mRNA_Ecto-sp13_S_contig1068.623.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1068.623.1
Unique NamemRNA_Ecto-sp13_S_contig1068.623.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1068.623.1 vs. uniprot
Match: D7G6N7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6N7_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 1.140e-89
Identity = 140/145 (96.55%), Postives = 142/145 (97.93%), Query Frame = 1 
Query:    1 MRFASFPKATALLLAATLISAPMAEAGHAGEAGMEKAKEASSRGLAEEGVTEEVIVGERPRSHPHEKEKKQRKPRMATMGVQQTWKECVGMDVEEAVEIIKAARPDLRKIAKVPEGAMVTMDMRTDRVRIYYDKENIVTRPPRVG 435
            MRFASFPKATALLLAATL SAPMAEAGHAGEAGMEKAKEASSRGLAEEGVTEEV+VGE PRSHPHEKEKKQRKPRMATMGVQQTWKECVGMDVEEAVE+IKAARPDLRKI KVPEGAMVTMDMRTDRVRIYYDKENIVTRPPRVG
Sbjct:    1 MRFASFPKATALLLAATLPSAPMAEAGHAGEAGMEKAKEASSRGLAEEGVTEEVMVGELPRSHPHEKEKKQRKPRMATMGVQQTWKECVGMDVEEAVEMIKAARPDLRKITKVPEGAMVTMDMRTDRVRIYYDKENIVTRPPRVG 145
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BLAST of mRNA_Ecto-sp13_S_contig1068.623.1 vs. uniprot
Match: A0A836CAH7_9STRA (Putative inhibitor of trypsin and hageman factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAH7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.640e-12
Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:  253 WKECVGMDVEEAVEIIKAARPDLRKIAKVPEGAMVTMDMRTDRVRIYYDKENIVTRPPRVG 435
            W ECVGM  E+A ++IK ARPD + ++ + + AMVTMD   +RVR++ DK+ IVTR P VG
Sbjct:   13 WPECVGMKGEDAAQLIKEARPDWQ-VSVLSQDAMVTMDFGFERVRVFVDKDGIVTRAPHVG 72
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BLAST of mRNA_Ecto-sp13_S_contig1068.623.1 vs. uniprot
Match: A0BEL5_PARTE (Uncharacterized protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0BEL5_PARTE)

HSP 1 Score: 63.5 bits (153), Expect = 1.000e-10
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:  247 QTWKECVGMDVEEAVEIIKAARPDLRKIAKVPEGAMVTMDMRTDRVRIYYDKENIVTRPPRVG 435
            Q+W ECVG   EEA +II A   +L  +  +PE +MVTMD RTDRVR+++D+  +V + P + 
Sbjct:   10 QSWPECVGKTAEEAKQIILADNAELH-VQLLPENSMVTMDYRTDRVRVFHDENGVVKQAPHIA 71
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BLAST of mRNA_Ecto-sp13_S_contig1068.623.1 vs. uniprot
Match: A0A817BAS0_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817BAS0_9BILA)

HSP 1 Score: 60.5 bits (145), Expect = 2.450e-9
Identity = 28/62 (45.16%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:  250 TWKECVGMDVEEAVEIIKAARPDLRKIAKVPEGAMVTMDMRTDRVRIYYDKENIVTRPPRVG 435
            +W   VG  V+EAVE IK   P+L  + K+ E + VT+D+R DRVR+++DK+  V++PP  G
Sbjct:   29 SWPNLVGKPVDEAVEEIKRDNPNLH-VQKLEENSPVTLDLRYDRVRVFFDKDGKVSQPPNTG 89
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BLAST of mRNA_Ecto-sp13_S_contig1068.623.1 vs. uniprot
Match: A0EEX1_PARTE (Uncharacterized protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0EEX1_PARTE)

HSP 1 Score: 64.3 bits (155), Expect = 2.830e-9
Identity = 29/62 (46.77%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:  250 TWKECVGMDVEEAVEIIKAARPDLRKIAKVPEGAMVTMDMRTDRVRIYYDKENIVTRPPRVG 435
            +W ECVG  +++A++IIK   P+L+ I  +PEG++VTMD R DRVRI+++ + IV + P +G
Sbjct:  317 SWPECVGKTIQQAIQIIKKDGPNLQ-IQVLPEGSIVTMDYRRDRVRIFHNPKGIVIQIPSIG 377
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BLAST of mRNA_Ecto-sp13_S_contig1068.623.1 vs. uniprot
Match: A0A1Z5JN97_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JN97_FISSO)

HSP 1 Score: 60.5 bits (145), Expect = 4.540e-9
Identity = 30/68 (44.12%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:  232 TMGVQQTWKECVGMDVEEAVEIIKAARPDLRKIAKVPEGAMVTMDMRTDRVRIYYDKENIVTRPPRVG 435
            TM  Q  W  CVGM+ E  + +I+AA PD++ +  V E A +TMD RTDRVRI  + +  V   P  G
Sbjct:   48 TMNAQGPWPACVGMEGEACLALIQAAAPDVQDLQIVSEDAFMTMDYRTDRVRIMVNAQGFVAHIPSRG 115
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BLAST of mRNA_Ecto-sp13_S_contig1068.623.1 vs. uniprot
Match: W9RI77_9ROSA (Glu S.griseus protease inhibitor n=1 Tax=Morus notabilis TaxID=981085 RepID=W9RI77_9ROSA)

HSP 1 Score: 59.3 bits (142), Expect = 4.870e-9
Identity = 26/62 (41.94%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:  250 TWKECVGMDVEEAVEIIKAARPDLRKIAKVPEGAMVTMDMRTDRVRIYYDKENIVTRPPRVG 435
            +W E VGM+ + A + IK+  P +  +  VPEG+ VTM++R+DR R++ ++  IVTR P +G
Sbjct:   14 SWPELVGMNSDVAEKKIKSENPSVTSVNIVPEGSFVTMEIRSDRARVWVNENGIVTRVPIIG 75
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BLAST of mRNA_Ecto-sp13_S_contig1068.623.1 vs. uniprot
Match: A0A815WLF2_9BILA (Hypothetical protein n=2 Tax=Rotaria sordida TaxID=392033 RepID=A0A815WLF2_9BILA)

HSP 1 Score: 58.9 bits (141), Expect = 5.500e-9
Identity = 31/67 (46.27%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:  235 MGVQQTWKECVGMDVEEAVEIIKAARPDLRKIAKVPEGAMVTMDMRTDRVRIYYDKENIVTRPPRVG 435
            M   Q+W   VGM V EAV  IK+  P L  I  V E + VTMD+R DRVR+++D  N V+  P +G
Sbjct:    1 MSHNQSWPNLVGMPVNEAVAAIKSENPSLNVIP-VAEHSPVTMDLRMDRVRVFFDANNQVSSAPSIG 66
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BLAST of mRNA_Ecto-sp13_S_contig1068.623.1 vs. uniprot
Match: UPI00142558B8 (subtilisin inhibitor CLSI-I-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142558B8)

HSP 1 Score: 59.3 bits (142), Expect = 7.730e-9
Identity = 31/61 (50.82%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:  253 WKECVGMDVEEAVEIIKAARPDLRKIAKVPEGAMVTMDMRTDRVRIYYDKENIVTRPPRVG 435
            W + VG   + A   I    P L  +  VP G MVT D RTDRVRIY DK NIVT+PP++G
Sbjct:   35 WPDLVGETGDNAKGQILGDNPSL-DVTIVPYGHMVTTDYRTDRVRIYVDKNNIVTKPPKIG 94
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BLAST of mRNA_Ecto-sp13_S_contig1068.623.1 vs. uniprot
Match: A0A2Z6MXH2_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6MXH2_TRISU)

HSP 1 Score: 58.5 bits (140), Expect = 8.350e-9
Identity = 28/70 (40.00%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:  226 MATMGVQQTWKECVGMDVEEAVEIIKAARPDLRKIAKVPEGAMVTMDMRTDRVRIYYDKENIVTRPPRVG 435
            M++   +++W E VG++ + AV+II++    +   + VPE + VT D R DRVR++ DK++IVTR P +G
Sbjct:    1 MSSCKGKKSWPELVGINGDAAVQIIRSENSSV-SASTVPEDSFVTTDFRCDRVRVFVDKQDIVTRVPNIG 69
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1068.623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6N7_ECTSI1.140e-8996.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAH7_9STRA1.640e-1252.46Putative inhibitor of trypsin and hageman factor n... [more]
A0BEL5_PARTE1.000e-1046.03Uncharacterized protein n=1 Tax=Paramecium tetraur... [more]
A0A817BAS0_9BILA2.450e-945.16Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 ... [more]
A0EEX1_PARTE2.830e-946.77Uncharacterized protein n=1 Tax=Paramecium tetraur... [more]
A0A1Z5JN97_FISSO4.540e-944.12Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
W9RI77_9ROSA4.870e-941.94Glu S.griseus protease inhibitor n=1 Tax=Morus not... [more]
A0A815WLF2_9BILA5.500e-946.27Hypothetical protein n=2 Tax=Rotaria sordida TaxID... [more]
UPI00142558B87.730e-950.82subtilisin inhibitor CLSI-I-like n=1 Tax=Anneissia... [more]
A0A2Z6MXH2_TRISU8.350e-940.00Uncharacterized protein n=1 Tax=Trifolium subterra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1068contigEcto-sp13_S_contig1068:761..3286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score63.5
Seed ortholog evalue9.1e-08
Seed eggNOG ortholog5888.CAK93862
Preferred namedhs-24
Model size438
KEGG rclassRC00649
KEGG koko:K11153,ko:K11161
KEGG ReactionR08379,R08383
KEGG Pathwayko00830,ko01100,map00830,map01100
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0016491,GO:0055114
Exons4
EggNOG free text desc.Enoyl-(Acyl carrier protein) reductase
EggNOG OGs3ZBTU@5878,COG1028@1,KOG1208@2759
Ec32 ortholog descriptionputative serine protease inhibitor
Ec32 orthologEc-26_000240.1
EC1.1.1.300
Cds size438
COG Functional cat.Q
Best tax levelCiliophora
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462546.2902367-CDS-Ecto-sp13_S_contig1068:760..8211681462546.2902367-CDS-Ecto-sp13_S_contig1068:760..821Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1068 761..821 +
1681462546.3023357-CDS-Ecto-sp13_S_contig1068:1492..16991681462546.3023357-CDS-Ecto-sp13_S_contig1068:1492..1699Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1068 1493..1699 +
1681462546.3127153-CDS-Ecto-sp13_S_contig1068:2536..26131681462546.3127153-CDS-Ecto-sp13_S_contig1068:2536..2613Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1068 2537..2613 +
1681462546.3270524-CDS-Ecto-sp13_S_contig1068:3193..32861681462546.3270524-CDS-Ecto-sp13_S_contig1068:3193..3286Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1068 3194..3286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1068.623.1prot_Ecto-sp13_S_contig1068.623.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1068 761..3286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1068.623.1

>prot_Ecto-sp13_S_contig1068.623.1 ID=prot_Ecto-sp13_S_contig1068.623.1|Name=mRNA_Ecto-sp13_S_contig1068.623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=146bp
MRFASFPKATALLLAATLISAPMAEAGHAGEAGMEKAKEASSRGLAEEGV
TEEVIVGERPRSHPHEKEKKQRKPRMATMGVQQTWKECVGMDVEEAVEII
KAARPDLRKIAKVPEGAMVTMDMRTDRVRIYYDKENIVTRPPRVG*
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mRNA from alignment at Ecto-sp13_S_contig1068:761..3286+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1068.623.1 ID=mRNA_Ecto-sp13_S_contig1068.623.1|Name=mRNA_Ecto-sp13_S_contig1068.623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2526bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1068:761..3286+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTTTCGCGTCTTTCCCGAAAGCCACCGCTCTTCTCCTAGCAGCAAC
GCTAATTTCCGGTGAGGTTTTCGTCCGTTCGTCAGAGCTGATTGCATTGC
GTACCTACAAGTAGAGGGCAGCGAAGATGTGTGCACTTTGCACCAAGCGG
CAGAGCGGCCGCTTTTCTCTCTTCGTAGCATACAAGAGGAGCGTTGCCTT
GTTTGGGGCTAAATAATTACACGCACAGAAAGACTACTGCTGTACCCATT
CGAGATTGGTAAAACATAGCACGACACAGAGTAGCAGTTTGTACAGGAGT
AGCTATGCGTACGTGCCGTTAGAGCAGCGTCATGGATACCGACAACCGAC
AAGTTCCGAACACAACCAGGCCTTCGCGGGAAATTAAGTTGTTCAGGAAA
GGAGGGGGTACGCAGACCCTTTTCCCTAACCCTACCCCTAACCCAACTTC
CCCGACTGTAATATTGATCCAACATGTGTTCTGAATACAAAATCCCTGCG
AAGGCTACTGGCTGAGGGTGGGGATGTGAAGATGTCTAGGGTATGAGTGA
TATTGGTGGTTGTGTAGGGGGTTTTGGCCGGGCATGCAAGCGGTGCCCAA
GTTGTTACATTGAGATGTTTTGTTGAGCATGGAGTTTCCAACTATGCATT
CATATGTACACAGTTCGTCAAGTGTATTAACGGTATACTTTTGTTTGTAT
TGCTTGTTCGCATGTATTGCATCTGGCGGCAGCACCGATGGCGGAGGCAG
GCCACGCGGGCGAGGCCGGGATGGAAAAGGCAAAGGAGGCCAGCAGCAGA
GGACTTGCCGAGGAGGGAGTGACGGAGGAGGTCATAGTGGGCGAACGGCC
TAGGTCACACCCACACGAGAAGGAAAAGAAGCAGCGCAAGCCGCGGATGG
CGACGATGGGAGTGCAGCAGACATGGAAGGAATGCGTCGGTGAGGGATGA
GGAAAATACTATTGATGTTGATGTTGTGGTTGTTGTCTTCACATCACATA
AACACGCACCGGTCTCCGCTCGGCACATTCTACTATCCGTACTACTGTTC
CAACGCGTTTGTATGTTGATTTTTTATGTAGCACACACCGCGCTAACAGG
CTCACCAATGAAAAGATGTCAGTCACGGTGAGGCTGAAAACAGAACATGT
TTCTCAAGGCCATTCGTGCGTGTGGGTGCGGCGGCGTCCGGAGGCTTTCA
TTCCTTCGCACATGTACATGTCGGAGATAACCAGCAGGGTCAGGGCCTGC
CTCACTCTACTCCCCGTCGTGTGTTTAGTTTTAGATTTTTACTACTCGTG
TTTGGTAGACGGTTACCATGCACCGCAGCAGCCCTTGTGATAATTATTTC
TTCTCAGGCTGTTCAGCGGTTTCCAACGCTTGCGTGGGGTATTGATGTAC
CTGAGCTTTTGAGTAGTTCAAGTCCACCTTTTGTATCACAACTGGCTCGT
TTGGCCGCGATTTCTATCTTGGCGGTATACTACGTGCTGTGTCGACAGTT
GTGCGCGCGACGCAGTATCCTTAGCCAGAAAATTTATCTTGGTTTCAGTA
TAGTTTCCGGGTGTGGGGGACAGGGTTAGGGTTGGGGGTCACGAAACGCC
CTTCTCTTTATCTCATCGAAAGTACTGTTCCCCTCGCGAAGGCGGTCGGT
GCCGCTTATGCTGGCTGCTACAGGCCAATGGACAAGTCCCCCCCCCCCCT
AATATTTTGCTGCCGCGTCGCCTGGCTGAAGATCTTATTTGTGTACAAAT
GCGTGCCTTTTCTGCTGTCTCGACAGGCATGGATGTGGAGGAAGCGGTGG
AGATTATCAAGGCCGCACGACCGGACCTGAGGAAAATCGCCAAGGTCCCG
GAAGTGAGTCACCTGAAACGGCATCTATCCCACCGCATTGCCGTCTCGTG
ACTGGATGGCCCCCTGTGTACTTGACTGCCGCGGAGCTGTAGTGTTGTGA
TCGCCTCGTTTCCTGGTGCACCGATTCCGTCGATGTGCATCGGTCATATC
TCCCGTTCCCTGCGTTGATGAAGTCGCATTTTTGATTGCCAGCGTGTCTT
GAAGAACGATACAGGAGTCTTGCCTGTTGGTGGTCGTACGTCTTTGTTTC
TCGATGTCGAGTTCGTTGCGGAAGTTTCCGCGCTTTCATCGATCATTTTG
AGATGCTTGCCTTTCGTATTTCGGATTTTAAGGCAGTAAATAGGTCAACA
GGGGTGGCCGAAGGACCATTTCCTGACTTGATCTTGTTGCTCCAAAAGGG
CAAAGTCGTTGCTCTACACTGTGTTAAATAATCTGTTCCCGTCGCGCTGT
TTTGTGTAGCCCCTGCCTGAGTCGCTCTGTCTGACACGAAGGACGTTGTC
CCTGCGTTCTTGTCGTGCCTTCCCGGCATGTCGTTTTTCGGGCCTCCCCT
CCCTTGTCCCGTTCGTGCGTGACGCCTTTGCAGGGCGCCATGGTGACGAT
GGACATGCGCACGGACCGCGTCAGGATCTACTACGACAAGGAGAACATCG
TCACGCGCCCACCACGCGTAGGCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1068:761..3286+

>mRNA_Ecto-sp13_S_contig1068.623.1 ID=mRNA_Ecto-sp13_S_contig1068.623.1|Name=mRNA_Ecto-sp13_S_contig1068.623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1068:761..3286+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTTTCGCGTCTTTCCCGAAAGCCACCGCTCTTCTCCTAGCAGCAAC
GCTAATTTCCGCACCGATGGCGGAGGCAGGCCACGCGGGCGAGGCCGGGA
TGGAAAAGGCAAAGGAGGCCAGCAGCAGAGGACTTGCCGAGGAGGGAGTG
ACGGAGGAGGTCATAGTGGGCGAACGGCCTAGGTCACACCCACACGAGAA
GGAAAAGAAGCAGCGCAAGCCGCGGATGGCGACGATGGGAGTGCAGCAGA
CATGGAAGGAATGCGTCGGCATGGATGTGGAGGAAGCGGTGGAGATTATC
AAGGCCGCACGACCGGACCTGAGGAAAATCGCCAAGGTCCCGGAAGGCGC
CATGGTGACGATGGACATGCGCACGGACCGCGTCAGGATCTACTACGACA
AGGAGAACATCGTCACGCGCCCACCACGCGTAGGCTAA
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