mRNA_Ecto-sp13_S_contig10655.603.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10655.603.1 vs. uniprot
Match: D7FVF6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVF6_ECTSI) HSP 1 Score: 520 bits (1339), Expect = 7.890e-184 Identity = 274/310 (88.39%), Postives = 282/310 (90.97%), Query Frame = 1
Query: 1 MQRGRQIALVRSESTRSSTAAAETPSARQGGSNRFGAANDGEELPAWNRQVSFRGQPYRYAHHQNGVMGHFQVRVVAASEIAEPDWSRVTSNLNINVIAGGGSGTGSALPYVAVSLGKYIVRSSAQEAQPDSLGTLRASWPRETLSVEVMKGGIRPGEVPRLAVQVYNQDSIVQSVLSSAVSRVMGSRGSLLGVGELDVSSLLSGGAHLIDTWVELEPKGRVHVHVEYEPKGIQPEKNDVVFLESFARWGDSLVIPPGVPMVVLDCKPPFLLVAFDTFTGREGRLRLHRNTVSVVERLSWLDVSLAMLAR 930
MQRG RSESTRSSTAA E PSARQGGSNR+GAA D EE+PAW RQ+SFRGQPYRYAHHQNGVMGHFQ+RVVAASEI+EPDWSRVTSNLNIN I SALPYVAVSLGK VRSSA+EAQPDSLGTLRASWPR LSVEVMKG IRPGE+PRLAVQVYNQDSIVQSVLSSAVS VMGSRGSLLG GELDVSSLLSGGAHLIDTWVELEPKGRVHVHVEYEPKGIQPEKNDVVFLESFARWGDSLVIPPGVPMVVLD KPPFLLVAFDTFTGREGRLRLHRNTVS+VERLSWLDVSLAMLAR
Sbjct: 1 MQRGCSAGPNRSESTRSSTAA-EAPSARQGGSNRYGAAED-EEVPAWKRQLSFRGQPYRYAHHQNGVMGHFQIRVVAASEISEPDWSRVTSNLNINAIXXXXXXXXSALPYVAVSLGKCTVRSSAREAQPDSLGTLRASWPRGMLSVEVMKGDIRPGELPRLAVQVYNQDSIVQSVLSSAVSTVMGSRGSLLGAGELDVSSLLSGGAHLIDTWVELEPKGRVHVHVEYEPKGIQPEKNDVVFLESFARWGDSLVIPPGVPMVVLDSKPPFLLVAFDTFTGREGRLRLHRNTVSLVERLSWLDVSLAMLAR 308
BLAST of mRNA_Ecto-sp13_S_contig10655.603.1 vs. uniprot
Match: A0A7S1UJC0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJC0_9STRA) HSP 1 Score: 144 bits (362), Expect = 1.670e-36 Identity = 94/305 (30.82%), Postives = 150/305 (49.18%), Query Frame = 1
Query: 109 AANDGEELPAWNRQVSFRGQPYRYAHHQNGVMGHFQVRVVAASEIAEPDWSRV---TSNLNINVIAGGGSGTGSALPYVAVSLGKYIVRSSAQEAQPDSLGTLRAS----WPRETLSVEVMKGGIRPGEVPRLAVQVYNQDSIVQSVLSSAVSRVMGSRGSLLGVGELDVSSLLSGGAHLIDTWVELEP---------KGR----------------------VHVHVEYEPKGIQPEKNDVVFLESFARWGDSLVIPPGVPMVVLDCKPPFLLVAFDT-FTGREGRLRLHRNTVSVVERLSWLD 906
A ++ + P W +S+RG YRY HQ VMG RVV A + DWS + S N+N PYV +S+G + P G +R + W E + V+K +R G L VQ ++ +++V VL + ++ + LG+G++++S+LL G A ++D WV L+ KG VH+ VEYEP+G+ P++ D+V+LE FAR + +IPPG PM V++ + LV F + ++ + +L++HRN + VVERL+ +D
Sbjct: 13 ATDEDQPAPRWVSNMSYRGNAYRYLDHQQNVMGTVHARVVEAKNLRRLDWSYLQPLASAQNVN-------------PYVKLSMG-----GDEEIRMPICTGVVRGNCNPTWVSEKFILPVLKSAVRSGIAVTLDVQAFHSENVVARVLPNMITG-----NNSLGLGQVELSALLLGEAQVLDVWVPLQTGAHSKVKGGKGEESKDEPRPGAPLQPVVDEFAPAVHIVVEYEPEGLHPQRGDIVYLEPFARSPVNQIIPPGEPMAVIEMSGSYALVGFQSGYSEFKCQLKIHRNAIFVVERLTLVD 294
BLAST of mRNA_Ecto-sp13_S_contig10655.603.1 vs. uniprot
Match: W7TJW2_9STRA (C2 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJW2_9STRA) HSP 1 Score: 132 bits (331), Expect = 1.930e-32 Identity = 94/275 (34.18%), Postives = 140/275 (50.91%), Query Frame = 1
Query: 127 ELPAWNRQVSFRGQPYRYAHHQNGVMGHFQVRVVAASEIAEPDWSRVTSNLNINVIAGGGSGTGSALPYVAVSLGKYIVRSSAQEAQPDSLG-TLRASWPRETLSVEVMKGGIRPGEVPRLAVQVYNQDSIVQSVLSSAVSRVMGSRGSLLGVGELDVSSLLSG--GAHLIDTWVELEP-KGRVHVHVEYEPKGIQPEKNDVVFLESFARWGDSLVIPPGVPMVVLDCKPPFLLVAFDTFTGREGR---------LRLHRNTVSVVERLSWLDVS 912
+ P W +++ R PYRY HQ G +G +R++ ++ +G G + +VS + ++R A+EA+ + SW +E ++ + KG ++ G + Q + +S S + GS+G LG G LD+ LL+G G+H++D WV L P GR+HV VEYEP G+ PE +DVVF E+FAR SLV+P PMVV +LLV F T T R+ R LR+HR TV V+ER + LD +
Sbjct: 13 DAPIWRPEMAVRQNPYRYLDHQKGTIGILDIRLIDGRDLDS-------------------TGRGESGRSASVSP-QVVIRVPAEEARSSVVPRNAHPSW-QERFTMNLKKGVLQEGAPVLVVFQALDA--------ASWRSPLGGSKGRDLGSGSLDILPLLNGSRGSHVMDEWVSLSPGPGRLHVVVEYEPVGMVPEMDDVVFFEAFARSPRSLVLPTNEPMVVRAVSGAYLLVGFRTPTARQARGPEAAPECRLRVHRQTVFVIERHTLLDAA 258
BLAST of mRNA_Ecto-sp13_S_contig10655.603.1 vs. uniprot
Match: A0A1E7FW16_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FW16_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 9.690e-9 Identity = 37/108 (34.26%), Postives = 58/108 (53.70%), Query Frame = 1
Query: 658 GRVHVHVEYEPKGIQPEKNDVVFLESFARWGDSL-----VIPPGVPMVVLDCKPPFLLVAF-----------------DTFTGREGRLRLHRNTVSVVERLSWLDVSL 915
GRV V + Y P G+ P++ND+V LE+FAR +IPP +P+ V+D K P+LLV + + R+ +R+HRN V V+ER + +D ++
Sbjct: 274 GRVRVLITYHPHGMNPQRNDIVALEAFARQNLRTATCHSIIPPFLPLHVIDVKEPWLLVKYRLPFETDNNNMYNHGMNENDDDRKACMRIHRNAVFVIERKNLMDAAM 381
BLAST of mRNA_Ecto-sp13_S_contig10655.603.1 vs. uniprot
Match: A0A7S1D990_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D990_CYCTE) HSP 1 Score: 52.4 bits (124), Expect = 8.400e-5 Identity = 27/85 (31.76%), Postives = 45/85 (52.94%), Query Frame = 1
Query: 139 WNRQVSFRGQPYRYAHHQNGVMGHFQVRVVAASEIAEPDWSRVTSNLNINVIAGGGSGTGSALPYVAVSLGKYIVRSSAQEAQPD 393
W+++ +FR PYR HHQ G++GHF+V+++ AS + WS + ++ G SA + + L I S E++PD
Sbjct: 31 WSQKYAFRDSPYRLLHHQKGLIGHFRVQLLEASNLERSYWSALAIGPVKHLGLSKAHGAVSACCTIGLGLTSPIDESDKLESKPD 115 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10655.603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10655.603.1 >prot_Ecto-sp13_S_contig10655.603.1 ID=prot_Ecto-sp13_S_contig10655.603.1|Name=mRNA_Ecto-sp13_S_contig10655.603.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=311bp MQRGRQIALVRSESTRSSTAAAETPSARQGGSNRFGAANDGEELPAWNRQback to top mRNA from alignment at Ecto-sp13_S_contig10655:717..5308+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10655.603.1 ID=mRNA_Ecto-sp13_S_contig10655.603.1|Name=mRNA_Ecto-sp13_S_contig10655.603.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4592bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10655:717..5308+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10655:717..5308+ >mRNA_Ecto-sp13_S_contig10655.603.1 ID=mRNA_Ecto-sp13_S_contig10655.603.1|Name=mRNA_Ecto-sp13_S_contig10655.603.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=933bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10655:717..5308+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |