mRNA_Ecto-sp13_S_contig10666.614.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10666.614.1
Unique NamemRNA_Ecto-sp13_S_contig10666.614.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10666.614.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 1.630e-58
Identity = 104/108 (96.30%), Postives = 106/108 (98.15%), Query Frame = 1
Query:   52 DVGRTSSLQHSVAVSIAQEFGLKGKQRLAFFIFANGLLAQSRPNPPEALRIYIGGGAGTGKSHVLKAIKAFIECPAIAAEVPRGRLLTVAYQGKQAASVGGTTVHSVC 375
            DVGRTS+LQHSVAVSIAQEFGL  +QRLAFFIFANGLLAQSRPNPPEALRIYIGGGAGTGKSHVLKAIKAFIECPAIAAEVPRGRLLTVAYQGKQAASVGGTTVHSVC
Sbjct: 1481 DVGRTSNLQHSVAVSIAQEFGLNRRQRLAFFIFANGLLAQSRPNPPEALRIYIGGGAGTGKSHVLKAIKAFIECPAIAAEVPRGRLLTVAYQGKQAASVGGTTVHSVC 1588          
BLAST of mRNA_Ecto-sp13_S_contig10666.614.1 vs. uniprot
Match: A0A6H5KIB1_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIB1_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 6.050e-42
Identity = 76/108 (70.37%), Postives = 91/108 (84.26%), Query Frame = 1
Query:   52 DVGRTSSLQHSVAVSIAQEFGLKGKQRLAFFIFANGLLAQSRPNPPEALRIYIGGGAGTGKSHVLKAIKAFIECPAIAAEVPRGRLLTVAYQGKQAASVGGTTVHSVC 375
            D+G  ++LQH  A SIAQEFGL  KQR AF+IFANGLLAQ RP+PP ALR+YIGGGAGTGK+HVL+AI+AF++ P +   +PR RLL VA+QGKQAA+VGGTTVHSVC
Sbjct: 1717 DIGAVAALQHVAAFSIAQEFGLNRKQRQAFYIFANGLLAQCRPDPPPALRLYIGGGAGTGKTHVLRAIRAFVDSPPVKRLLPRARLLCVAFQGKQAAAVGGTTVHSVC 1824          
BLAST of mRNA_Ecto-sp13_S_contig10666.614.1 vs. uniprot
Match: A0A6H5KXW4_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXW4_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 3.840e-41
Identity = 74/108 (68.52%), Postives = 91/108 (84.26%), Query Frame = 1
Query:   52 DVGRTSSLQHSVAVSIAQEFGLKGKQRLAFFIFANGLLAQSRPNPPEALRIYIGGGAGTGKSHVLKAIKAFIECPAIAAEVPRGRLLTVAYQGKQAASVGGTTVHSVC 375
            D+G  ++LQH  A +IAQEFGL  KQR AF+IFANGLL+Q RP+PP ALR+YIGGGAGTGK+HVL+AI+AF++ P +   +PR RLL VA+QGKQAA+VGGTTVHSVC
Sbjct:  268 DIGAVAALQHVAAFTIAQEFGLNRKQRQAFYIFANGLLSQFRPDPPPALRLYIGGGAGTGKTHVLRAIRAFVDSPPVKRLLPRARLLCVAFQGKQAAAVGGTTVHSVC 375          
BLAST of mRNA_Ecto-sp13_S_contig10666.614.1 vs. uniprot
Match: A0A6H5L0L4_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L4_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 3.840e-41
Identity = 75/99 (75.76%), Postives = 89/99 (89.90%), Query Frame = 1
Query:   52 DVGRTSSLQHSVAVSIAQEFGLKGKQRLAFFIFANGLLAQSRPNPPEALRIYIGGGAGTGKSHVLKAIKAFIECPAIAAEVPRGRLLTVAYQGKQAASV 348
            DVG  ++ QH VAVSIAQEFGL  KQRLAF+IFANGLLAQ+RP+PPEALR+YIGGGAGTGKSHVLKA+KAFI+CP +A ++P GRLLTVA+QGK A++V
Sbjct: 1481 DVGAIATSQHPVAVSIAQEFGLNRKQRLAFYIFANGLLAQNRPDPPEALRLYIGGGAGTGKSHVLKAMKAFIDCPTLAGQIPPGRLLTVAFQGKMASAV 1579          
BLAST of mRNA_Ecto-sp13_S_contig10666.614.1 vs. uniprot
Match: A0A6H5JN07_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN07_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.510e-29
Identity = 57/90 (63.33%), Postives = 75/90 (83.33%), Query Frame = 1
Query:  106 EFGLKGKQRLAFFIFANGLLAQSRPNPPEALRIYIGGGAGTGKSHVLKAIKAFIECPAIAAEVPRGRLLTVAYQGKQAASVGGTTVHSVC 375
            EFGL  KQRLAFF+F+NG+LA+      ++LR+YIGGGA +GKSHVLKA+KAFIECPA+  ++   R+L VA++G+QAA+VGGTT+HSVC
Sbjct: 1399 EFGLNRKQRLAFFVFSNGMLAKKVSPGSDSLRLYIGGGAKSGKSHVLKAMKAFIECPALVGQIEDSRMLAVAFRGQQAAAVGGTTIHSVC 1488          
BLAST of mRNA_Ecto-sp13_S_contig10666.614.1 vs. uniprot
Match: A0A6H5JT57_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT57_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 5.100e-29
Identity = 63/107 (58.88%), Postives = 76/107 (71.03%), Query Frame = 1
Query:   52 DVGRTSSLQHSVAVSIAQEFGLKGKQRLAFFIFANGLLAQSRPNPPEALRIYIGGGAGTGKSHVLKAIKAFIECPAIAAEVPRGRLLTVAYQGKQAASVGGTTVHSV 372
            DVGR+S  QH     IA EFGL  KQRLAFFIF    +A+     P ALR+++ GGAG+GKS+VL+AI A I+CPA+   V  G LLTVA+QGK AA+VGG TVHSV
Sbjct:  735 DVGRSSPQQHDAVRRIADEFGLNRKQRLAFFIFGAAWIARDGVPTPNALRLHVSGGAGSGKSYVLRAIVALIDCPALKGVVQPGGLLTVAFQGKAAANVGGNTVHSV 841          
BLAST of mRNA_Ecto-sp13_S_contig10666.614.1 vs. uniprot
Match: A0A6H5KPD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD9_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.500e-28
Identity = 58/106 (54.72%), Postives = 72/106 (67.92%), Query Frame = 1
Query:   52 DVGRTSSLQHSVAVSIAQEFGLKGKQRLAFFIFANGLLAQSRPNPPEALRIYIGGGAGTGKSHVLKAIKAFIECPAIAAEVPRGRLLTVAYQGKQAASVGGTTVHS 369
            DVG T   QH     IA E GL  KQRLAFF+F    + ++     +ALR+++ GGAG+G S VL+AIKA I+CPA+   V  GRLLT+A+QGKQAA VGG TVHS
Sbjct:   16 DVGPTYPQQHDTVRRIADELGLNRKQRLAFFLFGAAWIRRTASPTADALRLHVSGGAGSGNSCVLRAIKALIDCPALKGVVRPGRLLTLAFQGKQAACVGGNTVHS 121          
BLAST of mRNA_Ecto-sp13_S_contig10666.614.1 vs. uniprot
Match: A0A6H5K882_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K882_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 5.440e-15
Identity = 48/111 (43.24%), Postives = 59/111 (53.15%), Query Frame = 1
Query:   46 RHDVGRTSSLQHSVAVSIAQEFGLKGKQRLAFFIFANGLLAQSR-PNPPEALRIYIGGGAGTGKSHVLKAIKAFIECPAIAAEVPRGRLLTVAYQGKQAASVGGTTVHSVC 375
            R D+G  +  QH VA  IAQEFGL  +QRLAF+IFANG+ A+ R P+ P                                  +  G +L VA+QGKQAASVGGTT+HSVC
Sbjct: 1054 RTDIGAAAPSQHPVAFRIAQEFGLNREQRLAFYIFANGIFAKKRSPHSP----------------------------------IEEGGMLAVAFQGKQAASVGGTTIHSVC 1130          
BLAST of mRNA_Ecto-sp13_S_contig10666.614.1 vs. uniprot
Match: A0A225X1P8_9STRA (ATP-dependent DNA helicase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X1P8_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.070e-6
Identity = 37/96 (38.54%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   97 IAQEFGLKGKQRLAFFIFANGLLAQSRPNPPEA----LRIYIGGGAGTGKSHVLKAIKAFIECPAIAAEVPRGRLLTVAYQGKQAASVGGTTVHSV 372
            ++++F L  KQ  AF I   G   QS  + P+     +  ++GGG GTGKS V++A++A  E     + V R  L TVAYQG  A +V G T+H++
Sbjct:  106 VSRKFNLNQKQHKAF-IRVGGPFLQSLLSSPDQDVDQVIAFLGGGPGTGKSQVIRALQALAE-----SWVSRDALKTVAYQGVAAEAVNGQTIHNL 195          
BLAST of mRNA_Ecto-sp13_S_contig10666.614.1 vs. uniprot
Match: A0A225VZC1_9STRA (ATP-dependent DNA helicase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VZC1_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.250e-6
Identity = 37/107 (34.58%), Postives = 55/107 (51.40%), Query Frame = 1
Query:   64 TSSLQHSVAVSIAQEFGLKGKQRLAFFI----FANGLLAQSRPNPPEALRIYIGGGAGTGKSHVLKAIKAFIECPAIAAEVPRGRLLTVAYQGKQAASVGGTTVHSV 372
            +S + +S  V +++ F L  KQ  AF      F   LL+ S  N P+ L  ++GGG GTGKS V++A++      A         + TVAYQG  A +  G T+H +
Sbjct:   41 SSIVSNSSLVDVSRSFCLNEKQHKAFVRVGRPFLQSLLSTSPDNVPQCL-FFLGGGPGTGKSQVIRALQVLAHSWA-----SENAVKTVAYQGVAAEAANGQTIHKL 141          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10666.614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7G3U9_ECTSI1.630e-5896.30ATP-dependent DNA helicase n=2 Tax=Ectocarpus sili... [more]
A0A6H5KIB1_9PHAE6.050e-4270.37ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KXW4_9PHAE3.840e-4168.52ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5L0L4_9PHAE3.840e-4175.76Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5JN07_9PHAE1.510e-2963.33ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JT57_9PHAE5.100e-2958.88ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KPD9_9PHAE2.500e-2854.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K882_9PHAE5.440e-1543.24ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A225X1P8_9STRA2.070e-638.54ATP-dependent DNA helicase n=1 Tax=Phytophthora me... [more]
A0A225VZC1_9STRA3.250e-634.58ATP-dependent DNA helicase n=1 Tax=Phytophthora me... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10666contigEcto-sp13_S_contig10666:5266..5640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score206.1
Seed ortholog evalue9.8e-51
Seed eggNOG ortholog2880.D7G3U9
Model size375
KEGG koko:K15255,ko:K20647
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
Cds size375
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462545.5853992-CDS-Ecto-sp13_S_contig10666:5265..56401681462545.5853992-CDS-Ecto-sp13_S_contig10666:5265..5640Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10666 5266..5640 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10666.614.1prot_Ecto-sp13_S_contig10666.614.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10666 5266..5640 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10666.614.1

>prot_Ecto-sp13_S_contig10666.614.1 ID=prot_Ecto-sp13_S_contig10666.614.1|Name=mRNA_Ecto-sp13_S_contig10666.614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
DPRGRLGPSAPGQENRHDVGRTSSLQHSVAVSIAQEFGLKGKQRLAFFIF
ANGLLAQSRPNPPEALRIYIGGGAGTGKSHVLKAIKAFIECPAIAAEVPR
GRLLTVAYQGKQAASVGGTTVHSVC
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mRNA from alignment at Ecto-sp13_S_contig10666:5266..5640-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10666.614.1 ID=mRNA_Ecto-sp13_S_contig10666.614.1|Name=mRNA_Ecto-sp13_S_contig10666.614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10666:5266..5640- (Ectocarpus species13 EcNAP12_S_4_19m)
GACCCTCGGGGCCGTCTGGGGCCGTCTGCGCCAGGACAAGAAAACCGTCA TGACGTCGGGCGTACTTCAAGCTTGCAACATTCTGTCGCCGTCAGCATTG CGCAAGAGTTCGGCCTCAAAGGGAAGCAGAGGCTGGCCTTCTTCATCTTC GCTAACGGGCTGCTCGCTCAAAGTCGTCCCAATCCACCCGAGGCACTTCG CATATACATCGGTGGAGGGGCTGGGACGGGCAAGAGCCACGTCCTCAAGG CCATCAAAGCCTTCATCGAGTGCCCAGCAATCGCTGCAGAAGTACCGCGC GGACGATTGCTCACGGTGGCTTATCAAGGAAAGCAAGCAGCTAGTGTCGG TGGAACTACCGTTCACTCTGTCTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10666:5266..5640-

>mRNA_Ecto-sp13_S_contig10666.614.1 ID=mRNA_Ecto-sp13_S_contig10666.614.1|Name=mRNA_Ecto-sp13_S_contig10666.614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10666:5266..5640- (Ectocarpus species13 EcNAP12_S_4_19m)
GACCCTCGGGGCCGTCTGGGGCCGTCTGCGCCAGGACAAGAAAACCGTCA
TGACGTCGGGCGTACTTCAAGCTTGCAACATTCTGTCGCCGTCAGCATTG
CGCAAGAGTTCGGCCTCAAAGGGAAGCAGAGGCTGGCCTTCTTCATCTTC
GCTAACGGGCTGCTCGCTCAAAGTCGTCCCAATCCACCCGAGGCACTTCG
CATATACATCGGTGGAGGGGCTGGGACGGGCAAGAGCCACGTCCTCAAGG
CCATCAAAGCCTTCATCGAGTGCCCAGCAATCGCTGCAGAAGTACCGCGC
GGACGATTGCTCACGGTGGCTTATCAAGGAAAGCAAGCAGCTAGTGTCGG
TGGAACTACCGTTCACTCTGTCTGC
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