mRNA_Ecto-sp13_S_contig107.640.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig107.640.1
Unique NamemRNA_Ecto-sp13_S_contig107.640.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig107.640.1 vs. uniprot
Match: D7G1U7_ECTSI (CUE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U7_ECTSI)

HSP 1 Score: 498 bits (1282), Expect = 1.280e-173
Identity = 326/335 (97.31%), Postives = 330/335 (98.51%), Query Frame = 1
Query:   46 MAEISTEDAVQQLHQMFGDYDKTALATVLEAHGGHVERTVEHLLSNPQAASGXXXXXXXXXXXXXXXASRGTDHDAALALQLSREWSDEPTNMPPPPVRPQGIPTPYGVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGDRRGRRVALPEQFLRTPGWTGGGAGEVSSDPQVVADAKLAMMLQNEAFQRELQSHPDLAHLGRGSRGGDSRGNAFGMGGDGPSIKEQMTSMGNDIRRKVDELAVRWKMKDPGRADQTTEYSSVPLMSSVDDDADDQAEVVHFSQNNATRRTSSGGSAAGVGVFRADSAGEEQLGE 1050
            MAEISTEDAV+QLHQMFGDYDKTALA VLEAHGGHVERTVEHLLSNPQAASGXXXXXXXXXXXXXXXASRGTDHDAALALQLSREWSDEPTNMPPPPVRPQGIPTPYGVG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGDRRGRRVALPEQFLRTPGWTGGGAGEVSSDPQV ADAKLAMMLQNEAFQRELQSHPDLA+LGRGSR GDSRGNAFGMGGDGPSIKEQMTSMGNDIRRKVDELAVRWKMKDPGRADQTTEYSSVPLMSSVDDDADDQAEVVHFSQNNATRR+SSGGSAAGVGVFRADSAGEEQL +
Sbjct:    1 MAEISTEDAVEQLHQMFGDYDKTALANVLEAHGGHVERTVEHLLSNPQAASGXXXXXXXXXXXXXXXASRGTDHDAALALQLSREWSDEPTNMPPPPVRPQGIPTPYGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGDRRGRRVALPEQFLRTPGWTGGGAGEVSSDPQVAADAKLAMMLQNEAFQRELQSHPDLAYLGRGSRSGDSRGNAFGMGGDGPSIKEQMTSMGNDIRRKVDELAVRWKMKDPGRADQTTEYSSVPLMSSVDDDADDQAEVVHFSQNNATRRSSSGGSAAGVGVFRADSAGEEQLAD 335          
BLAST of mRNA_Ecto-sp13_S_contig107.640.1 vs. uniprot
Match: A0A836CN65_9STRA (CUE domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN65_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 4.780e-13
Identity = 61/160 (38.12%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  532 RGRRVALPEQFLRTPGWTGGGAGEVSSDPQVVADAKLAMMLQNEAFQRELQSHPDLAHLGRGSRGGDSRGNAFGMGGDGPSIKEQMTSMGNDIRRKVDELAVRWKMKDPGRADQTTEYSSVPLMSSVDDDAD-DQAEVVHFSQNNATRRTSSGGSAAGVG 1008
            RG  V LP+ FLR PG             QV AD +LA MLQN  F   L +HP+ A  G G        +A      GPS+ EQ+ +MG D++R +  LA +W +K        +  +SVPLM+     AD D+AEVV F Q + T R  SGG    +G
Sbjct:   84 RGTPVNLPDNFLRVPG------SMTEESAQVQADERLAAMLQNADF---LAAHPEYASYG-GRAPAARTSHAQHAEDTGPSVTEQLQTMGADMKRNLLGLAAKWNLKPSTAPAADSGSASVPLMNRNSTAADEDEAEVVTFDQGDTTTRRGSGGHLGSLG 233          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig107.640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1U7_ECTSI1.280e-17397.31CUE domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CN65_9STRA4.780e-1338.13CUE domain-containing protein n=1 Tax=Tribonema mi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig107contigEcto-sp13_S_contig107:3480..11656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score506.1
Seed ortholog evalue1.3e-140
Seed eggNOG ortholog2880.D7G1U7
Model size1290
Hectar predicted targeting categoryother localisation
Exons8
EggNOG OGs2D10K@1,2SG93@2759
Cds size1083
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig107.640.1prot_Ecto-sp13_S_contig107.640.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig107 3642..11611 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462547.585983-UTR-Ecto-sp13_S_contig107:3479..36411681462547.585983-UTR-Ecto-sp13_S_contig107:3479..3641Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig107 3480..3641 -
1681462547.683621-UTR-Ecto-sp13_S_contig107:11611..116561681462547.683621-UTR-Ecto-sp13_S_contig107:11611..11656Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig107 11612..11656 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462547.5963745-CDS-Ecto-sp13_S_contig107:3641..38361681462547.5963745-CDS-Ecto-sp13_S_contig107:3641..3836Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig107 3642..3836 -
1681462547.6119864-CDS-Ecto-sp13_S_contig107:4971..50991681462547.6119864-CDS-Ecto-sp13_S_contig107:4971..5099Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig107 4972..5099 -
1681462547.6221793-CDS-Ecto-sp13_S_contig107:5902..59681681462547.6221793-CDS-Ecto-sp13_S_contig107:5902..5968Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig107 5903..5968 -
1681462547.6327116-CDS-Ecto-sp13_S_contig107:6320..64021681462547.6327116-CDS-Ecto-sp13_S_contig107:6320..6402Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig107 6321..6402 -
1681462547.6439202-CDS-Ecto-sp13_S_contig107:7013..72011681462547.6439202-CDS-Ecto-sp13_S_contig107:7013..7201Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig107 7014..7201 -
1681462547.6522305-CDS-Ecto-sp13_S_contig107:8863..90721681462547.6522305-CDS-Ecto-sp13_S_contig107:8863..9072Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig107 8864..9072 -
1681462547.6608825-CDS-Ecto-sp13_S_contig107:10399..105241681462547.6608825-CDS-Ecto-sp13_S_contig107:10399..10524Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig107 10400..10524 -
1681462547.669902-CDS-Ecto-sp13_S_contig107:11521..116111681462547.669902-CDS-Ecto-sp13_S_contig107:11521..11611Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig107 11522..11611 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig107.640.1

>prot_Ecto-sp13_S_contig107.640.1 ID=prot_Ecto-sp13_S_contig107.640.1|Name=mRNA_Ecto-sp13_S_contig107.640.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=361bp
MAEISTEDAVQQLHQMFGDYDKTALATVLEAHGGHVERTVEHLLSNPQAA
SGGGGGGGGGGGSGGGGASRGTDHDAALALQLSREWSDEPTNMPPPPVRP
QGIPTPYGVGGGGSGGGGGGGGGGGGAGGLFAAERGSSMAQSAAAAAASR
GGGGGSGSSGDRRGRRVALPEQFLRTPGWTGGGAGEVSSDPQVVADAKLA
MMLQNEAFQRELQSHPDLAHLGRGSRGGDSRGNAFGMGGDGPSIKEQMTS
MGNDIRRKVDELAVRWKMKDPGRADQTTEYSSVPLMSSVDDDADDQAEVV
HFSQNNATRRTSSGGSAAGVGVFRADSAGEEQLGERGQGDRHMLRHLSAE
VVRLRGRTLW*
back to top

mRNA from alignment at Ecto-sp13_S_contig107:3480..11656-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig107.640.1 ID=mRNA_Ecto-sp13_S_contig107.640.1|Name=mRNA_Ecto-sp13_S_contig107.640.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig107:3480..11656- (Ectocarpus species13 EcNAP12_S_4_19m)
GTACTTGCTACGACAAAGTTGCGCACTTGAAGACTTTGTTCAACCATGGC CGAGATTTCTACCGAAGACGCCGTGCAGCAGCTGCACCAGATGTTCGGCG ACTACGATAAGACGGCCCTTGCTACTGTTCTCGAGGTACGCGTACGCACG TTGCCTGCACGTTTCTTGAGGTACGGCCGTGTGCCCGGTGAAGGAAATAC TTGGACACAAGCAAATTTCAGACGCCTCGCGAGCTTTCATCTGAAGAGCC TTGTTACGGCCCCATCTATCGTATGATTACCTTTCGCCCAGCGAATCTCT CCGCTTGTGCCTCCTCACCTTGGTGTTTCCGTGTTCAATCCATCCAGTCA ATTCTTCAGATCCTTCGCACGCGTGCAGGTTCCCTTGCCACCTCCCGGCA ATTGGCGCTTCCATCGCGCGCTTCTGCTGTTGCCTATGGAGCTTTTGGCA CGCTACATATCATGCTTCGCTGGTGGTGTTATCAAATAAATAGCAAGAGT ACGGCGGGTGTGCCTTTATACTCTCACGTCTTGTTCGACTGCTGTGGTCT CATCCCGAATGGGTAGTCTTTTTTCTGTTTGTATTGATGTTTCCTTATAC TCCAACATGCTTTGAATCCGTGCTGCAATCTCACTGTCTGTATCCATGTC ACCTCCAGCTCGCCATGTGCTTGCTCGTTGAAGCCAGAGGAAAGCGAAAG TTGGGGTGCATAACTCTAGCACGAAATGATTGAAATGCCTCATGCCTGAT TTTCCAGCAGAGAGTTCTGGCTGCGGCGGCAAATCCAGCACTCGCAGACG TTCCCATACTACGGCCTGATATTCTAGCACGGAAGCAGTGCCCAATTGTC ATTCAGTACAATAGCGGCGCGAAGCGATACGAGGCCTCCTTCTTGACTTG AGGCGCTTCTTCTGCCTGCCAATTAATTAAGTTGGTGCTGTTAAACCCAA GAACATGCGCGACGAAAGCATTGGTCCATGTGCGCTGCTCTACAGCCCAG CAGGCGATTTCTTACGTTCTCGCTCCCCCCTCCTGCTCCGCTATGTACCT GCCGAAGCTCATGGAACCTCCTCACGCGACGTCTCACACCTTTCGTTTGT GTGTTTTCATGGCTGACCTCTTCTTCTCACAGGCACACGGTGGGCACGTG GAGCGCACGGTAGAACACCTACTCAGCAACCCGCAAGCTGCTTCAGGAGG TGGAGGTGGGGGCGGCGGCGGCGGTGGTAGTGGTGGCGGTGGGGCTTCCC GCGGCACGTAAGTGTGAACCGACGGTCTCTAGGAGTTTCTGATGCCGCTG CGCTAGGCCGACCACAGCGAGGCGTTTGAAGCAGCGCTAAACTACTCTCT GGAGGTTCCGCCGAGTTTTTTTGTGCTGTTTTGTTGTGTTCTTCCAGCTG TGGATTTACCCCGTTGTCTTTCCTGCGCGCGAACGAAAAAAGTACGCGGG AAGTGTGTTTACCTACGCTTGTCGCACGAAGCCAGGCATAAGCCGATCGC CGCACAACGTACTATGCATAGGCCACACAGCATTATCATTCATCCTTTCA ACACCGGGCTTGTGGACGGCTGCTACAAATGCACTTTGTTCGCTGCCAGT TTGCCCCTCGCGGGTCCGCTCTTTGCGCGCGTGTGTGTTTGATGTTACGA TCGACCGCGCCAACCGGCTGCTGACCAATGAAAAGACGTCAGTGCCAACG GGTAATTCGAGGTCCCTGGAAGTGGGCCAAGTGCGAATACCAACACTTTA TCTCTCTACGAATTTTTTCATGGAAACACACACCACAGCTCCACACGTGC CCTCGCCCGAACCTAGGAAGCCGCTGATGCAAAGAGCGTAGGGCAGTGAA CGGGGTATTTCAAGCCAAGACGCAGCGAGGAAATCCGTCGCATGCATCTC CCATTTCGACGCTCGTACACTCTCAAGATCCAGCAGCCATCGTGTCAACA GACAGAAAAGTCAACCAAAATTGCAACACGTGCGTCATCGTAGCATTACG CATGCCCCTGCTTAGAACAGTGAAGGTGGATAGCCCTCCCTCGAGAACGT GTGTTAGTGTGTGTCTATGTGTACATGTGTGTGTGTGTTTTTTTACTGTC ATCGTCGACCGCACGAGTCGGCTGACCAATGAAAAGACGTCAGTCTCATT GCGGTTGAAAACACAAAACACTTCAAATTGCCATTAACTGGGACCCTGTG AGAGGGCGGCATGTGTGTGGTGTGTTTGCGTGTGTGTGTTTTCACTTGTT CTTGCTGCGCTCGCGGAGACGTCGACGTATTTTGGCGTTTTCCCTGCGGC TACCCCTCATCGAACGTGACGACCACCACCATATCAAGGTTCAGAGGAGT CCATCCTACTTTTCGCCACACACCCCTACCCCTACCTTACAATGCCTAAT TACATCAATGTTCGACTGCTTTTGGCTGCCCTGTCACGGTGGCAGTGTGG TGTCCATGCCTAGCTCGTGTCTTGCTTGAGCCTTCGCGTGCCTGCCTGCC TGCCATCTTTCCTTCCTCCTTCTCACGGTCTCCTCGTGTGTGGTGTGTTG TACGCGGCACTTCCAACTCATCTTGCTGTACCAGCGACCACGACGCGGCG TTGGCGCTGCAGCTGTCCCGTGAGTGGTCGGACGAGCCGACCAACATGCC CCCGCCGCCGGTGAGGCCGCAAGGGATACCGACACCGTATGGCGTGGGCG GCGGTGGCAGCGGCGGTGGCGGTGGCGGCGGTGGCGGTGGCGGAGGAGCC GGGGGCCTTTTCGCGGCCGAACGGGGCTCGAGCATGGCGCAATGTATGTT CGCTTTCGTGGTGCATTTTAGGCCGATGCTACAACAAATGTCCGTTTTCG TTAGTTGACCTGGTATCTTGGCTTGGCGTCTCAACTCGTCAAGAACTTAT GATTGAGTTCGTGAGTACTCTTCTGGATGGACTCTGCAGTTCGATGTGAT CTTTACTGTGTGTATGTTTTGTGCATGTTTTTTTGTTCCCCAAAGTATGT TTGATGCTGGTGTGGACACAAAAAATGCCATCGAGGGTTGACGCCTTTGG GCGCTGCGACAGGCATCGTCTTCCTTTCTCTTGTTCTTTTAAGCCATGTC ATCTATTGCCCCACGGTCTGACCCGGCCGGAGAGAATCCGATCCGGGATA GGCCACTCAATAGACTCTGGCGTTGATTGTTGCACCGTCGCGGCAGGCGC GAGTACATCCCGTACGGCCCCCCTTCTTTCACACACGCGGACCCTCGTGC TTCCTTCCACAAGCGCGGCAAGTACGCGGGTCCACGTTCGTGGAAGGGGG GCCGTACGGGATATACTCGACGCCCGACGCGATGGTGCAAGAACGAACGC AAGCGTCTTGTGAGTGGCCGATCCCAGATCGGATTTTTGTCAGAAATTTC GCAAGGACGCCGAATTTTCTGTGCGTGCGTGGTAAGGAGGTTAAGCCATG CCATCTATTGCCCCACGGTCTGACCCGGCCGGAGAGAATCCGATCCGGGA TAGGACTCTGGCGTTGATTGTTGCACCGTCGCGGCAGGCGTCGAGTACAT CCCGTACGGCCCCTCTTCTTTCACACACGCGGACCCTCGTGCTTCCTTCC ACAAGCGCGGCAAGTACACGGGTCCACGTTTGTAGACGGGGGGCCGTACG GGATGTACTCGACGCCCGACGCGATGGTGCAAGAACGAACGCAAGCGCCT TTTGAGTGGCCGATCCCAGATCGGAATTTCTGCGGGAAGCACTTTGTAGG GTCCGCGTATGTGGAAGGGGGGCTGTACGGGATGTGCAGTCGACGTCCGA CGTAACGGTGAAAGAGCGACCACATGTGACGTAAGGTTGTACACCCGCTG GACCGATATCCAAACCTCGATTGCTCGACATCTAAGAAGTGGTAATGCCA ATGATGGTGGCGTTGGTACCTCCTGATCGAGAGGACCCCGAAAACATATC GTTTAATTGTGGTACCCATCGTGCTTCGTAGATTGAATACAGGGGGTGTG ATATGTTATGTCACCTAAATACTAGCTGTTGGCAGCAGCAGCAACAGCAG CTCCTTCCCTGACCCCGTGCCTTGTGACTTTATAGCCGTGTCGACAGTTA CCGTTGCACGTGAGAGTGGTCGCAGCTTCGTGGCTGCACTGCCAATGCTT GGGTCGGTTGTCGTCCGTGAGCGCTCTTATGTCTGGCACGGGATCGATAG TACAGGCAGCACCTGCATAACGAAACCTGCAGAACGAAACCGCGAAGTGG CATGACAACGGCGACAGCGATGGTAGTGGTGGCGTGCGCACTCCCACGCG GCCACCTCTTGACCGTATGCGTTTGGCATCGCGAAGAACGGAAGGAAACA AAAGACGATGCGCATCAGCAGACGGTGCTTTTTCCCACCATGCCCACCCG ACATGTCTTGCGCTTGACCGATCACAAACCCCGACTCTCTTGGTCGCAAT GGCAGCCGCAGCAGCGGCGGCCGCATCACGAGGCGGCGGCGGAGGCAGTG GAAGTAGCGGCGATCGAAGAGGCCGACGTGTCGCGCTGCCAGAGCAGTTT CTGCGGACGCCCGGCTGGACGGGCGGGGGCGCGGGCGAAGTGTCGAGCGA TCCGCAGGTGGTAGCGGACGCTAAGCTTGCCATGATGTTGCAGGTGGGTT GAGAGTGTTCCGGGTGTGTCTGCTGATTGTGCACCGGGCGTTGCGCCATT TGCGTTTTTTTGTTGGTTCGCGCGTTTCTTGTCCCTTGTTTGTCCGGTGC ACGCCCGCGAACAAGCTTGTGCTACCTACCACCGATGCCCTCCGCTACGT TTGTTGTTGCTGTTGCTGTTGTTGTTGTTGTGGCTGTTGCTGATATTGAA ATTGTGTTGCGCTTGCTTGTATTTCTAGGTGCTTTTACTCCTCTCTTCGA TTTCCCCTCGAGACAATGTCCGAAGCGGAACTGCTGTTGCATGGGTTTAT TCTTTTTTGCGTGCTTTTTGTGTTCAGCTTATTCACCACACTTGCCGTCT AAATTCCGCTGAAGATTCGCCTCGAACATTCGCCCGTTGCGATTCGTACG ACTTGAAACCCACCTTTGTTCCCTATTAAACCCGCGAAACTCATACTGAT TTTCCGTTCTTTTTCCCTCTCCCTTGCCTCCGATCGCAGCGCAACTTGTC CCGGAAAAGCTCTCGAGTTGTTTTTACGCCATCCGTGCGCTTGCCCTCTT TCTTTATGGCATGACCCCCCAACCCCGCGCGTGCCGGTGTTGCGTTTCTG GCAGAATGAAGCATTTCAGCGCGAGCTCCAATCGCACCCAGACTTGGCCC ACCTGGGGAGGGGTTCACGGGGTGGCGATAGCCGAGGTACGCAGATCGGC GAGCATGGGTGCCGCAGAAATGTGGTGTACGAGTGGGTGAACGCGCTACG GCGAATACTCGCATCATTAGGGGGTACATGGTGTAGCGGCGACACCCGAC GTCAAGCAAACAGGCAGGGGTGGAGTGCCGCAGAATGGCGGCGTGGTGGA AAGCATCGGTGAACGAAAAACGGCGGAACCAATCCACACCATGGCGGGGA TTTTCAGCGTTTGCTGTCACTTGGTCGCCAACTCCGCACCAGGCCGTTTT GGCCGCGCGGAATCTGAACACGGGCACGAGGCAGTTCGTCTGTTTGCTCA TCTATCTCTTCCCCCTTGTCTCTCTCTCTTGTTTAAAGGGAACGCGTTCG GCATGGGCGGCGACGGTCCGAGCATTAAGGAGCAGATGACCTCCATGGGA AACGGTAAGAAGGCGTTGCAGTACCTGTACATGCGAGAGTCGTCGGCTAG CTGGCCCTGTGACGTTTAGATTTTTTTTTATGGCACGGGACGATGACATA GGCCTGCGTGGGTACCGTGTACGACACGAGATAACATACCCCCTGGACCG ATTTTCGGCGCTCGATTACTCGGCGACGAAAATGATTCATCACCGAAACG ATACGTTTTCGGAGAGCTCTCGACCAGACGGCTTCAACGCCGCCGTTTTC GGCGCTGAACTCTTTTTGCCGTTGAGAACTCGAGCTTTGACAGTCGGTCC AGGAGTGTTTCATCTTGTGTCGTATACGATAGGCTTGTTAAGGTGGGGCA CGCGAGGCCGGCAGTAGACCAGTAGGTAGGGAAAGAACTGATAAGGGGAG TGCGCCACCCGCATGAATCTGATGCTTTATTTTGCCGAAAGCGCTCTGAA TAACACATTTCGCTTGGGGCAGGCATCATCCGACGACTGGAAAGCTTGTA CTTGATTCCACCGGAAGTAATGATGAGGGGATGCACTCTGCTTTCGCGAA TTCGTTCAGTTGTTGGACGGGGAACGCCGGCCGATGCGTGGAGATGATGA TGGGTGTGTGCCGAAGAGGCTCACATGAAGAGCAGCGAATACGCGGGAAG TGCTTTTTCGTTCTTTTTCACGTTAGACTGGACTGTTGATTGACGGCGGT CGGGTAGAAGGGGTCGACTTCGTGGTCAGGTTTTCTGGTTCTGGACACCG ATTTGCTTGAGCCGCCACCAACGAACACATGTGTGCGGTGAAAATGGTTC CGCACAGACATTCGTCGCAAGGTGGACGAGTTGGCCGTGCGGTGGAAGAT GAAGGACCCTGGGCGGGCAGACCAGACTACGGAGTATAGCTCGGTGCCGC TGATGAGCTCGGTCGATGACGATGCAGATGACCAGGTGCGGCGTGACTCA TTTCGTTTCGTGAACTTTGGGTCTTCATGTCCACGTGCGTCCAATCGCCC GCCTGGTCGGTGAAAGCTCTACTTTTGCGTGCCCGGACTGCTGTGTGTTC GCGTGTGCACGTTTCTTCTTGTGGTTCATACATACGGAAGATCCCTGACT TGTGATGTTCAGCGGGGGAAGCTGATCTAAGGTCTGAGTAGAGATGACGG CCGTGCCTGATTCTAAACACGCACATGCTTGGGCCAGTGCCGCACTCCAG GGGATGCCCCTGGACTGGTTATGGGTGCAGGTCAAGAGGGGGGAAAAGTA TGGCATTTGCAGGTCAGAACCGCTTTCGGATCGGCGTCAAGACGAAGCGG TCTTACGCACGGAGACATCGAAGTTGTTTTCTTTCTCAGGTCATGCTGAA GCAAGTTGCCCAACCTTTATCCCCTTTGAGAGGCCCAGAAGTTCAATGTT CTTTCGAAATTTCTGAAAAGTACGAAAACGAGAGAACGACGCCTGCTGAT TGGATGACGCAGGCAGTTCTATCCCTTAGTGCTATTGCAAAGCGAACTTC CGGTCCAGGCCGCCTTTGTCTAAAAATCCTCTCAAGTGTCCGCTCGAAGT CGAGGGGACATTTGATAAAGGCTGTAGACAACAGCAGGAGAGAGGTGTGT TCTAAACGGGGCACGAAAAGGAGGCTTTCAAGAAGTTCGTCTGTAAGGGA AAGCGAGACTTTCTAACCCAAGCCCTTGGTTGCCCGGTGCCTCCTATCAT CGGTGGGCTAGGTACTTCTTCCACGCTTGCCCCTAGTCGCGCTTTCCACC CAAGGGTAGACTGACGAGATGCAACTTCGCTGTTGAACCCGCGGTATTGT CCCGCGCGCCTCGGCCTGACATGTACCCTCTCTACTCCTCCACTCTACAA AGCATCCGGACTGGACTATAGTTGTCCCGCGTACCCAGCACCCCCCCCTT GTCGAGTAGTGCAAACGTGGAGATAACTGTGGTATTCTTCGCGAGGTAAC GCAGGCGAAGAAGATGGGGACAAAAAGTGTTCCCGGAAGCCGGTCTACCT CTAAAGGGGTTAACCGTTGCCATGGCATTCTCGTCGCGGCGTTTTTATTT TTTTCTCTCTTGTTTTCTAGGCTGAAGTCGTTCACTTCTCCCAGAACAAC GCCACCCGCCGCACTTCCTCGGGCGGCAGCGCCGCAGGCGTGGGGGTGTT TCGCGCCGATTCCGCAGGGGAGGAGCAGCTAGGTGAGAGAGGACAGGGAG ACAGGCACATGCTTCGACATTTATCAGCAGAAGTTGTGCGGTTGAGGGGG CGTACACTTTGGTGAACACTGGGGTTCATGACTTGCCGCGCGCATTATCG ACAAGAGCGAAACACGGGGTCGGATATCAGGTGGCATGTTTGAAGATAAT ATGTGGGTAGGGGCCCTACAGCGCATGCAGAGGAGTTGCATCTGCTGCTG GGCGAAGGCCCACAGGCGGTGCCCAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig107:3480..11656-

>mRNA_Ecto-sp13_S_contig107.640.1 ID=mRNA_Ecto-sp13_S_contig107.640.1|Name=mRNA_Ecto-sp13_S_contig107.640.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1083bp|location=Sequence derived from alignment at Ecto-sp13_S_contig107:3480..11656- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGAGATTTCTACCGAAGACGCCGTGCAGCAGCTGCACCAGATGTT
CGGCGACTACGATAAGACGGCCCTTGCTACTGTTCTCGAGGCACACGGTG
GGCACGTGGAGCGCACGGTAGAACACCTACTCAGCAACCCGCAAGCTGCT
TCAGGAGGTGGAGGTGGGGGCGGCGGCGGCGGTGGTAGTGGTGGCGGTGG
GGCTTCCCGCGGCACCGACCACGACGCGGCGTTGGCGCTGCAGCTGTCCC
GTGAGTGGTCGGACGAGCCGACCAACATGCCCCCGCCGCCGGTGAGGCCG
CAAGGGATACCGACACCGTATGGCGTGGGCGGCGGTGGCAGCGGCGGTGG
CGGTGGCGGCGGTGGCGGTGGCGGAGGAGCCGGGGGCCTTTTCGCGGCCG
AACGGGGCTCGAGCATGGCGCAATCCGCAGCAGCGGCGGCCGCATCACGA
GGCGGCGGCGGAGGCAGTGGAAGTAGCGGCGATCGAAGAGGCCGACGTGT
CGCGCTGCCAGAGCAGTTTCTGCGGACGCCCGGCTGGACGGGCGGGGGCG
CGGGCGAAGTGTCGAGCGATCCGCAGGTGGTAGCGGACGCTAAGCTTGCC
ATGATGTTGCAGAATGAAGCATTTCAGCGCGAGCTCCAATCGCACCCAGA
CTTGGCCCACCTGGGGAGGGGTTCACGGGGTGGCGATAGCCGAGGGAACG
CGTTCGGCATGGGCGGCGACGGTCCGAGCATTAAGGAGCAGATGACCTCC
ATGGGAAACGACATTCGTCGCAAGGTGGACGAGTTGGCCGTGCGGTGGAA
GATGAAGGACCCTGGGCGGGCAGACCAGACTACGGAGTATAGCTCGGTGC
CGCTGATGAGCTCGGTCGATGACGATGCAGATGACCAGGCTGAAGTCGTT
CACTTCTCCCAGAACAACGCCACCCGCCGCACTTCCTCGGGCGGCAGCGC
CGCAGGCGTGGGGGTGTTTCGCGCCGATTCCGCAGGGGAGGAGCAGCTAG
GTGAGAGAGGACAGGGAGACAGGCACATGCTTCGACATTTATCAGCAGAA
GTTGTGCGGTTGAGGGGGCGTACACTTTGGTGA
back to top