mRNA_Ecto-sp13_S_contig10661.610.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10661.610.1 vs. uniprot
Match: D7G9J3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9J3_ECTSI) HSP 1 Score: 315 bits (806), Expect = 5.380e-101 Identity = 168/175 (96.00%), Postives = 171/175 (97.71%), Query Frame = 1
Query: 358 LLRLEGEADGPEAASSVELETPAKTALAFTLPVTNWLRRGQRFTMKAVLESGATSSTTLSGAKTIEVPALATKDFALRFLAFKEGVTTATVTFTNHDTDEYLFHRLAFKVTPPNVQETIVLEGSVRSLTRRLITVANPLRPDEPITFPTGDPAAAADNAGPAGGVGTAAAGGHAE 882
L RLEGEADGPEAASS ELETPAKTALAFTLPV NWLRRGQRFTMKAVLESGA+SSTTLSGAKTIEVPALATKDFALRFLAFKEGVTTATVTFTN++TDEYLFHRL FKVTPPNVQETIVLEGSVRSLTRRLITVANPLRPDEPITFPTGDPAAAADNAGPAGGVGTAAAGGHAE
Sbjct: 81 LYRLEGEADGPEAASSEELETPAKTALAFTLPVANWLRRGQRFTMKAVLESGASSSTTLSGAKTIEVPALATKDFALRFLAFKEGVTTATVTFTNNETDEYLFHRLTFKVTPPNVQETIVLEGSVRSLTRRLITVANPLRPDEPITFPTGDPAAAADNAGPAGGVGTAAAGGHAE 255
BLAST of mRNA_Ecto-sp13_S_contig10661.610.1 vs. uniprot
Match: A0A6H5K5Z3_9PHAE (MSP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Z3_9PHAE) HSP 1 Score: 216 bits (551), Expect = 4.990e-60 Identity = 112/116 (96.55%), Postives = 113/116 (97.41%), Query Frame = 1
Query: 358 LLRLEGEADGPEAASSVELETPAKTALAFTLPVTNWLRRGQRFTMKAVLESGATSSTTLSGAKTIEVPALATKDFALRFLAFKEGVTTATVTFTNHDTDEYLFHRLAFKVTPPNVQ 705
L RLEGEADGPEAASSVELETPAKTALAFTLPV NWLRRGQRFTMKAVLESGA+SSTTLSGAKTIEVPALATKDFALRFLAFKEGVTTATVTFTNHDTDEYLFHRL FKVTPPNVQ
Sbjct: 5362 LYRLEGEADGPEAASSVELETPAKTALAFTLPVANWLRRGQRFTMKAVLESGASSSTTLSGAKTIEVPALATKDFALRFLAFKEGVTTATVTFTNHDTDEYLFHRLTFKVTPPNVQ 5477
BLAST of mRNA_Ecto-sp13_S_contig10661.610.1 vs. uniprot
Match: A0A835YMW6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMW6_9STRA) HSP 1 Score: 139 bits (349), Expect = 3.750e-33 Identity = 79/153 (51.63%), Postives = 94/153 (61.44%), Query Frame = 1
Query: 343 NNNKTLLRLEGEADGPEAASS-VELETPAKTALAFTLPVTNWLRRGQRFTMKAVLESGATSSTTLSGAKTIEVPALATKDFALRFLAFKEGVTTATVTFTNHDTDEYLFHRLAFKVTPPNVQETIVLEGSVRSLTRRLITVANPLRPDEPITF 798
+ N + + G A P A +EL TPAKT L+F +PV NWLRR QRF L GA +ST L GA T+EVP L K +ALRF+A+KEGVTTA VTFT T EY FH L P VQETI +E SVR+ R +IT+ NPL P IT
Sbjct: 727 DGNGIMYAMTGTAGPPLAEGPPIELATPAKTPLSFAVPVRNWLRRPQRFDAAVRLGDGAHASTQLKGASTVEVPPLGAKQYALRFVAYKEGVTTAQVTFTCPHTGEYQFHDLVITAGEPEVQETIAMEASVRNAARHVITIDNPLPPSAAITL 879
BLAST of mRNA_Ecto-sp13_S_contig10661.610.1 vs. uniprot
Match: A0A7S2CW33_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CW33_9STRA) HSP 1 Score: 138 bits (347), Expect = 6.530e-33 Identity = 74/154 (48.05%), Postives = 99/154 (64.29%), Query Frame = 1
Query: 343 NNNKTLLRLEGEADGPEAASSVELETPAKTALAFTLPVTNWLRRGQRFTMKAVLESG-ATSSTTLSGAKTIEVPALATKDFALRFLAFKEGVTTATVTFTNHDTDEYLFHRLAFKVTPPNVQETIVLEGSVRSLTRRLITVANPLRPDEPITFP 801
N + + L+G + PE + E+ETPAK L LPV NWL R QRF +K L++ A +ST + G T++V AL T D+ ++F A+KEG A VTFTN +T EYLFH + VT P V +T+VLE S+R + RRLIT+ NPL D P+TFP
Sbjct: 544 NGSAEMYTLKGTSGPPECEGTTEVETPAKAILPVALPVKNWLPRAQRFQVKIELDADTAPASTEVDGTPTVDVGALGTVDYVVKFKAYKEGTAGARVTFTNVETGEYLFHDIKATVTAPGVIDTLVLESSIRQVARRLITIDNPLPADMPLTFP 697
BLAST of mRNA_Ecto-sp13_S_contig10661.610.1 vs. uniprot
Match: A0A7S2CXL6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CXL6_9STRA) HSP 1 Score: 138 bits (347), Expect = 7.360e-33 Identity = 74/154 (48.05%), Postives = 99/154 (64.29%), Query Frame = 1
Query: 343 NNNKTLLRLEGEADGPEAASSVELETPAKTALAFTLPVTNWLRRGQRFTMKAVLESG-ATSSTTLSGAKTIEVPALATKDFALRFLAFKEGVTTATVTFTNHDTDEYLFHRLAFKVTPPNVQETIVLEGSVRSLTRRLITVANPLRPDEPITFP 801
N + + L+G + PE + E+ETPAK L LPV NWL R QRF +K L++ A +ST + G T++V AL T D+ ++F A+KEG A VTFTN +T EYLFH + VT P V +T+VLE S+R + RRLIT+ NPL D P+TFP
Sbjct: 1242 NGSAEMYTLKGTSGPPECEGTTEVETPAKAILPVALPVKNWLPRAQRFQVKIELDADTAPASTEVDGTPTVDVGALGTVDYVVKFKAYKEGTAGARVTFTNVETGEYLFHDIKATVTAPGVIDTLVLESSIRQVARRLITIDNPLPADMPLTFP 1395
BLAST of mRNA_Ecto-sp13_S_contig10661.610.1 vs. uniprot
Match: D7FJY6_ECTSI (Hydrocephalus-inducing protein, Hydin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJY6_ECTSI) HSP 1 Score: 133 bits (335), Expect = 3.080e-31 Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 3
Query: 3 GHPPLALTLTGSCVSQPSDSVHLLSFKSRARVATAQSVSLENPTDKNWFITPVLKGEHWQGAGELQ 200
GHPPL LTLTGSCVSQPSDSVHLLSFKSRARVA AQSVSLENPTDKNWFITPVLKGEHWQGAG+LQ
Sbjct: 5119 GHPPLVLTLTGSCVSQPSDSVHLLSFKSRARVAAAQSVSLENPTDKNWFITPVLKGEHWQGAGQLQ 5184
BLAST of mRNA_Ecto-sp13_S_contig10661.610.1 vs. uniprot
Match: A0A8J2SKS6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SKS6_9STRA) HSP 1 Score: 116 bits (291), Expect = 2.090e-25 Identity = 68/166 (40.96%), Postives = 93/166 (56.02%), Query Frame = 1
Query: 307 ERHPPVEVEVAVNNNKTLL-RLEGEADGPEAASSVELETPAKTALAFTLPVTNWLRRGQRFTMKAVLESGATSSTTLSGAKTIEVPALATKDFALRFLAFKEGVTTATVTFTNHDTDEYLFHRLAFKVTPPNVQETIVLEGSVRSLTRRLITVANPLRPDEPITFP 801
E + E+ VA+ + +L L+G+A PE L TPAK +L TLPV NWL Q + L G+ ST L G T +V T+++ LRF ++K G TAT TFTN + EY+ + L+ +VT V +T LE +R RRLIT+ NPL D P+TFP
Sbjct: 4358 EGYHSAELFVALPDGSAVLYNLQGKAGPPETLVIDPLTTPAKASLPITLPVQNWLSTPQHLDVAFELGEGSDDSTFLEGTSTFDVAGAETRNYVLRFYSYKVGTVTATATFTNPGSGEYITYELSVEVTEAGVVQTYNLEAPIRQTARRLITIDNPLPADAPVTFP 4523
BLAST of mRNA_Ecto-sp13_S_contig10661.610.1 vs. uniprot
Match: A0A7S1XCM8_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1XCM8_9CHLO) HSP 1 Score: 109 bits (273), Expect = 4.440e-23 Identity = 62/139 (44.60%), Postives = 89/139 (64.03%), Query Frame = 1
Query: 358 LLRLEGEADGPEAASSVELETPAKTALAFTLPVTNWLRRGQRFTMKAVLESGATSSTTLSGAKTIEVPALATKDFALRFLAFKEGVTTATVTFTNHDTDEYLFHRLAFKVTPPNVQETIVLEGSVRSLTRRLITVANPL 774
L +L G A P + L+ AK+ + LPV NWL + QRF + + + G +TTLSGA+ I+VP L+ +++ F AFKEGVT ATVTFTN T EYLF++LAFK PP ++ ++ L +VR +T ++I + NPL
Sbjct: 1168 LYKLVGVAGPPAPEGELALDVTAKSRFSGVLPVHNWLPQPQRFKV-TIDKGGGDPATTLSGAEHIDVPNLSEREYRYAFYAFKEGVTEATVTFTNEVTGEYLFYKLAFKAGPPGLRGSLSLGCAVRQVTSQMIRLENPL 1305
BLAST of mRNA_Ecto-sp13_S_contig10661.610.1 vs. uniprot
Match: A0A7S2QVW6_9STRA (Hypothetical protein n=2 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVW6_9STRA) HSP 1 Score: 106 bits (264), Expect = 7.280e-22 Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = 3
Query: 3 GHPPLALTLTGSCVSQPSDSVHLLSFKSRARVATAQSVSLENPTDKNWFITPVLKGEHWQGAGELQIPAKGTAEYAIEFFPLAMTSA 263
G PL LT +G CV QP D++ LSFKS AR A Q+VS+ NPTDK W +TPV+KG HW G E+ +P KG+ +Y + +FPL+MT A
Sbjct: 3789 GSDPLTLTCSGGCVPQPDDTIKTLSFKSSARKAFEQTVSVSNPTDKVWVLTPVMKGIHWFGMDEISVPGKGSVDYKVTYFPLSMTGA 3875
BLAST of mRNA_Ecto-sp13_S_contig10661.610.1 vs. uniprot
Match: A0A315VMU0_GAMAF (MSP domain-containing protein n=2 Tax=Gambusia affinis TaxID=33528 RepID=A0A315VMU0_GAMAF) HSP 1 Score: 97.4 bits (241), Expect = 7.760e-19 Identity = 60/141 (42.55%), Postives = 80/141 (56.74%), Query Frame = 1
Query: 358 LLRLEGEADGPEAASSVELETPAKTALAFTLPVTNWLRRGQRFT--MKAVLESGATSSTTLSGAKTIEVPALATKDFALRFLAFKEGVTTATVTFTNHDTDEYLFHRLAFKVTPPNVQETIVLEGSVRSLTRRLITVANPL 774
L L+G + P+A + + PAKT L V NWL R QRF+ ++ V + L G K+IEVPALA +D+ + F A+KEG TA TF N T E+LF+ + FKV+ P V TI LE SVR ++ V NPL
Sbjct: 4438 LFNLQGNSFAPKAEDIISQDLPAKTQGKVVLQVNNWLTRLQRFSVVLEVVKPEKPDPTVFLKGHKSIEVPALAKRDYKMSFNAYKEGEYTARATFRNETTGEFLFYLINFKVSSPGVLATINLETSVRRAACGVVHVENPL 4578 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10661.610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10661.610.1 >prot_Ecto-sp13_S_contig10661.610.1 ID=prot_Ecto-sp13_S_contig10661.610.1|Name=mRNA_Ecto-sp13_S_contig10661.610.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp MKAVLESGATSSTTLSGAKTIEVPALATKDFALRFLAFKEGVTTATVTFTback to top mRNA from alignment at Ecto-sp13_S_contig10661:8..3191- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10661.610.1 ID=mRNA_Ecto-sp13_S_contig10661.610.1|Name=mRNA_Ecto-sp13_S_contig10661.610.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3184bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10661:8..3191- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10661:8..3191- >mRNA_Ecto-sp13_S_contig10661.610.1 ID=mRNA_Ecto-sp13_S_contig10661.610.1|Name=mRNA_Ecto-sp13_S_contig10661.610.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10661:8..3191- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |