mRNA_Ecto-sp13_S_contig10651.600.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10651.600.1
Unique NamemRNA_Ecto-sp13_S_contig10651.600.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10651.600.1 vs. uniprot
Match: A0A6H5KVS2_9PHAE (MABP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVS2_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 4.910e-20
Identity = 79/97 (81.44%), Postives = 81/97 (83.51%), Query Frame = 1 
Query:   28 GAENNAGQHRTGNSTSSTDVSSSSLVKPSPSYRRDXXXXXXXXXXXXXXXXXXXXXLGTNGDYSPVPNGGGAGEGEGASFFPGWSVPTSSTFPGAGP 318
            GAE+NAGQHRTGNST+S       LVKPSPS  R XXXXXXXXXXXXXXXXXXXX LGTN DYSPVPNGG  GE EGASFFPGWSVPTSSTF GAGP
Sbjct:  137 GAESNAGQHRTGNSTNS-------LVKPSPS-NRXXXXXXXXXXXXXXXXXXXXXGLGTNADYSPVPNGGVGGEKEGASFFPGWSVPTSSTFSGAGP 225
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10651.600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVS2_9PHAE4.910e-2081.44MABP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10651contigEcto-sp13_S_contig10651:1219..1544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size328
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462544.4900992-CDS-Ecto-sp13_S_contig10651:1218..15421681462544.4900992-CDS-Ecto-sp13_S_contig10651:1218..1542Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10651 1219..1542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10651.600.1prot_Ecto-sp13_S_contig10651.600.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10651 1219..1542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10651.600.1

>prot_Ecto-sp13_S_contig10651.600.1 ID=prot_Ecto-sp13_S_contig10651.600.1|Name=mRNA_Ecto-sp13_S_contig10651.600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
ATAAAAAARGAENNAGQHRTGNSTSSTDVSSSSLVKPSPSYRRDAAATAA
VAAAAAGIASSGGGGLGTNGDYSPVPNGGGAGEGEGASFFPGWSVPTSST
FPGAGPEG
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mRNA from alignment at Ecto-sp13_S_contig10651:1219..1544+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10651.600.1 ID=mRNA_Ecto-sp13_S_contig10651.600.1|Name=mRNA_Ecto-sp13_S_contig10651.600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=326bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10651:1219..1544+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGACGGCAGCGGCGGCCGCGGCTCGAGGCGCAGAGAACAACGCCGGGCA
GCACAGAACCGGCAATAGCACGAGCTCGACGGACGTATCCTCGAGCTCCC
TCGTGAAGCCCTCTCCCTCTTACCGACGGGACGCCGCCGCCACCGCTGCC
GTAGCAGCAGCAGCAGCAGGAATCGCTTCTAGCGGCGGCGGTGGCCTGGG
CACCAACGGCGATTATTCTCCGGTGCCCAACGGCGGCGGTGCCGGCGAAG
GAGAAGGAGCTTCTTTTTTCCCGGGTTGGTCGGTGCCGACAAGCTCCACC
TTCCCCGGCGCTGGCCCCGAGGGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10651:1219..1544+

>mRNA_Ecto-sp13_S_contig10651.600.1 ID=mRNA_Ecto-sp13_S_contig10651.600.1|Name=mRNA_Ecto-sp13_S_contig10651.600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10651:1219..1544+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGACGGCAGCGGCGGCCGCGGCTCGAGGCGCAGAGAACAACGCCGGGCA
GCACAGAACCGGCAATAGCACGAGCTCGACGGACGTATCCTCGAGCTCCC
TCGTGAAGCCCTCTCCCTCTTACCGACGGGACGCCGCCGCCACCGCTGCC
GTAGCAGCAGCAGCAGCAGGAATCGCTTCTAGCGGCGGCGGTGGCCTGGG
CACCAACGGCGATTATTCTCCGGTGCCCAACGGCGGCGGTGCCGGCGAAG
GAGAAGGAGCTTCTTTTTTCCCGGGTTGGTCGGTGCCGACAAGCTCCACC
TTCCCCGGCGCTGGCCCCGAGGGA
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