mRNA_Ecto-sp13_S_contig10660.609.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10660.609.1
Unique NamemRNA_Ecto-sp13_S_contig10660.609.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10660.609.1 vs. uniprot
Match: D7FJI9_ECTSI (Site-specific DNA-methyltransferase (cytosine-N(4)-specific) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI9_ECTSI)

HSP 1 Score: 441 bits (1134), Expect = 3.040e-151
Identity = 221/245 (90.20%), Postives = 233/245 (95.10%), Query Frame = 1
Query:   70 QQASTCFVPSVPAPVCTFGICVSHQPSSKMNTEYRYETMLTSGSVLAESQGAPEIRDALEEGLRLQWSFGFPYTPKELPVLTHPFFPYPAGMQPSTAHHLLETVLTGRSVLDPFVGGGTVIVEALRAGRLGVGSDVSPLSLFVSRGRTWIASDSELEELREAVRSVCEAAAAKLGETHTRQVSGKDWDCIESEIADYLAARSKDGVKDEIRDALWFVLAVARPKAATKRRRGVEHVVACEVFHTV 804
            ++   CFVPS+ APVCTFGICVSHQP S+   EYRY+TMLTSGSVLAESQGAPEIR+ALEEGLRLQWSFGFPYTPKELPVLT+ FFPYPAGMQP+TAHHLLETVLTGRSVLDPFVGGGTVIVEALRAGRLGVGSDVSPLSL VSRGRTWIASDS+LEELREAVRSVCEAAAAKLGETHTRQVSGKDWDCIESEIA+YLA RSKDGVKDE+RDALWFVLAVARPKAATKRRRGVEHVVA EVFH+V
Sbjct:    9 RKVQRCFVPSILAPVCTFGICVSHQPRSRKRKEYRYDTMLTSGSVLAESQGAPEIREALEEGLRLQWSFGFPYTPKELPVLTNAFFPYPAGMQPATAHHLLETVLTGRSVLDPFVGGGTVIVEALRAGRLGVGSDVSPLSLLVSRGRTWIASDSQLEELREAVRSVCEAAAAKLGETHTRQVSGKDWDCIESEIANYLA-RSKDGVKDELRDALWFVLAVARPKAATKRRRGVEHVVAWEVFHSV 252          
BLAST of mRNA_Ecto-sp13_S_contig10660.609.1 vs. uniprot
Match: A0A836CR36_9STRA (Site-specific DNA-methyltransferase (cytosine-N(4)-specific) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR36_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.680e-38
Identity = 88/220 (40.00%), Postives = 122/220 (55.45%), Query Frame = 1
Query:  136 SHQPSSKMNTEYRYETMLTSGSVLAESQGAPEIRDALEEGLRLQWSFGFPYTPKELPVLTHPFFPYPAGMQPSTAHHLLETVLTGRSVLDPFVGGGTVIVEALRAGRLGVGSDVSPLSLFVSRGRTWIASDSELEELREAVRSVCEAAAAKLGETHTRQVSGKDWDCIESEIADYLAARSKDGVKDEIRDALWFVLAVARPKAATKRRRGVEHVVACEVF 795
            +H  S +   +++Y+ +    SV  E+ G PE+   L E  RLQW++GFP  P  +  LTH F  YPA MQ +TA HLLETV+ G SV DPFVGGGTV++EALRAGR   G+DVSPL+LFV+RGRTW+ S + L  L   V       A  +    +   S + W+ +   +    A R       E+ + LWFV + A  +AA  R      V+  + +
Sbjct:   26 THAGSVRDKVQHQYDNIWE--SVRCETNGPPEVTRELVEASRLQWAYGFPQVPAGMTRLTHGFHYYPASMQAATAKHLLETVMPGTSVADPFVGGGTVLIEALRAGRKAYGADVSPLALFVARGRTWMPSAATLSALETLV-------AEHIAGVDSEGCSLRSWEPVRRVVQRASAQRP------ELAEPLWFVYSTALQQAAKARHSPRRRVLPPQFY 230          
BLAST of mRNA_Ecto-sp13_S_contig10660.609.1 vs. uniprot
Match: A0A7S2G0U6_9EUKA (Site-specific DNA-methyltransferase (cytosine-N(4)-specific) (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2G0U6_9EUKA)

HSP 1 Score: 109 bits (273), Expect = 6.100e-24
Identity = 58/145 (40.00%), Postives = 82/145 (56.55%), Query Frame = 1
Query:  217 QGAPEIRDALEEGLRLQWSFGFPYTPKELPVLTHPFFPYPAGMQPSTAHHLLETVLTGRSVLDPFVGGGTVIVEALRAGRLGVGSDVSPLSLFVSRGRTWIASDSELEELREAVRSVCEAAAAKLGETHTRQVSGKDWDCIESEI 651
            +GA  + + L   L  QW+FGFP  P+    LTH F+ YPAGMQ   A +LL+T+  G  +LDPFVGGGT ++E +R G   +G+DVSPL+LF +   TW+ S+ EL  +RE   ++  A          R   G   D +  E+
Sbjct:   21 EGASGLAEPLAAALCAQWAFGFPRVPRPAAQLTHGFYQYPAGMQAVAAVNLLKTMPPG-VLLDPFVGGGTTLIEGMRCGWKTIGADVSPLALFATTHHTWLMSEEELASMREQAVAIISAVDPSYDVQLARPTPGAGVDDVAGEV 164          
BLAST of mRNA_Ecto-sp13_S_contig10660.609.1 vs. uniprot
Match: A0A812IMW5_SYMPI (Site-specific DNA-methyltransferase (cytosine-N(4)-specific) (Fragment) n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812IMW5_SYMPI)

HSP 1 Score: 105 bits (263), Expect = 1.380e-22
Identity = 71/178 (39.89%), Postives = 90/178 (50.56%), Query Frame = 1
Query:  217 QGAPEIRDALEEGLRLQWSFGFPYTPKELPVLTHPFFPYPAGMQPSTAHHLLETVLTGRSVLDPFVGGGTVIVEALRAGRLGVGSDVSPLSLFVSRGRTWIASDSELEELREAVRSVCEAAAAKLGETHTRQVSGKDWDCIESEIADYLAARSKDGVKDE--IRDALWFVLAVARPKA 744
            +G  E+ D L + LR QW +G+P  P     LTH FF Y A MQ  TA  LL    +  S+LDPF G GTV++EA RAGR   GSD SPL+ FV+R  T +   S L+ELR     V  A   +LG           W+ +          RS+ G   E  +  ALWF L VA  +A
Sbjct:   23 EGPSEVTDLLADALRYQWLYGYPGVPDGEEQLTHGFFKYVASMQALTARQLLRLNPSASSILDPFCGSGTVLIEAARAGRAATGSDASPLAAFVARHHTDVEGVS-LDELRAQADVVAPANELELG-----------WNDL----------RSRLGALPEGSVTSALWFCLLVALQRA 178          
BLAST of mRNA_Ecto-sp13_S_contig10660.609.1 vs. uniprot
Match: A0A1Q9CXJ7_SYMMI (Site-specific DNA-methyltransferase (cytosine-N(4)-specific) n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9CXJ7_SYMMI)

HSP 1 Score: 103 bits (256), Expect = 4.880e-21
Identity = 67/174 (38.51%), Postives = 89/174 (51.15%), Query Frame = 1
Query:  214 SQGAPEIRDALEEGLRLQWSFGFPYTPKELPVLTHPFFPYPAGMQPSTAHHLLETVLTGRSVLDPFVGGGTVIVEALRAGRLG-VGSDVSPLSLFVSRGRTWIASDSELEELREAVRSVCEAAAAKLGETHTRQVSGKDWDCIESEIADYLAARSKDGVKDEIRDALWFVLAVA 732
            SQG   I + LE  L  QW +G+P  P     LTH  + Y AGMQP TA  +   +   ++VLD F G GTV+VE L AG+   +GSD SPL++FVS   T    D+    L+  V+     AA K          G  W    + + D + + SK+ V  E+RD LWF  AVA
Sbjct: 1346 SQGDQTIAERLERALEYQWLYGYPRVPDYEKQLTHGAYKYMAGMQPMTAREIYSLIPESKTVLDTFCGSGTVLVEGLVAGKQKCIGSDTSPLAIFVSTHHT----DAHRLSLKNFVQEAENVAADK----------GLGW----TSLRDRIRSISKESVTPELRDGLWFAFAVA 1501          
BLAST of mRNA_Ecto-sp13_S_contig10660.609.1 vs. uniprot
Match: A0A812SXJ5_9DINO (Site-specific DNA-methyltransferase (cytosine-N(4)-specific) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812SXJ5_9DINO)

HSP 1 Score: 102 bits (255), Expect = 5.400e-21
Identity = 66/174 (37.93%), Postives = 89/174 (51.15%), Query Frame = 1
Query:  214 SQGAPEIRDALEEGLRLQWSFGFPYTPKELPVLTHPFFPYPAGMQPSTAHHLLETVLTGRSVLDPFVGGGTVIVEALRAGRLG-VGSDVSPLSLFVSRGRTWIASDSELEELREAVRSVCEAAAAKLGETHTRQVSGKDWDCIESEIADYLAARSKDGVKDEIRDALWFVLAVA 732
            SQG   I + LE  L  QW +G+P  P     LTH  + Y AGMQP TA  +   +   +++LD F G GTV+VE L AG+   +GSD SPL++FVS   T    D+    L+  V    + AA K          G  W    + + D + + SK+ V  E+RD LWF  AVA
Sbjct:  443 SQGDQTIAERLERALEYQWLYGYPRVPDYEKQLTHGAYKYMAGMQPMTAREIYSLIPESKTLLDTFCGSGTVLVEGLVAGKQKCIGSDTSPLAIFVSTHHT----DAHRLSLKNFVEEAEKVAADK----------GLGW----TSLRDRIRSMSKESVTPELRDGLWFAFAVA 598          
BLAST of mRNA_Ecto-sp13_S_contig10660.609.1 vs. uniprot
Match: A0A7S4UV77_9DINO (Site-specific DNA-methyltransferase (cytosine-N(4)-specific) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4UV77_9DINO)

HSP 1 Score: 100 bits (250), Expect = 7.830e-21
Identity = 67/178 (37.64%), Postives = 88/178 (49.44%), Query Frame = 1
Query:  214 SQGAPEIRDALEEGLRLQWSFGFPYTPKELPVLTHPFFPYPAGMQPSTAHHLLETVLTGRSVLDPFVGGGTVIVEALRAGRLGVGSDVSPLSLFVSRGRTWIASDSELEELREAVRSVCEAAAAKLGETHTRQVSGKDWDCIESEIADYLAARSKDGVKDEIRDALWFVLAVARPKAA 747
            S+G   + + LE  L  QW +G+P  P +   LTH  F Y AGMQP TA  +L+     R VLDPF G GTV++EAL AG+  VG D SPL++F +     +A     E L     S  E AA+ L      +   +DW  +   IA      + +        ALWF LAVA   AA
Sbjct:   22 SEGDVRVAEHLERALEYQWVYGYPRVPPDELQLTHGTFKYLAGMQPLTAREMLKLAPNARRVLDPFCGSGTVLIEALVAGKEAVGCDASPLAIFAATHHCDVAGVDTQELL-----STAEGAASDL------ERGEEDWQTLRERIASIPVGPTCE--------ALWFCLAVALHTAA 180          
BLAST of mRNA_Ecto-sp13_S_contig10660.609.1 vs. uniprot
Match: A0A812J3M1_9DINO (Site-specific DNA-methyltransferase (cytosine-N(4)-specific) n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812J3M1_9DINO)

HSP 1 Score: 101 bits (252), Expect = 1.640e-20
Identity = 66/174 (37.93%), Postives = 89/174 (51.15%), Query Frame = 1
Query:  214 SQGAPEIRDALEEGLRLQWSFGFPYTPKELPVLTHPFFPYPAGMQPSTAHHLLETVLTGRSVLDPFVGGGTVIVEALRAGRLG-VGSDVSPLSLFVSRGRTWIASDSELEELREAVRSVCEAAAAKLGETHTRQVSGKDWDCIESEIADYLAARSKDGVKDEIRDALWFVLAVA 732
            SQG     + LE  L  QW +G+P  P     LTH  + Y AGMQP TA  +   +   ++VLD F G GTV+VE L AG+   +GSD SPL++FVS   T    D+    L+  V    + AA K          G  W    + + D + + S++GV  E+RD LWF  AVA
Sbjct:  440 SQGDETTAEHLERALEYQWLYGYPRVPDYEKQLTHGAYKYMAGMQPMTAREIYRLIPESKTVLDTFCGSGTVLVEGLVAGKQKCIGSDTSPLAIFVSTHHT----DAHRLSLKSFVEEAEKVAADK----------GLGW----TSLRDRIRSISQEGVTPELRDGLWFAFAVA 595          
BLAST of mRNA_Ecto-sp13_S_contig10660.609.1 vs. uniprot
Match: C1N5M4_MICPC (Site-specific DNA-methyltransferase (cytosine-N(4)-specific) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N5M4_MICPC)

HSP 1 Score: 99.8 bits (247), Expect = 5.320e-20
Identity = 56/128 (43.75%), Postives = 74/128 (57.81%), Query Frame = 1
Query:  220 GAPEIRDALEEGLRLQWSFGFPYTPKELPVLTHPFFPYPAGMQPSTAHHLLETVLTGRSVLDPFVGGGTVIVEALRAGRLGVGSDVSPLSLFVSRGRTWIAS--DSELEELREAVRSVCEAAAAKLGE 597
            G  ++   L   +R+QW+ G+P TP+  P LTH F  YPAGMQ + A   LE  L GR++LDPF GGGT +V  +  GR   G DVSPL+  V+  R W  S  D+ L  +R+A R+V E      GE
Sbjct:  113 GPKDLSSILLAAMRIQWTHGYPNTPRGYPRLTHGFHEYPAGMQAAAASKALEA-LPGRALLDPFAGGGTTLVVGMADGRATKGVDVSPLACAVAAHRAWRPSGGDATLALMRDAARAVVERMDVTAGE 239          
BLAST of mRNA_Ecto-sp13_S_contig10660.609.1 vs. uniprot
Match: A0A813ANG3_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A813ANG3_9DINO)

HSP 1 Score: 93.2 bits (230), Expect = 1.450e-18
Identity = 63/169 (37.28%), Postives = 84/169 (49.70%), Query Frame = 1
Query:  229 EIRDALEEGLRLQWSFGFPYTPKELPVLTHPFFPYPAGMQPSTAHHLLETVLTGRSVLDPFVGGGTVIVEALRAGRLGVGSDVSPLSLFVSRGRTWIASDSELEELREAVRSVCEAAAAKLGETHTRQVSGKDWDCIESEIA-DYLAARSKDGVKDEIRDALWFVLAVA 732
            E+ + +   LR QW +G+P  P+    LTH FF Y A MQ   A  LL    +  +VLDPF G GTV++EA  AG+   GSD SPL+ FV+R  T +   S LEELR   R++                        E E++ D L  R +   +D +  ALWF L VA
Sbjct:    3 ELTEPMANALRFQWLYGYPGVPEGQDQLTHGFFKYFASMQAMAARQLLWLNPSASTVLDPFCGSGTVLIEAALAGKAATGSDASPLAAFVARHHTDVERIS-LEELRAQARALAP----------------------EKELSWDDLRGRLRALKEDPVTSALWFCLLVA 148          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10660.609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJI9_ECTSI3.040e-15190.20Site-specific DNA-methyltransferase (cytosine-N(4)... [more]
A0A836CR36_9STRA1.680e-3840.00Site-specific DNA-methyltransferase (cytosine-N(4)... [more]
A0A7S2G0U6_9EUKA6.100e-2440.00Site-specific DNA-methyltransferase (cytosine-N(4)... [more]
A0A812IMW5_SYMPI1.380e-2239.89Site-specific DNA-methyltransferase (cytosine-N(4)... [more]
A0A1Q9CXJ7_SYMMI4.880e-2138.51Site-specific DNA-methyltransferase (cytosine-N(4)... [more]
A0A812SXJ5_9DINO5.400e-2137.93Site-specific DNA-methyltransferase (cytosine-N(4)... [more]
A0A7S4UV77_9DINO7.830e-2137.64Site-specific DNA-methyltransferase (cytosine-N(4)... [more]
A0A812J3M1_9DINO1.640e-2037.93Site-specific DNA-methyltransferase (cytosine-N(4)... [more]
C1N5M4_MICPC5.320e-2043.75Site-specific DNA-methyltransferase (cytosine-N(4)... [more]
A0A813ANG3_9DINO1.450e-1837.28Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10660contigEcto-sp13_S_contig10660:2870..5585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score443.0
Seed ortholog evalue1e-121
Seed eggNOG ortholog2880.D7FJI9
Model size825
Hectar predicted targeting categorymitochondrion
Exons7
EggNOG OGs2EAWQ@1,2SH33@2759
Cds size825
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10660.609.1prot_Ecto-sp13_S_contig10660.609.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10660 2870..5585 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462545.1655164-CDS-Ecto-sp13_S_contig10660:2869..29521681462545.1655164-CDS-Ecto-sp13_S_contig10660:2869..2952Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10660 2870..2952 +
1681462545.1775954-CDS-Ecto-sp13_S_contig10660:3555..36211681462545.1775954-CDS-Ecto-sp13_S_contig10660:3555..3621Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10660 3556..3621 +
1681462545.186239-CDS-Ecto-sp13_S_contig10660:3802..38181681462545.186239-CDS-Ecto-sp13_S_contig10660:3802..3818Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10660 3803..3818 +
1681462545.1951876-CDS-Ecto-sp13_S_contig10660:3965..40971681462545.1951876-CDS-Ecto-sp13_S_contig10660:3965..4097Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10660 3966..4097 +
1681462545.2041483-CDS-Ecto-sp13_S_contig10660:4419..45251681462545.2041483-CDS-Ecto-sp13_S_contig10660:4419..4525Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10660 4420..4525 +
1681462545.2140965-CDS-Ecto-sp13_S_contig10660:4861..50101681462545.2140965-CDS-Ecto-sp13_S_contig10660:4861..5010Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10660 4862..5010 +
1681462545.22368-CDS-Ecto-sp13_S_contig10660:5312..55851681462545.22368-CDS-Ecto-sp13_S_contig10660:5312..5585Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10660 5313..5585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10660.609.1

>prot_Ecto-sp13_S_contig10660.609.1 ID=prot_Ecto-sp13_S_contig10660.609.1|Name=mRNA_Ecto-sp13_S_contig10660.609.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=275bp
MSSSHGVFRIFAAGRRALSTMLQQQASTCFVPSVPAPVCTFGICVSHQPS
SKMNTEYRYETMLTSGSVLAESQGAPEIRDALEEGLRLQWSFGFPYTPKE
LPVLTHPFFPYPAGMQPSTAHHLLETVLTGRSVLDPFVGGGTVIVEALRA
GRLGVGSDVSPLSLFVSRGRTWIASDSELEELREAVRSVCEAAAAKLGET
HTRQVSGKDWDCIESEIADYLAARSKDGVKDEIRDALWFVLAVARPKAAT
KRRRGVEHVVACEVFHTVRPISFR*
back to top

mRNA from alignment at Ecto-sp13_S_contig10660:2870..5585+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10660.609.1 ID=mRNA_Ecto-sp13_S_contig10660.609.1|Name=mRNA_Ecto-sp13_S_contig10660.609.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2716bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10660:2870..5585+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTTCTTCTCATGGGGTTTTCCGAATCTTTGCAGCAGGCAGACGAGC TCTTTCGACGATGCTGCAGCAGCAGGCGAGTACGTGATGCATCAGCAGTA CATAGGTGAAACCCAGAATGCTTTTGACTTTTGTTGTTTTCACTAGTTCA AAAGCACAGCTACTGGTACATGTGTATTATCTGCAAGTATCTACAGCAGT ATTGTACGTATGTACTGCTGTAGTCTCGACGGTCACCGTTCCGCAAACGA AATCAACACCCTGAAATACCATCCCCTCCGCGCCACCCCCATGGCTGCCG CCAAGTCAAGGCCATAAAAAAAAAATCACTTCAGTACCACCAGGTGCAGT AGCCTCCATGCAAGCACCTGTATTTCTACAGAGGGCGGAGGGGTGAGGTT TGCCACCCCGCCAGCAGGCAAAACCCGCGTGTGTCGGGTATTTTCTGCGC GTACTGTGTGGTACACTGTTTACTGTGTGGCTGGCATTCACCACCCGAGG ACTCGTCCCTAACTTGGTTTGAATATATGTACATGTAGCAACACGTGGTT TGGTGAGAATAAATGCCGGAAACAAATTGTTACTAAGATGCATCAGCACT CCATGACACACGATGAATTACCATAGTCTTCTAGTCTAGATTTCCAAAGT GTACCCCACACAATGTTCGAGCCGAAAGGTCCAGAGTTGTTTCGTCCCAT CGGTTCCGGCGCCAGTGTGCACCTTCGGTATATGCGTCTCACACCAGCCG AGGTCACACAAGAGAAAGCTGCGATGCTTGCTTTACTAGTAGAGTGTTTT CATGTTTTGAACGCGCGCAGGAAGGGTTAAGCAGATCCATCCCTCAAGTT GTGGTTACTCGCACTACCTGTGCATGCTCTCACCGACTTTTTCAATTTTT CTCCCCTGAGAGATTCGAACCGACAACCCAGAGCTCCAAAATGAACACCG TTGGAACTGCACCGTGGTCGAGATCGGCTCCCAAAGTTCCGTTCTGGGGG GGTGGGGGTGACATCATTTAACCCTCCGCAAGCCGCTTCCAGCGACAATG TATATCATCACATGCCCCTATGAAAATTTTTGTTCGTCTATTGCAGGAAT ATCGGTACGAAACCATGCTCACATCAGGCTCGGTGCTGGCAGAAAGTCAG GGCGCGCCAGAGATCAGAGATGCACTTGAGGAGGGGTTGAGGCTGCAGTG GTCTTTTGGCTTTCCCTACACGCCGAAGGTGAATGCTTCGAGTTTCGCTA CTTTTTTTTCTGAGGACTCTCGAGACGATCGTCAGAGTTGTCAAGAGTTT AAAGGCTGACGCGACACACTCACGAAAGCGACACCATTCACTCTTGTATG GAAGAATGGATGCTTGACGGCGGTTCCACGTAGACAAGGGAAGATCATGA GCCGCCCGTGTGGCCAACTTTAGATTACCCATCGCTCTTTGGCCAGTGTA CCGTGAGGCCACACCAGGCTCTACCCGTAAACGATAGGCACTGATTTGCC CATGCTTCTCCACCATGCTCTCCCATACTTCCCCTGATACGCATACACAG GAATTACCTGTTCTTACTCATCCTTTTTTCCCGTATCCGGCGGGCATGCA GCCGTCTACTGCGCATCATCTTCTAGAGACCGTATTGACGGGAAGATCTG TACTAGGTGAGAGACATGACAATCTTTCGCCGCGCAAATGGCCAGCATGG TAGTTTCCCTGCTGAAAGGCTTCCTGATCGCTTCCACGCAGGCGTTGTGG CCAAGGTTGCGACCGTCATAGGCACTCACCATTTACAGCAGGGACACTGG AGCAGCATAATTTACACCCGGCTTTGTATCACCAGTATCGGTTCCACCTT CCAGGGTCCTGGCACAGGATGATCAAGTCCCGTATCCACCTGGCTTCTTC TGGTCCGTACTGTGTTGCCTTCGCCATACACTCATGCCTGTATAAACACC AATTGTCTGCGTTGCGTCTTGCGTCTTGTGTCTTGCGTACAGATCCCTTC GTGGGCGGCGGTACGGTGATCGTTGAAGCTCTGCGCGCTGGTCGCCTCGG GGTTGGGTCGGATGTCTCACCCTTGAGTCTGTTCGTGTCAAGAGGGAGAA CTTGGATTGCGTCTGACAGTGAGTTGGAGGAGCTACGCGAGGTACGCCAT GCGATCGATGTCGCTCGTGTAAGCTCCGCTTTACCCTTGCGGCTTCTTTA GGTTGCATGAGAAGACTTTATGCCCTGCGCGTTCCCCAATGGGTAGCTTT TAGTTTGCCAACTTGTTGGCCCTTAGTGTGGCACATTACCGAATACTTTG AGATGATCTTGATGCATCGGGGGGGCGAGCGCGATGGGCCGCTTACGGTC GGGTGGAAATGGGGGTTCTCCCCGACACAACTATCTTTTTTTCATGATTG ACTTGCTTCCCATTCCCCACCTCCCTCCTGGACTGCGGCGAAGGCCGTGC GGTCTGTTTGCGAAGCTGCTGCGGCTAAGCTTGGGGAGACGCACACCCGC CAGGTATCCGGCAAGGACTGGGATTGTATCGAGTCCGAGATTGCCGACTA CTTGGCGGCCAGGTCCAAGGATGGGGTGAAGGATGAGATAAGGGATGCGC TCTGGTTCGTCTTGGCGGTGGCGCGGCCGAAAGCAGCAACCAAGCGGCGG CGTGGCGTTGAACATGTCGTGGCCTGCGAAGTTTTTCACACGGTGAGGCC CATTTCTTTTAGGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10660:2870..5585+

>mRNA_Ecto-sp13_S_contig10660.609.1 ID=mRNA_Ecto-sp13_S_contig10660.609.1|Name=mRNA_Ecto-sp13_S_contig10660.609.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10660:2870..5585+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTTCTTCTCATGGGGTTTTCCGAATCTTTGCAGCAGGCAGACGAGC
TCTTTCGACGATGCTGCAGCAGCAGGCGAGTACTTGTTTCGTCCCATCGG
TTCCGGCGCCAGTGTGCACCTTCGGTATATGCGTCTCACACCAGCCGAGC
TCCAAAATGAACACCGAATATCGGTACGAAACCATGCTCACATCAGGCTC
GGTGCTGGCAGAAAGTCAGGGCGCGCCAGAGATCAGAGATGCACTTGAGG
AGGGGTTGAGGCTGCAGTGGTCTTTTGGCTTTCCCTACACGCCGAAGGAA
TTACCTGTTCTTACTCATCCTTTTTTCCCGTATCCGGCGGGCATGCAGCC
GTCTACTGCGCATCATCTTCTAGAGACCGTATTGACGGGAAGATCTGTAC
TAGATCCCTTCGTGGGCGGCGGTACGGTGATCGTTGAAGCTCTGCGCGCT
GGTCGCCTCGGGGTTGGGTCGGATGTCTCACCCTTGAGTCTGTTCGTGTC
AAGAGGGAGAACTTGGATTGCGTCTGACAGTGAGTTGGAGGAGCTACGCG
AGGCCGTGCGGTCTGTTTGCGAAGCTGCTGCGGCTAAGCTTGGGGAGACG
CACACCCGCCAGGTATCCGGCAAGGACTGGGATTGTATCGAGTCCGAGAT
TGCCGACTACTTGGCGGCCAGGTCCAAGGATGGGGTGAAGGATGAGATAA
GGGATGCGCTCTGGTTCGTCTTGGCGGTGGCGCGGCCGAAAGCAGCAACC
AAGCGGCGGCGTGGCGTTGAACATGTCGTGGCCTGCGAAGTTTTTCACAC
GGTGAGGCCCATTTCTTTTAGGTAA
back to top