mRNA_Ecto-sp13_S_contig10668.615.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10668.615.1
Unique NamemRNA_Ecto-sp13_S_contig10668.615.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10668.615.1 vs. uniprot
Match: D7FM59_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM59_ECTSI)

HSP 1 Score: 465 bits (1196), Expect = 4.330e-150
Identity = 262/335 (78.21%), Postives = 275/335 (82.09%), Query Frame = 1 
Query:    1 RFGLQGCLTPLEEERLGSVVEGSSAYFNPFAPQGHYSLDMTLPSDREVFRALLGLDKVNRAHVGIKGLLDPSQHGNSHHLRNFRLGGGRPVKFGLLSRRRARTKLNKRGANTTKKKAAKQAKEPAKAKKTTNKAPAGKTNAENSKPSSRDNKNGRGAKGRSLQTEKRVPLESVKPAGVWL--GFVKRFPTMPTASRISFDFLHYIRPSPGANSTPQECFDQLVQFLSDWMSCGTANGANGEDXXXXXXINGGSAFDVNASXXXXXXXXXXXXTNDNGHDDAGVVKRKKGRVIVNFLRNLCHVLYFNCNQVVDLLRVFPGEGDEHQSGKEKGNEAG 999
            RFGL+G LTPLEEERLGSVVEGSSAYFNPFAPQGHY+LDMTLPSDREVFRALLGLDKVNRAHVG+KGLLDPSQHGNSHHLRNFRLGGGRPVKFGLLSRR ARTKLNKRGA  T             AKK TNKA AGKT A N+K SSR   N RGAKG + QTEKR+P ESVKPAG     G VKRFPTMPTASRISFDFLHYIRPSPGA STP+E FDQLVQFLS+WMSCG ANG NG D      +NGGSA DVN+S XXXXXXXXXX    +GHDD G VKRKKGR+ VNFLRNLCHV YFNCNQVVDLLRVFPGE DEH+  KE GNEAG
Sbjct:  913 RFGLEGRLTPLEEERLGSVVEGSSAYFNPFAPQGHYNLDMTLPSDREVFRALLGLDKVNRAHVGMKGLLDPSQHGNSHHLRNFRLGGGRPVKFGLLSRR-ARTKLNKRGAKKTXXXXXXXXXXXXXAKKMTNKAAAGKTKAGNAKTSSRGINNARGAKGTAPQTEKRLPRESVKPAGSGTPGGSVKRFPTMPTASRISFDFLHYIRPSPGATSTPKESFDQLVQFLSNWMSCGNANGGNGADDNDNDKVNGGSAVDVNSSNXXXXXXXXXX----DGHDDGGAVKRKKGRLFVNFLRNLCHVFYFNCNQVVDLLRVFPGEDDEHEPAKENGNEAG 1242
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BLAST of mRNA_Ecto-sp13_S_contig10668.615.1 vs. uniprot
Match: A0A6H5L1G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G1_9PHAE)

HSP 1 Score: 342 bits (876), Expect = 8.730e-110
Identity = 214/333 (64.26%), Postives = 227/333 (68.17%), Query Frame = 1 
Query:    1 RFGLQGCLTPLEEERLGSVVEGSSAYFNPFAPQGHYSLDMTLPSDREVFRALLGLDKVNRAHVGIKGLLDPSQHGNSHHLRNFRLGGGRPVKFGLLSRRRARTKLNKRGANTTKKKAAKQAKEPAKAKKTTNKAPAGKTNAENSKPSSRDNKNGRGAKGRSLQTEKRVPLESVKPAGVWLGFVKRFPTMPTASRISFDFLHYIRPSPGANSTPQECFDQLVQFLSDWMSCGTANGANGEDXXXXXXINGGSAFDVNASXXXXXXXXXXXXTNDNGHDDAGVVKRKKGRVIVNFLRNLCHVLYFNCNQVVDLLRVFPGEGDEHQSGKEKGNEAG 999
            RFGL+ CLTPLEEERLGSVVEGSSAYFNPFAPQGHY+LDMTLPSDREVFRALLGLDK                                                                   AKAKKTT+KAPAGKT   N+KPSSRDNKN RG KG+S QTEKR+PLESVKPA               ASRISFDFLHYIRPSPGA STP+ECFD+LVQFLS WMSCG ANG NG  XXXXXX+NG SA DVNA XXXXXXXXXXXX     HDD+G VKRKKGRVIVNFLRNLCHV YF+CNQVVDLLRVFPGE DEH+SGKE+GNEAG
Sbjct:  260 RFGLEDCLTPLEEERLGSVVEGSSAYFNPFAPQGHYNLDMTLPSDREVFRALLGLDK-------------------------------------------------------------------AKAKKTTSKAPAGKTKTGNAKPSSRDNKNARGEKGKSPQTEKRLPLESVKPA---------------ASRISFDFLHYIRPSPGATSTPKECFDELVQFLSKWMSCGNANGGNGXXXXXXXXVNGASAIDVNAXXXXXXXXXXXXXX----HDDSGAVKRKKGRVIVNFLRNLCHVFYFSCNQVVDLLRVFPGEDDEHESGKEEGNEAG 506
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10668.615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FM59_ECTSI4.330e-15078.21Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5L1G1_9PHAE8.730e-11064.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10668contigEcto-sp13_S_contig10668:1..2479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score467.2
Seed ortholog evalue6.3e-129
Seed eggNOG ortholog2880.D7FM59
Model size999
KEGG koko:K17576
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
Cds size999
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462545.626316-CDS-Ecto-sp13_S_contig10668:0..781681462545.626316-CDS-Ecto-sp13_S_contig10668:0..78Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10668 1..78 -
1681462545.641861-CDS-Ecto-sp13_S_contig10668:402..7821681462545.641861-CDS-Ecto-sp13_S_contig10668:402..782Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10668 403..782 -
1681462545.650144-CDS-Ecto-sp13_S_contig10668:1109..13541681462545.650144-CDS-Ecto-sp13_S_contig10668:1109..1354Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10668 1110..1354 -
1681462545.6581292-CDS-Ecto-sp13_S_contig10668:1667..17921681462545.6581292-CDS-Ecto-sp13_S_contig10668:1667..1792Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10668 1668..1792 -
1681462545.666553-CDS-Ecto-sp13_S_contig10668:2308..24791681462545.666553-CDS-Ecto-sp13_S_contig10668:2308..2479Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10668 2309..2479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10668.615.1prot_Ecto-sp13_S_contig10668.615.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10668 1..2479 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10668.615.1

>prot_Ecto-sp13_S_contig10668.615.1 ID=prot_Ecto-sp13_S_contig10668.615.1|Name=mRNA_Ecto-sp13_S_contig10668.615.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=333bp
RFGLQGCLTPLEEERLGSVVEGSSAYFNPFAPQGHYSLDMTLPSDREVFR
ALLGLDKVNRAHVGIKGLLDPSQHGNSHHLRNFRLGGGRPVKFGLLSRRR
ARTKLNKRGANTTKKKAAKQAKEPAKAKKTTNKAPAGKTNAENSKPSSRD
NKNGRGAKGRSLQTEKRVPLESVKPAGVWLGFVKRFPTMPTASRISFDFL
HYIRPSPGANSTPQECFDQLVQFLSDWMSCGTANGANGEDDNDDDEINGG
SAFDVNASNGGGGGGGGGADTNDNGHDDAGVVKRKKGRVIVNFLRNLCHV
LYFNCNQVVDLLRVFPGEGDEHQSGKEKGNEAG
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mRNA from alignment at Ecto-sp13_S_contig10668:1..2479-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10668.615.1 ID=mRNA_Ecto-sp13_S_contig10668.615.1|Name=mRNA_Ecto-sp13_S_contig10668.615.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2479bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10668:1..2479- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTTTGGTCTCCAGGGCTGCCTGACACCGTTGGAAGAAGAGCGGCTCGG
TAGCGTAGTCGAGGGCTCCTCCGCATACTTCAATCCGTTCGCCCCGCAGG
GCCATTACAGTTTGGACATGACCCTGCCTAGTGACAGGGAGGTGTTCCGC
GCCCTTCTCGGTCTAGATAAGGTCAGCAGAGGATGTATCCGCGATTTCAA
CGCACATGACCTCCATGAGATTTTGGCCACGTTAAGTTTTAGAGGGCGTT
CACACCTTTCTTTCGGGTTTCGCCAGAACGTGCTTCTCTACACCCTTCTC
GAACCCACGCGTCGTGCCAAGCACATGGGTGTTTGAACGTTTGGCGCTTG
AAGCCAGAGAACGTGCAAGTTTAGTTTCCCTACTTAGACTATCACTGTAT
GCCTAGTTGGCTCGCTCGCAAAACAGCACGCGTGTGTACGTGTCGCCTTG
CTTATCCTTCGGCAGTGTCGCCTTCAGCGTTGTCGCCATCGCGCGTGCGA
ATTGCCTGCTTCGCGTTGGCCAGGGGTTGTTGCATGTACCAACGAGAACA
TGGTAATGATGCGTAGCCAAGCAACACGGTAAGACGTGAACCACCAATTA
TGCAACATCCACCACTTCTTACCCCGATTCACACGGCGGCACAATGTCAT
GCCGAAACCACTCCACACCACTGCCCTCTACATCCAGGTCAACCGTGCGC
ACGTGGGAATAAAAGGACTTCTGGACCCGTCGCAGCACGGCAATAGCCAC
CACCTGCGCAACTTCAGGCTGGGCGGCGGGAGGCCGGTCAAATTTGGTCT
TCTCTCCCGCAGGTGGGACGCATATTGATTTTATCGTCGTTGACCCCCCG
ACCCGATAATGTATCTGCTCCGCGTCTCCAGATTGGGTGGATACAACCCC
TTGTTAAGTGTGGGAACGATGCCAGATCTCTATTCTATGGCGATTACGGC
CGCCGTGAGAGTGTGCTACGACAATATTACAGCATTGAAGTCCTGGGTGT
GAGGGTGTGCAAAACAAGTGCCGTAGGTGGCAAACATCACATATTTCTGA
TCCGTACCCTGAGATCCGTCTGAGCTCCAATTGCTGATGGGATTCTGCTC
ACCTCATGACGATGCTTGACAAGAGAAGGGCGCGCACCAAGCTGAACAAA
CGCGGGGCAAATACAACCAAGAAGAAAGCGGCAAAACAAGCGAAAGAGCC
GGCCAAGGCTAAGAAAACGACGAACAAAGCACCTGCTGGCAAAACTAATG
CGGAGAACTCTAAGCCAAGCAGCCGCGACAACAAGAATGGACGAGGCGCA
AAAGGGAGAAGCCTTCAAACTGAGAAGAGAGTTCCACTCGAGAGTGTCAA
GCCAGCAGGTGTGTGGCTCGGTCGAGGATGCTGACCAAGACATCTTGACC
GGACATATCGGATGTGATGGTATATACTGCGACGCACATCGGGCCGGATA
GAATCCGTTTAACAGGGTGTGGCATCTCCATGTGCCCAACACTCACAGCG
GGGCATAGGTCGTTAGCGCACACGTTGCTCCGCAGATAATGCAGGTCAAT
TATATTATTCTAAGTCGACCCGCCCCTCACCCGGCCCAGAGTCAACGGTT
TATTTGTTTCTGTTCCCGATGACGACGATGACGATGTTGCTGTCGTTGTT
TTGTTGCTCTGCCCTTTTTCCTGAACGACGCTCATGGACTCCTGGAGGGT
TCGTCAAGCGTTTCCCCACGATGCCAACAGCATCACGAATTTCGTTCGAC
TTCTTGCACTATATCCGACCATCTCCCGGCGCAAATTCGACCCCCCAAGA
GTGTTTCGACCAGCTGGTACAATTTTTGTCAGACTGGATGTCGTGTGGTA
CCGCGAACGGTGCCAATGGCGAAGACGACAACGACGACGACGAAATCAAC
GGTGGCAGCGCTTTTGACGTAAACGCTAGTAACGGCGGCGGCGGCGGCGG
CGGCGGCGGCGCAGATACAAACGATAATGGGCATGATGACGCTGGCGTCG
TGAAGAGGAAAAAGGGACGGGTGATCGTAAACTTCCTCCGAAACCTGTGC
CATGTGCTGTACTTCAATTGCAACCAGGTGCAAAACATAGACGTCGTGGC
GTTGTCGTGCATCAACGCTTGTGCGAAGATAGCAGATTGTGGCACTCTCC
CTCTGCATTTCAAGTCTATGTCGTCATACTTGGAACAAGCATATGCTCTG
CTGCAGTGATCCATACACGTCTCAGTTGTGTGATGTTGAAAGCAACAAGA
CAAGAGCCGAGTCGGCGAAAATAGGCGCCCACAGACTCTGGCAAGCCAAA
ATTCAGATGTAGATCGCCCCTTACGTTACGTAGACAGATTCTTCAAACAC
TATACATCTTTTATGTACCGTTCACGTATTTTCCCGTTGTGTTTTGCTTA
GGTGGTCGACCTCCTGCGCGTATTCCCGGGAGAAGGCGACGAGCACCAAT
CAGGAAAGGAAAAGGGCAACGAAGCGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10668:1..2479-

>mRNA_Ecto-sp13_S_contig10668.615.1 ID=mRNA_Ecto-sp13_S_contig10668.615.1|Name=mRNA_Ecto-sp13_S_contig10668.615.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=999bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10668:1..2479- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTTTGGTCTCCAGGGCTGCCTGACACCGTTGGAAGAAGAGCGGCTCGG
TAGCGTAGTCGAGGGCTCCTCCGCATACTTCAATCCGTTCGCCCCGCAGG
GCCATTACAGTTTGGACATGACCCTGCCTAGTGACAGGGAGGTGTTCCGC
GCCCTTCTCGGTCTAGATAAGGTCAACCGTGCGCACGTGGGAATAAAAGG
ACTTCTGGACCCGTCGCAGCACGGCAATAGCCACCACCTGCGCAACTTCA
GGCTGGGCGGCGGGAGGCCGGTCAAATTTGGTCTTCTCTCCCGCAGAAGG
GCGCGCACCAAGCTGAACAAACGCGGGGCAAATACAACCAAGAAGAAAGC
GGCAAAACAAGCGAAAGAGCCGGCCAAGGCTAAGAAAACGACGAACAAAG
CACCTGCTGGCAAAACTAATGCGGAGAACTCTAAGCCAAGCAGCCGCGAC
AACAAGAATGGACGAGGCGCAAAAGGGAGAAGCCTTCAAACTGAGAAGAG
AGTTCCACTCGAGAGTGTCAAGCCAGCAGGTGTGTGGCTCGGGTTCGTCA
AGCGTTTCCCCACGATGCCAACAGCATCACGAATTTCGTTCGACTTCTTG
CACTATATCCGACCATCTCCCGGCGCAAATTCGACCCCCCAAGAGTGTTT
CGACCAGCTGGTACAATTTTTGTCAGACTGGATGTCGTGTGGTACCGCGA
ACGGTGCCAATGGCGAAGACGACAACGACGACGACGAAATCAACGGTGGC
AGCGCTTTTGACGTAAACGCTAGTAACGGCGGCGGCGGCGGCGGCGGCGG
CGGCGCAGATACAAACGATAATGGGCATGATGACGCTGGCGTCGTGAAGA
GGAAAAAGGGACGGGTGATCGTAAACTTCCTCCGAAACCTGTGCCATGTG
CTGTACTTCAATTGCAACCAGGTGGTCGACCTCCTGCGCGTATTCCCGGG
AGAAGGCGACGAGCACCAATCAGGAAAGGAAAAGGGCAACGAAGCGGGG
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