++ + G RRG+ + G
Sbjct: 64 EIKSLDSDMQMLVYENYNKFISATDTIRAMKQKVEGMDEQMNQLAANMETIIESNRSISSHVSG--RRGQLEKLNG 137
BLAST of mRNA_Ecto-sp13_S_contig10712.653.1 vs. uniprot
Match: A0A7S2S0E2_9STRA (Vacuolar protein sorting-associated protein 51 homolog n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0E2_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 1.720e-16 Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1
Query: 4 EVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSL 189
E+K LDSDMQMLVYENYNKFI+ATDTIR M QNVE ME EM L +SM+ IA+ S +N+SL
Sbjct: 110 EIKALDSDMQMLVYENYNKFITATDTIRSMKQNVESMEGEMDILVASMDEIADKSEHINSSL 171
BLAST of mRNA_Ecto-sp13_S_contig10712.653.1 vs. uniprot
Match: A0A383VMJ6_TETOB (Vacuolar protein sorting-associated protein 51 homolog n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VMJ6_TETOB) HSP 1 Score: 82.0 bits (201), Expect = 2.340e-16 Identity = 40/63 (63.49%), Postives = 51/63 (80.95%), Query Frame = 1
Query: 1 REVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSL 189
RE+K LDSDMQ LVYENYNKFI+ATDTIR M NV+GME++M LK++M+ +A+ S+ VN L
Sbjct: 97 REIKNLDSDMQQLVYENYNKFIAATDTIRAMKTNVDGMESDMERLKTNMDTVADKSSAVNQKL 159
BLAST of mRNA_Ecto-sp13_S_contig10712.653.1 vs. uniprot
Match: A0A7S2DPT5_9STRA (Vacuolar protein sorting-associated protein 51 homolog (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DPT5_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 2.350e-16 Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 1
Query: 4 EVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSL 189
EVK LDSDMQMLVYENYNKFI+AT+TIRKM NV+ M+ EM L +M IA+ S VN SL
Sbjct: 14 EVKALDSDMQMLVYENYNKFIAATETIRKMKHNVDSMDAEMDTLVGNMATIADCSEVVNASL 75
BLAST of mRNA_Ecto-sp13_S_contig10712.653.1 vs. uniprot
Match: UPI0006B76D47 (vacuolar protein sorting-associated protein 51 homolog n=1 Tax=Zonotrichia albicollis TaxID=44394 RepID=UPI0006B76D47) HSP 1 Score: 78.6 bits (192), Expect = 2.680e-16 Identity = 42/70 (60.00%), Postives = 52/70 (74.29%), Query Frame = 1
Query: 1 REVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSLEGESRRG 210
RE++ LDSDMQ L+YENYNKFISATDTIRKM + ME EM DL ++M I+ SSA V+ +L+ RRG
Sbjct: 90 REIRALDSDMQTLLYENYNKFISATDTIRKMKVDFRHMEAEMDDLAANMAAISASSARVSAALQDRHRRG 159 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10712.653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10712.653.1 >prot_Ecto-sp13_S_contig10712.653.1 ID=prot_Ecto-sp13_S_contig10712.653.1|Name=mRNA_Ecto-sp13_S_contig10712.653.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp MQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVback to top mRNA from alignment at Ecto-sp13_S_contig10712:1685..1936- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10712.653.1 ID=mRNA_Ecto-sp13_S_contig10712.653.1|Name=mRNA_Ecto-sp13_S_contig10712.653.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10712:1685..1936- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10712:1685..1936- >mRNA_Ecto-sp13_S_contig10712.653.1 ID=mRNA_Ecto-sp13_S_contig10712.653.1|Name=mRNA_Ecto-sp13_S_contig10712.653.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10712:1685..1936- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |