mRNA_Ecto-sp13_S_contig10674.620.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10674.620.1 vs. uniprot
Match: A0A2E1WNN8_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E1WNN8_9ACTN) HSP 1 Score: 59.7 bits (143), Expect = 6.610e-9 Identity = 30/80 (37.50%), Postives = 42/80 (52.50%), Query Frame = 1
Query: 4 EFVEVYDEPLHPTVFENEYVRVLKVDCPMNQDTMYHRHSQDSFFLFFRTAQVGPIALGTTSAQFGREVAIRAFAHPNPSR 243
E+VEV DEP H FEN Y+R+ V P T+YHRH D+F++ + V G T+ + A AF P+ S+
Sbjct: 14 EYVEVRDEPRHRHRFENXYIRLYDVLIPQEDQTLYHRHGLDTFYVMIADSSVEDQTFGETTTSXAQITAGGAFLRPHESQ 93
BLAST of mRNA_Ecto-sp13_S_contig10674.620.1 vs. uniprot
Match: A0A0G4G5J5_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G5J5_9ALVE) HSP 1 Score: 58.9 bits (141), Expect = 1.910e-8 Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 1
Query: 1 PEFVEVYDEPLHPTVFENEYVRVLKVDCPMNQDTMYHRHSQDSFFLFFRTAQV 159
PE+VEV DEP H T+F+NEY ++V T++HRHSQDS F+F +
Sbjct: 15 PEYVEVSDEPSHHTIFKNEYCIAIRVQFEKGHSTLFHRHSQDSLFVFLANISI 67
BLAST of mRNA_Ecto-sp13_S_contig10674.620.1 vs. uniprot
Match: A0A0G4EDV6_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EDV6_VITBC) HSP 1 Score: 55.8 bits (133), Expect = 2.510e-7 Identity = 24/53 (45.28%), Postives = 32/53 (60.38%), Query Frame = 1
Query: 1 PEFVEVYDEPLHPTVFENEYVRVLKVDCPMNQDTMYHRHSQDSFFLFFRTAQV 159
P FVEVYDEP H T +N+Y +KV P T YHRH +D+ F+F ++
Sbjct: 43 PPFVEVYDEPRHTTCVKNDYCIAMKVRFPCGDTTWYHRHKEDTVFVFMGNMEI 95
BLAST of mRNA_Ecto-sp13_S_contig10674.620.1 vs. uniprot
Match: D7FM72_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM72_ECTSI) HSP 1 Score: 54.3 bits (129), Expect = 5.200e-7 Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 1
Query: 88 MNQDTMYHRHSQDSFFLFFRTAQV 159
MNQDTMYHRHSQDSFFLFFRTAQ+
Sbjct: 1 MNQDTMYHRHSQDSFFLFFRTAQI 24
BLAST of mRNA_Ecto-sp13_S_contig10674.620.1 vs. uniprot
Match: A0A7C7TBA7_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiia TaxID=84992 RepID=A0A7C7TBA7_9ACTN) HSP 1 Score: 54.3 bits (129), Expect = 6.420e-7 Identity = 27/73 (36.99%), Postives = 40/73 (54.79%), Query Frame = 1
Query: 4 EFVEVYDEPLHPTVFENEYVRVLKVDCPMNQDTMYHRHSQDSFFLFFRTAQVGPIALGTTSAQFGREVAIRAF 222
E+VEV DEP H FEN+Y+R+ V P T+YHRH D+F++ + V G +++ + A AF
Sbjct: 5 EYVEVRDEPRHRHRFENDYIRLYDVLIPEGDQTLYHRHDVDTFYVMIADSSVEDRTFGESTSSTAQITAGGAF 77
BLAST of mRNA_Ecto-sp13_S_contig10674.620.1 vs. uniprot
Match: A0A2E8GIA0_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8GIA0_9ACTN) HSP 1 Score: 53.1 bits (126), Expect = 1.680e-6 Identity = 24/62 (38.71%), Postives = 36/62 (58.06%), Query Frame = 1
Query: 4 EFVEVYDEPLHPTVFENEYVRVLKVDCPMNQDTMYHRHSQDSFFLFFRTAQVGPIALGTTSA 189
E+VEV DEP H FEN+Y+R+ V P +T+YHRH D+F++ + V G ++
Sbjct: 5 EYVEVRDEPRHRHRFENDYIRLYDVLIPKGDETLYHRHGVDTFYVMIVNSSVQDRTYGAATS 66
BLAST of mRNA_Ecto-sp13_S_contig10674.620.1 vs. uniprot
Match: A0A381REV2_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381REV2_9ZZZZ) HSP 1 Score: 52.8 bits (125), Expect = 2.340e-6 Identity = 26/73 (35.62%), Postives = 38/73 (52.05%), Query Frame = 1
Query: 4 EFVEVYDEPLHPTVFENEYVRVLKVDCPMNQDTMYHRHSQDSFFLFFRTAQVGPIALGTTSAQFGREVAIRAF 222
E+V+V DEP H FEN+Y+R+ V P T+YHRH+ D+F++ + V G + A AF
Sbjct: 5 EYVDVRDEPRHRHRFENDYIRLYDVLIPEGDQTLYHRHNVDTFYVMIANSSVQDQTFGEATCSAAEITAGGAF 77
BLAST of mRNA_Ecto-sp13_S_contig10674.620.1 vs. uniprot
Match: UPI001EDF32C1 (hypothetical protein n=1 Tax=Pseudomonas sp. MMS21 TM103 TaxID=2886506 RepID=UPI001EDF32C1) HSP 1 Score: 52.0 bits (123), Expect = 5.710e-6 Identity = 24/53 (45.28%), Postives = 34/53 (64.15%), Query Frame = 1
Query: 1 PEFVEVYDEPLHPTVFENEYVRVLKVDCPMNQDTMYHRHSQDSFFLFFRTAQV 159
PE+V+V DEP H FEN+Y RV V + ++YHRHSQD+F++ +V
Sbjct: 35 PEWVDVADEPQHFHRFENDYARVYDVRFAAGEKSLYHRHSQDTFYVAVHATKV 87
BLAST of mRNA_Ecto-sp13_S_contig10674.620.1 vs. uniprot
Match: A0A836C8W9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8W9_9STRA) HSP 1 Score: 50.1 bits (118), Expect = 2.570e-5 Identity = 22/45 (48.89%), Postives = 28/45 (62.22%), Query Frame = 1
Query: 4 EFVEVYDEPLHPTVFENEYVRVLKVDCPMNQDTMYHRHSQDSFFL 138
E+VEVYDEP+H F NEY + M+HRHSQDSF++
Sbjct: 13 EYVEVYDEPIHKCQFSNEYAYCYIATINPGESCMWHRHSQDSFYV 57 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10674.620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10674.620.1 >prot_Ecto-sp13_S_contig10674.620.1 ID=prot_Ecto-sp13_S_contig10674.620.1|Name=mRNA_Ecto-sp13_S_contig10674.620.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp PEFVEVYDEPLHPTVFENEYVRVLKVDCPMNQDTMYHRHSQDSFFLFFRTback to top mRNA from alignment at Ecto-sp13_S_contig10674:5338..5580+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10674.620.1 ID=mRNA_Ecto-sp13_S_contig10674.620.1|Name=mRNA_Ecto-sp13_S_contig10674.620.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10674:5338..5580+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10674:5338..5580+ >mRNA_Ecto-sp13_S_contig10674.620.1 ID=mRNA_Ecto-sp13_S_contig10674.620.1|Name=mRNA_Ecto-sp13_S_contig10674.620.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10674:5338..5580+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |