mRNA_Ecto-sp13_S_contig10711.652.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10711.652.1
Unique NamemRNA_Ecto-sp13_S_contig10711.652.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10711.652.1 vs. uniprot
Match: D7G0K6_ECTSI (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K6_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 4.150e-49
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 1 
Query:    1 ITEVTARHILVKHKGSRRPASWQDPAGASIKQRTQAQATSILQGLRSGIKSQEDFSKVATARSDCSSAKRGGDLGTFGRGKMQ 249
            ITEVTARHILVKHKGSRRPASWQDPAGASIKQRTQAQA SILQGLRSGIKSQEDFSKVATARSDCSSAKRGGDLGTFGRGKMQ
Sbjct:   14 ITEVTARHILVKHKGSRRPASWQDPAGASIKQRTQAQAASILQGLRSGIKSQEDFSKVATARSDCSSAKRGGDLGTFGRGKMQ 96
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10711.652.1 vs. uniprot
Match: A0A6H5K9M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M4_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.280e-43
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 1 
Query:    1 ITEVTARHILVKHKGSRRPASWQDPAGASIKQRTQAQATSILQGLRSGIKSQEDFSKVATARSDCSSAKRGGDLGTFGRGKMQ 249
            ITEVTARHILVKHKGSRRPASWQDP+G SI+QRTQ QATSILQGLRSGIKSQEDFSKVATARSDCSSAKRGGDLGTFGRGKMQ
Sbjct:  392 ITEVTARHILVKHKGSRRPASWQDPSGVSIRQRTQGQATSILQGLRSGIKSQEDFSKVATARSDCSSAKRGGDLGTFGRGKMQ 474
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10711.652.1 vs. uniprot
Match: A0A836CKW2_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKW2_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.130e-25
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:   16 ARHILVKHKGSRRPASWQDPAGASIKQRTQAQATSILQGLRSGIKSQEDFSKVATARSDCSSAKRGGDLGTFGRGKMQ 249
            ARHILVKH+GSRRPASW+DP G  I  R++ QA ++L  +R+ I++ EDF++VA   SDCSSA+ GGDLG FG G+MQ
Sbjct:    3 ARHILVKHQGSRRPASWKDPEGIEISARSREQAIAMLNDIRASIRTPEDFARVAQTASDCSSARNGGDLGEFGPGQMQ 80
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10711.652.1 vs. uniprot
Match: A0A7S2Y508_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y508_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 3.670e-24
Identity = 47/82 (57.32%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:    1 ITEVTARHILVKHKGSRRPASWQDPAGASIKQRTQAQATSILQGLRSGIKSQEDFSKVATARSDCSSAKRGGDLGTFGRGKM 246
            +++V A H+L+KH GSRRPASW+DP G  I+ R++ QA  ILQ LRS I   EDF+ +A   SDCSSA+ GGDLG FG G+M
Sbjct:    1 MSQVRASHLLIKHSGSRRPASWKDPDGNEIRARSRDQAVQILQTLRSQISGPEDFANLAAQHSDCSSARNGGDLGPFGPGQM 82
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10711.652.1 vs. uniprot
Match: D8LM37_ECTSI (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM37_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 4.210e-22
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:   16 ARHILVKHKGSRRPASWQDPAGASIKQRTQAQATSILQGLRSGIKSQEDFSKVATARSDCSSAKRGGDLGTFGRGKM 246
            A HILVKH+GSRR ASW+D  G  IK RT+A+A ++L  LR+ I +QEDF+++A   SDC SA+ GGDLG FG G+M
Sbjct:    3 ASHILVKHQGSRRTASWKDVDGVVIKTRTKAEAINMLMDLRAKISTQEDFAEIAQEHSDCGSARAGGDLGEFGDGQM 79
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10711.652.1 vs. uniprot
Match: A0A0A0KZK7_CUCSA (Peptidyl-prolyl cis-trans isomerase n=9 Tax=Cucurbitaceae TaxID=3650 RepID=A0A0A0KZK7_CUCSA)

HSP 1 Score: 90.9 bits (224), Expect = 8.430e-22
Identity = 49/82 (59.76%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:    7 EVTARHILVKHKGSRRPASWQDPAGASIKQRTQAQATSILQGLRSGIKS-QEDFSKVATARSDCSSAKRGGDLGTFGRGKMQ 249
            +V A HIL+KH+GSRRPASW+DP G  IK  T+  A S L  +R+ I S +  F  +AT  SDCSSAKRGGDLG FGRG+MQ
Sbjct:    9 QVRASHILIKHQGSRRPASWKDPEGRIIKNTTRESAVSQLTVIRNDIISGKAKFEDIATRISDCSSAKRGGDLGPFGRGQMQ 90
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10711.652.1 vs. uniprot
Match: D8RQS5_SELML (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RQS5_SELML)

HSP 1 Score: 90.9 bits (224), Expect = 8.660e-22
Identity = 49/82 (59.76%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:    7 EVTARHILVKHKGSRRPASWQDPAGASIKQRTQAQATSILQGLRSGIKS-QEDFSKVATARSDCSSAKRGGDLGTFGRGKMQ 249
            +V A H+LVKH+GSRRPASW+DP G  I+  T  QA + L+ +R  I S +  FS +AT  SDCSSAKRGGDLG FGRG+MQ
Sbjct:   10 KVRASHLLVKHQGSRRPASWRDPEGLVIQNTTHEQAVAKLEHIRDEILSGRAKFSDLATQLSDCSSAKRGGDLGWFGRGQMQ 91
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10711.652.1 vs. uniprot
Match: A0A5J9TYI1_9POAL (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9TYI1_9POAL)

HSP 1 Score: 92.8 bits (229), Expect = 1.120e-21
Identity = 49/82 (59.76%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:    7 EVTARHILVKHKGSRRPASWQDPAGASIKQRTQAQATSILQGLRSGIKSQE-DFSKVATARSDCSSAKRGGDLGTFGRGKMQ 249
            +V A HIL+KH+GSRR ASW+DP G +I   T+  A  +++ LR  I S E  F  VAT  SDCSSAKRGGDLG+FGRGKMQ
Sbjct:   90 KVRASHILIKHEGSRRKASWRDPEGVAISATTRDDAADLVRALREQIVSGERKFEDVATENSDCSSAKRGGDLGSFGRGKMQ 171
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10711.652.1 vs. uniprot
Match: UPI0009014F9B (peptidyl-prolyl cis-trans isomerase Pin1 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI0009014F9B)

HSP 1 Score: 90.5 bits (223), Expect = 1.160e-21
Identity = 48/82 (58.54%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:    7 EVTARHILVKHKGSRRPASWQDPAGASIKQRTQAQATSILQGLRSGIKS-QEDFSKVATARSDCSSAKRGGDLGTFGRGKMQ 249
            +V A HIL+KH+GSRR +SW+DP GA I + T+ +A + L+ LR  I S + DF+ VA   SDCSSAKRGGDLG FGRG+MQ
Sbjct:    8 KVRASHILIKHQGSRRKSSWKDPEGAVISKTTRDEAVAQLKALRDDIVSGKADFNDVAARYSDCSSAKRGGDLGPFGRGQMQ 89
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10711.652.1 vs. uniprot
Match: UPI001FB13351 (peptidyl-prolyl cis-trans isomerase Pin1-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB13351)

HSP 1 Score: 90.1 bits (222), Expect = 1.520e-21
Identity = 49/82 (59.76%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:    7 EVTARHILVKHKGSRRPASWQDPAGASIKQRTQAQATSILQGLRSGIKS-QEDFSKVATARSDCSSAKRGGDLGTFGRGKMQ 249
            +V A HIL+KH+GSRR ASW+DP G  I   T+  A S L  +R  I S +  FS VAT +SDCSSAKRGGDLG+FGRG+MQ
Sbjct:    5 KVRASHILIKHQGSRRKASWKDPEGKIIMDTTKETAISKLTAIRDDITSGKAKFSDVATRQSDCSSAKRGGDLGSFGRGQMQ 86
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10711.652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0K6_ECTSI4.150e-4998.80Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectoca... [more]
A0A6H5K9M4_9PHAE1.280e-4395.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CKW2_9STRA4.130e-2560.26Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
A0A7S2Y508_9STRA3.670e-2457.32Peptidyl-prolyl cis-trans isomerase n=1 Tax=Fibroc... [more]
D8LM37_ECTSI4.210e-2258.44Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectoca... [more]
A0A0A0KZK7_CUCSA8.430e-2259.76Peptidyl-prolyl cis-trans isomerase n=9 Tax=Cucurb... [more]
D8RQS5_SELML8.660e-2259.76Peptidyl-prolyl cis-trans isomerase n=1 Tax=Selagi... [more]
A0A5J9TYI1_9POAL1.120e-2159.76Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
UPI0009014F9B1.160e-2158.54peptidyl-prolyl cis-trans isomerase Pin1 n=2 Tax=I... [more]
UPI001FB133511.520e-2159.76peptidyl-prolyl cis-trans isomerase Pin1-like n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10711contigEcto-sp13_S_contig10711:1594..2394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score159.8
Seed ortholog evalue5.3e-37
Seed eggNOG ortholog2880.D7G0K6
Preferred nameESS1
Model size249
KEGG koko:K02887,ko:K09578
KEGG Pathwayko03010,ko04622,map03010,map04622
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000413,GO:0000993,GO:0001098,GO:0001099,GO:0001932,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005886,GO:0005911,GO:0006139,GO:0006325,GO:0006351,GO:0006353,GO:0006355,GO:0006357,GO:0006366,GO:0006369,GO:0006396,GO:0006397,GO:0006457,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008213,GO:0009058,GO:0009059,GO:0009506,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009909,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0012505,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016569,GO:0016570,GO:0016571,GO:0016853,GO:0016859,GO:0018022,GO:0018023,GO:0018130,GO:0018193,GO:0018205,GO:0018208,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0030054,GO:0030162,GO:0031056,GO:0031057,GO:0031063,GO:0031064,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031330,GO:0031334,GO:0031399,GO:0031400,GO:0031401,GO:0031935,GO:0031937,GO:0032259,GO:0032268,GO:0032269,GO:0032270,GO:0032774,GO:0032784,GO:0032879,GO:0032880,GO:0033043,GO:0033044,GO:0034243,GO:0034641,GO:0034645,GO:0034654,GO:0034968,GO:0035303,GO:0035304,GO:0035306,GO:0035307,GO:0036211,GO:0042176,GO:0042177,GO:0042325,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043412,GO:0043414,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045861,GO:0045892,GO:0045893,GO:0045898,GO:0045899,GO:0045934,GO:0045935,GO:0045937,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048831,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051568,GO:0051726,GO:0055044,GO:0060255,GO:0060260,GO:0060261,GO:0060968,GO:0061187,GO:0065007,GO:0070063,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080182,GO:0090304,GO:0090311,GO:0097659,GO:0140096,GO:1901360,GO:1901362,GO:1901407,GO:1901564,GO:1901576,GO:1902275,GO:1902679,GO:1902680,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903506,GO:1903507,GO:1903508,GO:1905268,GO:1905269,GO:2000026,GO:2000058,GO:2000059,GO:2000112,GO:2000113,GO:2000142,GO:2000144,GO:2000241,GO:2000749,GO:2001141,GO:2001251,GO:2001252
Exons2
EggNOG free text desc.positive regulation of chromatin silencing at rDNA
EggNOG OGsCOG0760@1,KOG3259@2759
EC5.2.1.8
Cds size249
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03021,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462548.8510807-CDS-Ecto-sp13_S_contig10711:1593..17441681462548.8510807-CDS-Ecto-sp13_S_contig10711:1593..1744Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10711 1594..1744 -
1681462548.8616617-CDS-Ecto-sp13_S_contig10711:2296..23941681462548.8616617-CDS-Ecto-sp13_S_contig10711:2296..2394Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10711 2297..2394 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10711.652.1prot_Ecto-sp13_S_contig10711.652.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10711 1594..2394 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10711.652.1

>prot_Ecto-sp13_S_contig10711.652.1 ID=prot_Ecto-sp13_S_contig10711.652.1|Name=mRNA_Ecto-sp13_S_contig10711.652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=83bp
ITEVTARHILVKHKGSRRPASWQDPAGASIKQRTQAQATSILQGLRSGIK
SQEDFSKVATARSDCSSAKRGGDLGTFGRGKMQ
back to top

mRNA from alignment at Ecto-sp13_S_contig10711:1594..2394-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10711.652.1 ID=mRNA_Ecto-sp13_S_contig10711.652.1|Name=mRNA_Ecto-sp13_S_contig10711.652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=801bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10711:1594..2394- (Ectocarpus species13 EcNAP12_S_4_19m)
ATTACGGAGGTGACGGCAAGGCACATCCTGGTGAAGCACAAGGGGTCGCG
TCGCCCGGCCTCCTGGCAGGATCCCGCGGGGGCGTCCATCAAGCAGAGGT
ATGCACCTTGCAGTAGGAACCGCCTTCGCTTGAAATTCAGGAAAATATGT
GGTAGTTGGCGGCTACGCTTTTAAGAGAAGGTTGGCACAACCCAGTATTT
CTCTGTTCAACCTGGTTTTCTCAGAGACCGGACTGTGAAATGTACCTATT
TCTCATGGTCGTGACAGGGTTGTTTGACTGTCTTCAAGCGGTGTTCTCTC
TTAAATAGTCTTTTTTAAACCGTAACCGCCACATTAGAGTTTAGGTAGGA
GTAGGAGAAGTCGAGTGGTCGAGTGGTCGAAGTATTTGTAGAAGTGATGA
AAGTCGCTGTGTCCCTTCTCTTCGTCCGTTTTCGGTCCTTGATGCTTGTT
AACTCCGGGCTCCTGATCTACACGATCGCGCCATGCATCTACTTCTATGT
TTGAAGTTGGACTTGGGGACATGCGATATCTAGCCTGCAGGGCCTCCATG
ATGTTTTTTTTAACCCTCGTCATATATATATCCGGCCCCCTTACATATGT
GCATGTATGTGTACACCTCCGCCCCCTACGTTTTGTTCTTCGCATGGTAG
GACCCAGGCGCAGGCGACATCCATTCTGCAGGGCCTCCGTTCCGGCATCA
AGAGCCAGGAAGACTTCTCTAAGGTTGCTACGGCCAGGTCTGACTGCTCC
AGCGCCAAGCGCGGTGGCGACCTTGGCACGTTCGGCCGTGGCAAGATGCA
G
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10711:1594..2394-

>mRNA_Ecto-sp13_S_contig10711.652.1 ID=mRNA_Ecto-sp13_S_contig10711.652.1|Name=mRNA_Ecto-sp13_S_contig10711.652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10711:1594..2394- (Ectocarpus species13 EcNAP12_S_4_19m)
ATTACGGAGGTGACGGCAAGGCACATCCTGGTGAAGCACAAGGGGTCGCG
TCGCCCGGCCTCCTGGCAGGATCCCGCGGGGGCGTCCATCAAGCAGAGGA
CCCAGGCGCAGGCGACATCCATTCTGCAGGGCCTCCGTTCCGGCATCAAG
AGCCAGGAAGACTTCTCTAAGGTTGCTACGGCCAGGTCTGACTGCTCCAG
CGCCAAGCGCGGTGGCGACCTTGGCACGTTCGGCCGTGGCAAGATGCAG
back to top