mRNA_Ecto-sp13_S_contig10685.629.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10685.629.1 vs. uniprot
Match: D7G8L2_ECTSI (Ubiquitin-activating enzyme E1 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8L2_ECTSI) HSP 1 Score: 1060 bits (2741), Expect = 0.000e+0 Identity = 521/594 (87.71%), Postives = 538/594 (90.57%), Query Frame = 1
Query: 1 GGDNALTTKEHRPAPGEEPASQWFLVDELDTGVSGRDPGRTVEWMGCAKAIATDPLPLQAWLGADLSNKFASARIAVIGCGRLGRDVARCLLHTGACTNPRGRMVFIDHGDDSSIYECSSPGTAPWHTECDVIQGRAAALCEVVSGHIGPGGSRVSAFDGAVQDTDTEIDLWEGVDAVVICAGRGIGGERRGGRGGCTTDGAGGRVGDCEALVRFVSHKCVLHSKPLVWGWAGSGGEGGAGVEVMAPCRTSCLICTSHGGVKEMIERRTSSSVEAVPSRDGRARRAFCLTPENCCRDESGGEVWDPKDRCFGVARSAVAGVMVAELAKVLKPRCRRDELRNWTLKADSSCHCGNGGSPSKRWRSGGHDVKTKEGDKPPPAPESVSALVGQQAGKGGSTRIRPVVTSPDPPLMVLSTSFDPFSGDSLRAIPEGFTEWGVEEIRPSMEMILTPRAPNTDVGNPFSLRTLISLVFARFGVDAKSVAAAAPGSECRVGSGGCQELEGAFGGNILWAEWEKDEGNDSRQDGRRTGGVVCKMDHHVLSLWQKRVLSSSTHGEAERRTSCEGKEPRFLFLDVRGVIGEENAVLPVLKYWVR 1782
GG+NA TTKEH PAPGEEPASQW LVDELD+G+SGRD GRTVEWMGCAK DPLPLQAWLG DLSNKFASARIAVIGCGRLGRDVARCLLHTGACTNPRGRMVFIDH DD SIY SSPGT P+H ECDVIQGRAA L E+VSGHIGPGGSR+SAF GAVQDTDTEIDLWEG+DAVV+CAGRGI GE R GRGG T DGAGG GDCEALVRFVSHKC LHSKPLVWGWAGSGGEGGAGVEVMAPCRTSCLIC+SHGGVKEM ERRTSSSVEAVPSRD RARRA C TP NCCRDE GGE WDPKDRCFGVARSAVAGVMVAELAKVLKPRCRRDELRNWTLKADSSCHCGN SPSK WRS HD KTKEGDKP PESVS L+ Q AGKGGST IRPVVTSPDPPLMVLSTSFDPFSGDSLRAIPEGFTEWGVEEIRPS+E+I PR PN DVGNPFSLRTLISLVFARFGV AKSVAAAAPGSECRVGSGGCQEL GAFGGNILWAEWE+ EGN+SRQDGRRTGGVVCKMD +VLSLWQ+RVLSSSTHGE RRTSCEGKEPRFLFLDVRGV+GEENAVLPVLKYWVR
Sbjct: 157 GGNNARTTKEHPPAPGEEPASQWLLVDELDSGLSGRDQGRTVEWMGCAK----DPLPLQAWLGTDLSNKFASARIAVIGCGRLGRDVARCLLHTGACTNPRGRMVFIDHEDDYSIYASSSPGTTPFHAECDVIQGRAAVLRELVSGHIGPGGSRMSAFGGAVQDTDTEIDLWEGIDAVVVCAGRGIAGEGRRGRGGGTADGAGGMAGDCEALVRFVSHKCTLHSKPLVWGWAGSGGEGGAGVEVMAPCRTSCLICSSHGGVKEMTERRTSSSVEAVPSRDRRARRASCSTPGNCCRDEIGGEAWDPKDRCFGVARSAVAGVMVAELAKVLKPRCRRDELRNWTLKADSSCHCGNEDSPSKSWRSESHDDKTKEGDKPRLTPESVSGLLSQPAGKGGSTHIRPVVTSPDPPLMVLSTSFDPFSGDSLRAIPEGFTEWGVEEIRPSVEIISAPRLPNVDVGNPFSLRTLISLVFARFGVVAKSVAAAAPGSECRVGSGGCQELGGAFGGNILWAEWERAEGNNSRQDGRRTGGVVCKMDQNVLSLWQQRVLSSSTHGEPGRRTSCEGKEPRFLFLDVRGVMGEENAVLPVLKYWVR 746
BLAST of mRNA_Ecto-sp13_S_contig10685.629.1 vs. uniprot
Match: A0A6H5KDR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDR0_9PHAE) HSP 1 Score: 946 bits (2444), Expect = 0.000e+0 Identity = 483/628 (76.91%), Postives = 503/628 (80.10%), Query Frame = 1
Query: 1 GGDNALTTKEHRPAPGEEPASQWFLVDELDTGVSGRDPGRTVEWMGCAKAIA----------------------------------TDPLPLQAWLGADLSNKFASARIAVIGCGRLGRDVARCLLHTGACTNPRGRMVFIDHGDDSSIYECSSPGTAPWHTECDVIQGRAAALCEVVSGHIGPGGSRVSAFDGAVQDTDTEIDLWEGVDAVVICAGRGIGGERRGGRGGCTTDGAGGRVGDCEALVRFVSHKCVLHSKPLVWGWAGSGGEGGAGVEVMAPCRTSCLICTSHGGVKEMIERRTSSSVEAVPSRDGRARRAFCLTPENCCRDESGGEVWDPKDRCFGVARSAVAGVMVAELAKVLKPRCRRDELRNWTLKADSSCHCGNGGSPSKRWRSGGHDVKTKEGDKPPPAPESVSALVGQQAGKGGSTRIRPVVTSPDPPLMVLSTSFDPFSGDSLRAIPEGFTEWGVEEIRPSMEMILTPRAPNTDVGNPFSLRTLISLVFARFGVDAKSVAAAAPGSECRVGSGGCQELEGAFGGNILWAEWEKDEGNDSRQDGRRTGGVVCKMDHHVLSLWQKRVLSSSTHGEAERRTSCEGKEPRFLFLDVRGVIGEENAVLPVLKYWVR 1782
GGDNALTTKEHRPAPG EPASQW+LVDELD+G+SGRDPGRTVEWM CAK + TDPLP+QAWLG DL+NKFASARIAVIGCGRLGRDVARCLLHTGACTNPRGRMVFIDHGDDSSIY SSPGTAP+H ECDVIQGRAAALCE+VSG I PGGSR+SA DGAVQDTDTEIDLWEGVDAVVICAGRG G E R GR G GVEVMAPCRTSCLIC+SHGGVK+MIERRTSSSVEA+PSRDGRARRA C TP NCCRDES GE W PKDRCFGVARSAVAGVMVAELAKVLKPRCRRDELRNWTLKADSSCHCGNGG PSK WRSG HD KTKEG+K PAPESVSA V QQAG GST +R VVTSPDPPLMVLSTSFDPFSG+SLRAIPEGFTEWGVEEIRPS+E+I TPR PN DVGNPFSLRTLISLVFARFGVDAKSVAAAAPGSECRVGSGGCQ+L GA GG ILWAEWEK GNDSRQDGRRTGGVVCKMDH+VLSLWQ+RVLSSSTHGEA RRT CE K PRFLFLDVRGVIG ENAVLPVLKYWVR
Sbjct: 78 GGDNALTTKEHRPAPGVEPASQWYLVDELDSGLSGRDPGRTVEWMACAKGESELANGVGGRTAVKVVQCGFSSPRTLAWETTSNGSTDPLPVQAWLGTDLNNKFASARIAVIGCGRLGRDVARCLLHTGACTNPRGRMVFIDHGDDSSIYTSSSPGTAPFHAECDVIQGRAAALCELVSGRIDPGGSRMSAVDGAVQDTDTEIDLWEGVDAVVICAGRGSGREERRGR--------------------------------------------GEGVEVMAPCRTSCLICSSHGGVKDMIERRTSSSVEAMPSRDGRARRAPCSTPGNCCRDESRGEAWAPKDRCFGVARSAVAGVMVAELAKVLKPRCRRDELRNWTLKADSSCHCGNGGIPSKSWRSGAHDDKTKEGEKLRPAPESVSASVDQQAGTAGSTHVRSVVTSPDPPLMVLSTSFDPFSGNSLRAIPEGFTEWGVEEIRPSIEIISTPRLPNVDVGNPFSLRTLISLVFARFGVDAKSVAAAAPGSECRVGSGGCQDLGGASGGKILWAEWEKAGGNDSRQDGRRTGGVVCKMDHNVLSLWQQRVLSSSTHGEAGRRTPCERKVPRFLFLDVRGVIGGENAVLPVLKYWVR 661 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10685.629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10685.629.1 >prot_Ecto-sp13_S_contig10685.629.1 ID=prot_Ecto-sp13_S_contig10685.629.1|Name=mRNA_Ecto-sp13_S_contig10685.629.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=551bp MGCAKAIATDPLPLQAWLGADLSNKFASARIAVIGCGRLGRDVARCLLHTback to top mRNA from alignment at Ecto-sp13_S_contig10685:2531..5732- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10685.629.1 ID=mRNA_Ecto-sp13_S_contig10685.629.1|Name=mRNA_Ecto-sp13_S_contig10685.629.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3202bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10685:2531..5732- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10685:2531..5732- >mRNA_Ecto-sp13_S_contig10685.629.1 ID=mRNA_Ecto-sp13_S_contig10685.629.1|Name=mRNA_Ecto-sp13_S_contig10685.629.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1653bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10685:2531..5732- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |