mRNA_Ecto-sp13_S_contig10650.599.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10650.599.1
Unique NamemRNA_Ecto-sp13_S_contig10650.599.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10650.599.1 vs. uniprot
Match: A0A6H5L4Y0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y0_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 3.010e-52
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 1 
Query:    1 AAAGAVISCFVALRGAANFPAMALLWALYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPWLSLSRFPAGSPSSPVCVWGYRWLLFRIMVS 273
            AA GAV+SCFVALRGAANFPAMALLWALYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPWLSLSRFPAGSP+SPVCVWGYRWLLFRIM+ 
Sbjct:   96 AATGAVVSCFVALRGAANFPAMALLWALYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPWLSLSRFPAGSPTSPVCVWGYRWLLFRIMLG 186
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BLAST of mRNA_Ecto-sp13_S_contig10650.599.1 vs. uniprot
Match: D7G290_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G290_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 8.270e-52
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 1 
Query:    1 AAAGAVISCFVALRGAANFPAMALLWALYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPWLSLSRFPAGSPSSPVCVWGYRWLLFRIMVS 273
            AA GA +SCFVALRGAANFPAMALLWALYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPWLSLSRFPAGSP+SPVCVWGYRWLLFRIM+ 
Sbjct:   55 AATGAAVSCFVALRGAANFPAMALLWALYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPWLSLSRFPAGSPTSPVCVWGYRWLLFRIMLG 145
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BLAST of mRNA_Ecto-sp13_S_contig10650.599.1 vs. uniprot
Match: UPI0007EE31AB (lipase maturation factor 1 n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=UPI0007EE31AB)

HSP 1 Score: 120 bits (301), Expect = 2.800e-33
Identity = 56/88 (63.64%), Postives = 68/88 (77.27%), Query Frame = 1 
Query:   10 GAVISCFVALRGAANFPAMALLWALYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPWLSLSRFPAGSPSSPVCVWGYRWLLFRIMVS 273
            G  IS FV + G AN   MA LWALY SLVNVGQ WYSFGWESQLLETGFLA+FL P  +L+R P+ +P+S + +WG+RWL+FRIM+ 
Sbjct:   12 GLGISFFVLIAGCANMVLMAALWALYLSLVNVGQVWYSFGWESQLLETGFLAIFLCPLWTLARLPSSTPTSRIVLWGFRWLIFRIMLG 99
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BLAST of mRNA_Ecto-sp13_S_contig10650.599.1 vs. uniprot
Match: UPI00052EBAD9 (lipase maturation factor 1-like n=1 Tax=Tinamus guttatus TaxID=94827 RepID=UPI00052EBAD9)

HSP 1 Score: 122 bits (305), Expect = 1.670e-32
Identity = 57/88 (64.77%), Postives = 67/88 (76.14%), Query Frame = 1 
Query:   10 GAVISCFVALRGAANFPAMALLWALYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPWLSLSRFPAGSPSSPVCVWGYRWLLFRIMVS 273
            G +IS FV + G AN   MALLW LY SLVNVGQ WYSFGWESQLLETGFL +FL P  +LSR P+ +P S + +WG+RWLLFRIM+ 
Sbjct:   68 GLMISAFVLVTGCANMILMALLWILYLSLVNVGQIWYSFGWESQLLETGFLGIFLCPLWTLSRLPSSTPPSRIVIWGFRWLLFRIMLG 155
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BLAST of mRNA_Ecto-sp13_S_contig10650.599.1 vs. uniprot
Match: A0A7F8RAD7_LEPWE (Lipase maturation factor n=1 Tax=Leptonychotes weddellii TaxID=9713 RepID=A0A7F8RAD7_LEPWE)

HSP 1 Score: 119 bits (299), Expect = 2.680e-32
Identity = 58/97 (59.79%), Postives = 69/97 (71.13%), Query Frame = 1 
Query:   10 GAVISCFVALRGAANFPAMALLWALYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPWLSLSRFPAGSPSSPVCVWGYRWLLFRIMV-----SLAVG 285
            G  +S F+ + G AN   MA LW LY SLVNVGQ WYSFGWESQLLETGFL +FL P  +LSR P G+P S + +WG+RWL+FRIM+     SLA G
Sbjct:   74 GLGVSSFILVTGCANIVLMATLWVLYMSLVNVGQIWYSFGWESQLLETGFLGIFLCPLWTLSRLPTGTPPSQIVLWGFRWLIFRIMLGATPRSLASG 170
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BLAST of mRNA_Ecto-sp13_S_contig10650.599.1 vs. uniprot
Match: UPI0009054FFC (lipase maturation factor 1-like n=1 Tax=Aptenodytes forsteri TaxID=9233 RepID=UPI0009054FFC)

HSP 1 Score: 117 bits (293), Expect = 5.660e-32
Identity = 54/88 (61.36%), Postives = 64/88 (72.73%), Query Frame = 1 
Query:   10 GAVISCFVALRGAANFPAMALLWALYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPWLSLSRFPAGSPSSPVCVWGYRWLLFRIMVS 273
            G   S FV + G AN   MA+LW LY SLVNVGQ WYSFGWESQLLETGFL +FL P  +LSR P  +P S + +WG+RWL+FRIM+ 
Sbjct:   12 GLATSAFVLVTGCANMVLMAVLWVLYLSLVNVGQIWYSFGWESQLLETGFLGIFLCPLWTLSRLPQHTPPSSIVIWGFRWLIFRIMLG 99
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BLAST of mRNA_Ecto-sp13_S_contig10650.599.1 vs. uniprot
Match: A0A8D2DVT9_SCIVU (Lipase maturation factor n=3 Tax=Sciurini TaxID=337752 RepID=A0A8D2DVT9_SCIVU)

HSP 1 Score: 125 bits (315), Expect = 8.770e-32
Identity = 57/88 (64.77%), Postives = 67/88 (76.14%), Query Frame = 1 
Query:   10 GAVISCFVALRGAANFPAMALLWALYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPWLSLSRFPAGSPSSPVCVWGYRWLLFRIMVS 273
            G  ISCFV + G AN   MA LW LY SLVNVGQ WYSFGWESQLLETGFL +FL PW +LSR P  +P+S + +WG+RWL+FRIM+ 
Sbjct:  131 GLGISCFVLITGCANMILMAALWGLYLSLVNVGQVWYSFGWESQLLETGFLGIFLCPWWTLSRLPQHTPTSRIVLWGFRWLIFRIMLG 218
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BLAST of mRNA_Ecto-sp13_S_contig10650.599.1 vs. uniprot
Match: UPI00074FB6C1 (lipase maturation factor 1-like n=1 Tax=Gekko japonicus TaxID=146911 RepID=UPI00074FB6C1)

HSP 1 Score: 117 bits (293), Expect = 1.350e-31
Identity = 54/91 (59.34%), Postives = 66/91 (72.53%), Query Frame = 1 
Query:    1 AAAGAVISCFVALRGAANFPAMALLWALYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPWLSLSRFPAGSPSSPVCVWGYRWLLFRIMVS 273
            A AG  I+ FV + G AN   M  LWALY SL+NVGQ WYSFGWESQLLETGFL +FL P+ + S+ P  +P S + +WGYRWL+FRIM+ 
Sbjct:   65 ALAGLAIAAFVLVTGCANMVLMTALWALYLSLINVGQIWYSFGWESQLLETGFLGIFLCPFWTFSQLPKRTPPSRIVIWGYRWLIFRIMLG 155
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BLAST of mRNA_Ecto-sp13_S_contig10650.599.1 vs. uniprot
Match: A0A482ST57_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482ST57_9ARCH)

HSP 1 Score: 115 bits (288), Expect = 2.900e-31
Identity = 51/79 (64.56%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:   37 LRGAANFPAMALLWALYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPWLSLSRFPAGSPSSPVCVWGYRWLLFRIMVS 273
            L G AN   +  LWALY S+VN+GQTWYSFGWESQLLE GF+A+F+VP+LSL ++P  +P+S V VWG RWLLFRIM+ 
Sbjct:    2 LFGVANVAVLFFLWALYFSIVNIGQTWYSFGWESQLLEVGFMALFMVPFLSLQKYPKLTPTSWVAVWGNRWLLFRIMIG 80
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BLAST of mRNA_Ecto-sp13_S_contig10650.599.1 vs. uniprot
Match: UPI000C6E988A (lipase maturation factor 1-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6E988A)

HSP 1 Score: 122 bits (306), Expect = 3.270e-31
Identity = 55/88 (62.50%), Postives = 64/88 (72.73%), Query Frame = 1 
Query:   10 GAVISCFVALRGAANFPAMALLWALYHSLVNVGQTWYSFGWESQLLETGFLAMFLVPWLSLSRFPAGSPSSPVCVWGYRWLLFRIMVS 273
            G VIS  + + G +N  AM  LW LYHS+VNVGQ WYSFGWESQLLETGFLA+F  P  +  R P  +P SP+ VWGYRWLLFRIM+ 
Sbjct:  129 GLVISLLITVTGCSNMIAMITLWILYHSIVNVGQRWYSFGWESQLLETGFLAIFFCPLWTWKRLPRNTPPSPIVVWGYRWLLFRIMIG 216
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10650.599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4Y0_9PHAE3.010e-5294.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G290_ECTSI8.270e-5293.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI0007EE31AB2.800e-3363.64lipase maturation factor 1 n=1 Tax=Oryctolagus cun... [more]
UPI00052EBAD91.670e-3264.77lipase maturation factor 1-like n=1 Tax=Tinamus gu... [more]
A0A7F8RAD7_LEPWE2.680e-3259.79Lipase maturation factor n=1 Tax=Leptonychotes wed... [more]
UPI0009054FFC5.660e-3261.36lipase maturation factor 1-like n=1 Tax=Aptenodyte... [more]
A0A8D2DVT9_SCIVU8.770e-3264.77Lipase maturation factor n=3 Tax=Sciurini TaxID=33... [more]
UPI00074FB6C11.350e-3159.34lipase maturation factor 1-like n=1 Tax=Gekko japo... [more]
A0A482ST57_9ARCH2.900e-3164.56Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
UPI000C6E988A3.270e-3162.50lipase maturation factor 1-like n=1 Tax=Centruroid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10650contigEcto-sp13_S_contig10650:4676..5542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score182.2
Seed ortholog evalue1.2e-43
Seed eggNOG ortholog2880.D7G290
Preferred nameLMF1
Model size294
Hectar predicted targeting categorysignal peptide
GOsGO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006807,GO:0006810,GO:0006888,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009306,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0019216,GO:0019218,GO:0019222,GO:0019538,GO:0031323,GO:0031984,GO:0032501,GO:0032940,GO:0033036,GO:0033578,GO:0034381,GO:0034382,GO:0034645,GO:0036211,GO:0042175,GO:0042886,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046486,GO:0046903,GO:0046907,GO:0048193,GO:0050789,GO:0050790,GO:0050794,GO:0051004,GO:0051006,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051604,GO:0051641,GO:0051649,GO:0060191,GO:0060193,GO:0061365,GO:0062012,GO:0065007,GO:0065009,GO:0070085,GO:0071702,GO:0071704,GO:0071705,GO:0071830,GO:0080090,GO:0090181,GO:0090207,GO:0097006,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Exons2
EggNOG free text desc.protein glycosylation in Golgi
EggNOG OGs28KNS@1,2QT4H@2759
Cds size294
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462544.4378245-CDS-Ecto-sp13_S_contig10650:4675..48021681462544.4378245-CDS-Ecto-sp13_S_contig10650:4675..4802Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10650 4676..4802 +
1681462544.4491138-CDS-Ecto-sp13_S_contig10650:5375..55421681462544.4491138-CDS-Ecto-sp13_S_contig10650:5375..5542Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10650 5376..5542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10650.599.1prot_Ecto-sp13_S_contig10650.599.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10650 4676..5542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10650.599.1

>prot_Ecto-sp13_S_contig10650.599.1 ID=prot_Ecto-sp13_S_contig10650.599.1|Name=mRNA_Ecto-sp13_S_contig10650.599.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=98bp
AAAGAVISCFVALRGAANFPAMALLWALYHSLVNVGQTWYSFGWESQLLE
TGFLAMFLVPWLSLSRFPAGSPSSPVCVWGYRWLLFRIMVSLAVGVL*
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mRNA from alignment at Ecto-sp13_S_contig10650:4676..5542+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10650.599.1 ID=mRNA_Ecto-sp13_S_contig10650.599.1|Name=mRNA_Ecto-sp13_S_contig10650.599.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=867bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10650:4676..5542+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGCCGCCGGCGCGGTGATTTCGTGTTTTGTGGCCTTGAGGGGGGCGGC
AAATTTCCCGGCGATGGCTCTGCTCTGGGCGCTTTACCACTCCCTGGTGA
ACGTGGGCCAGACCTGGTATTCGTTCGGTGAGGCTTGTCGGTTTTTGTCG
AAGTACTTCGGGCACGAGACGCTTGTTGTCGTTGTGGGTGGGTGGGTTGT
CGGTGCTGGTGTGGGTGTAGTTTGACAACCTCGGCGTTGTTGTTTGTTGC
CTTGGGTTGTTGATTTTGGCGGTGGTGGCATCTGGATTGGTGCCATAGGC
AGGCTGGTGCTTGTGCTTCGGGTGCGCACCCTAGGGCGTCCGTTTTTTTG
CTAGATTTGTTCCCCGAGTAATTCTTGTCTTCGGCCCTCCCGCGGCAAGT
AGGAAACTTGTGAGAGCCTCAGTTAACATACGCAGAGATCTCACGTACGC
ACGCACCATGCATGCAGGCCTTTTAGATTGGGCGACGGCAAAAATAATCA
CACGCACAAATTTTCAAACTCACTGAGACTGACGTCCTTTCATTGGTCAG
CCGGCTAGTGCTGTTGAAGAAACCACACACGTATTTTTTCATCGGTCAGC
CGGTTAGCGCGGTCGATGCTAATTTGGAAAACACACACACATTCGCATAT
TTTCATTGGTCAGCCGGTTAGATGCTAATGTTATAAAAACATACGCACAG
GGTGGGAGTCACAGCTGCTAGAGACGGGATTCCTGGCCATGTTCCTCGTG
CCGTGGCTCAGCCTGTCCCGCTTCCCTGCGGGATCTCCCTCCTCCCCGGT
CTGCGTGTGGGGCTACCGCTGGCTTCTGTTTCGGATCATGGTGAGCCTAG
CCGTCGGTGTATTATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10650:4676..5542+

>mRNA_Ecto-sp13_S_contig10650.599.1 ID=mRNA_Ecto-sp13_S_contig10650.599.1|Name=mRNA_Ecto-sp13_S_contig10650.599.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10650:4676..5542+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGCCGCCGGCGCGGTGATTTCGTGTTTTGTGGCCTTGAGGGGGGCGGC
AAATTTCCCGGCGATGGCTCTGCTCTGGGCGCTTTACCACTCCCTGGTGA
ACGTGGGCCAGACCTGGTATTCGTTCGGGTGGGAGTCACAGCTGCTAGAG
ACGGGATTCCTGGCCATGTTCCTCGTGCCGTGGCTCAGCCTGTCCCGCTT
CCCTGCGGGATCTCCCTCCTCCCCGGTCTGCGTGTGGGGCTACCGCTGGC
TTCTGTTTCGGATCATGGTGAGCCTAGCCGTCGGTGTATTATAG
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