mRNA_Ecto-sp13_S_contig10678.621.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10678.621.1
Unique NamemRNA_Ecto-sp13_S_contig10678.621.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10678.621.1 vs. uniprot
Match: D7G0R8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R8_ECTSI)

HSP 1 Score: 261 bits (668), Expect = 4.020e-85
Identity = 129/133 (96.99%), Postives = 132/133 (99.25%), Query Frame = 2 
Query:   83 MGTPVRSAVGRLRALGPHASGFADYLSCNTKGFLSANEEVSESFPLVVRRSGAKGYGLLCGPRPARAGEELLRVPPAVWLPYCAEAAVRKAEAGAPDFLARLSNTCAKIGGGDASKVAPVACLALELLFTLER 481
            MGTPVR+AVGRLRALGPHASGFADYLSCNTKGFL+ANEE+SESFPLV RRSGAKGYGLLCGPRPARAGEELLRVPPAVWLPYCAEAAVRKAEAGAPDFLARLSNTCAKIGGGDASKVAPVACLALELLFTLER
Sbjct:    1 MGTPVRAAVGRLRALGPHASGFADYLSCNTKGFLAANEEISESFPLVARRSGAKGYGLLCGPRPARAGEELLRVPPAVWLPYCAEAAVRKAEAGAPDFLARLSNTCAKIGGGDASKVAPVACLALELLFTLER 133
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BLAST of mRNA_Ecto-sp13_S_contig10678.621.1 vs. uniprot
Match: A0A6H5J5T1_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5T1_9PHAE)

HSP 1 Score: 248 bits (634), Expect = 8.320e-77
Identity = 128/147 (87.07%), Postives = 131/147 (89.12%), Query Frame = 2 
Query:   83 MGTPVRSAVGRLRALGPHASGFADYLSCNTKGFLSANEEVSESFPLVVRRSGAKGYGLLCGPRPA--------------RAGEELLRVPPAVWLPYCAEAAVRKAEAGAPDFLARLSNTCAKIGGGDASKVAPVACLALELLFTLER 481
            MGTPVR+AVGRLRALGPHASGFADYLSCNTKGFL+ANEEVSESFPLVVRRSGAKGYGLLCGPRPA              R GEELLRVPPAVWLPYCAEAAVRKAEAGAPDFLARLSNTCAKIGGGDA +VAPVACLALELLFTLER
Sbjct:    1 MGTPVRAAVGRLRALGPHASGFADYLSCNTKGFLAANEEVSESFPLVVRRSGAKGYGLLCGPRPASLPLRPPQCSVPMERVGEELLRVPPAVWLPYCAEAAVRKAEAGAPDFLARLSNTCAKIGGGDALEVAPVACLALELLFTLER 147
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10678.621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0R8_ECTSI4.020e-8596.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J5T1_9PHAE8.320e-7787.07SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10678contigEcto-sp13_S_contig10678:135..2352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size481
Hectar predicted targeting categoryother localisation
Exons4
Cds size399
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462546.072743-CDS-Ecto-sp13_S_contig10678:134..2631681462546.072743-CDS-Ecto-sp13_S_contig10678:134..263Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10678 135..263 -
1681462546.0829992-CDS-Ecto-sp13_S_contig10678:553..6261681462546.0829992-CDS-Ecto-sp13_S_contig10678:553..626Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10678 554..626 -
1681462546.090591-CDS-Ecto-sp13_S_contig10678:1153..12571681462546.090591-CDS-Ecto-sp13_S_contig10678:1153..1257Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10678 1154..1257 -
1681462546.0985436-CDS-Ecto-sp13_S_contig10678:2177..22701681462546.0985436-CDS-Ecto-sp13_S_contig10678:2177..2270Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10678 2178..2270 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462546.106834-UTR-Ecto-sp13_S_contig10678:2270..23521681462546.106834-UTR-Ecto-sp13_S_contig10678:2270..2352Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10678 2271..2352 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10678.621.1prot_Ecto-sp13_S_contig10678.621.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10678 135..2270 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10678.621.1

>prot_Ecto-sp13_S_contig10678.621.1 ID=prot_Ecto-sp13_S_contig10678.621.1|Name=mRNA_Ecto-sp13_S_contig10678.621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp
MGTPVRSAVGRLRALGPHASGFADYLSCNTKGFLSANEEVSESFPLVVRR
SGAKGYGLLCGPRPARAGEELLRVPPAVWLPYCAEAAVRKAEAGAPDFLA
RLSNTCAKIGGGDASKVAPVACLALELLFTLER
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mRNA from alignment at Ecto-sp13_S_contig10678:135..2352-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10678.621.1 ID=mRNA_Ecto-sp13_S_contig10678.621.1|Name=mRNA_Ecto-sp13_S_contig10678.621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2218bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10678:135..2352- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCGCGCAAATATTTTGACAAGGAGAACACATAGAACGAAGACACACGC
ACACGCACACGGCGACAAGGAGTAAGACCTACATGGGGACTCCCGTTCGC
TCTGCCGTCGGGAGGCTGAGGGCCCTAGGACCTCACGCGAGCGGTTTCGC
CGATTACCTCTCCTGCAATACTAAGGTAGGAAAAAGAATCAGACAACAAT
ACTGTTGTGGGGTATTGAGAAAAAAATCCCTGTGTCAGACAAGTGGGTGG
GTAGGTCACTTGCCTCTTGCTGTGCTCTAACCGCTACTCACACCGCACAA
TGAATGTTTGGCTTGTGTGAGGAGGTCGTGGGATGGTTGTTCTTTGAACA
ACAGCAGCGTTCGCGTTCGGTATAGACACACGCATGCAGCATGTGCTTGT
ATGGTGTACGAGATTGACGGATGCAAAATTGAAGCTTCGCAGGGGCCAGG
AGCAGACGCCGTATGTTTGACAGATGTGCGAAGCTCGACTACTTGACGAC
GAAGAGGATGCCGGGATGAAGTGGTGTGTTTTTTTCGGAAAGCTCTCATC
GAGACGCTTCCACGGCCCCCACTTTCGCCACCGTCGATGTTTGTTGCCGC
AGAGTAATCGCGCTTTCAAAATTTATCCAGGAGATGTGGTATCTTACGCA
ACGGACGGCTGTGAATACGCTCGTTCCGCACGCCTTGTCGTGGGTACATC
GAGCGCGCGGCTTGGAGTGCAGCCAGCCTTGGTAGAGACGAAGTACATCG
GTACATGGCCTGCTCTGTACTCCCTCTACTTTCTCGACCCACTATTGTAG
CTCTCACAGCTGCCCGGCCGACCGTGTCAGTAGCCGGTGGCCGTGACGCT
CTCTCAACACAGAGACGAGACGGAAGACGCGCGGGATTGCTTATTTGTTA
GGCGGGCGCATGGCGGCGGCGTCAGCCAAAACGCACCCAGTTACAATGTT
GTATTGTATTGTAGCGCACGCAAACGACGACGGACTCCTGCCCCGCTTTT
TGTGGACCCCACCATCAGGTGTTATGTTCGTGTTGGCCAACATCACACCT
ACGGCTATACAGCGTCCGGTCCCTTTTGTCTGTCTGTCTTTGCAGGGCTT
CCTGTCGGCCAACGAAGAAGTTTCCGAGAGCTTTCCCTTGGTGGTGAGGA
GGAGCGGTGCGAAGGGCTACGGGTTGCTTTGCGGGCCACGCCCTGCGAGG
TAGGAACCGGATAGCATGAAAAAACAAGCACTTTTATTGTAGAATAAGTT
TATCATCTTGCCACAATGTCGTCGCCGGGCGAGCCAGCGTGATGACAAAG
CAGCAATGGTGGTGGAAATGAAATTGATCTGGTGCTAGTTAGTGAGTGAA
GTTTGTGTCTAATGGAAAAAACATGGTCTTCTTGTCGGGGTCATTTTTTT
TGGGATTGGCAGATTCTCCGCGGTGTGCACCCTGAACCTTTTGCACCCGT
TTGTTGGTTCTTGTTGGCCCGTGACAACGGAAGTGAACACGTTCGTGTCA
GTCAGACCGGTTCGGTTCGGATGCTAAGGCGGGTACCGTGCAGACACCGG
GCCCGTTGTTAAATGTGAAGACGTCAACGACCAACTACAGCAAGACGTCT
TCGACATGTCTCTTTGCCGATCACCCCTTACGAGCAGACGGAAAGAGGTT
GTACTAGCCTGCGGTTGTCACCAAAGCCTGACAGCCTCCCACTCCGCCCG
CCCCAATGCTCTGTGCCCTTGGAAAGGGCGGGAGAGGAATTGCTTCGAGT
GCCTCCGGCGGTGTGGCTCCCTTACTGCGCAGAGGCAGCCGTTCGAAAGG
TGATGCCTGTGGAAGTTAATCGAAAGGCACAGCATCAGCATCAGCATCAG
CAGCAACATCAGCATCAGCATCAGCATCAGCATCAGCAGCAGCATCAGCA
GCAGCAGCAGCAGCAGCAGTACCTCGCAGTTTTAGGGAGGAATTGACTGG
ATCATGACAAGAGCGATGGCAGGACGATCACAGCAGCAGCAGTGCATTCT
AGTTCTCCGAAAGCGCAATTCAACCAGCCAACCCAAATTTCCATCTCCTC
TCTCTGGTTTGTCGTTGGAACCCCTGTCGTGCTGTTCAGGCCGAAGCCGG
TGCTCCCGATTTTCTGGCACGTCTGAGTAATACCTGCGCCAAGATTGGGG
GAGGGGACGCCTCAAAGGTGGCCCCGGTGGCCTGTCTCGCCCTGGAGCTT
CTGTTCACCCTCGAGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10678:135..2352-

>mRNA_Ecto-sp13_S_contig10678.621.1 ID=mRNA_Ecto-sp13_S_contig10678.621.1|Name=mRNA_Ecto-sp13_S_contig10678.621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10678:135..2352- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGACTCCCGTTCGCTCTGCCGTCGGGAGGCTGAGGGCCCTAGGACC
TCACGCGAGCGGTTTCGCCGATTACCTCTCCTGCAATACTAAGGGCTTCC
TGTCGGCCAACGAAGAAGTTTCCGAGAGCTTTCCCTTGGTGGTGAGGAGG
AGCGGTGCGAAGGGCTACGGGTTGCTTTGCGGGCCACGCCCTGCGAGGGC
GGGAGAGGAATTGCTTCGAGTGCCTCCGGCGGTGTGGCTCCCTTACTGCG
CAGAGGCAGCCGTTCGAAAGGCCGAAGCCGGTGCTCCCGATTTTCTGGCA
CGTCTGAGTAATACCTGCGCCAAGATTGGGGGAGGGGACGCCTCAAAGGT
GGCCCCGGTGGCCTGTCTCGCCCTGGAGCTTCTGTTCACCCTCGAGAGG
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