mRNA_Ecto-sp13_S_contig1065.598.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1065.598.1
Unique NamemRNA_Ecto-sp13_S_contig1065.598.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1065.598.1 vs. uniprot
Match: A0A6H5JKG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG1_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 3.250e-24
Identity = 48/64 (75.00%), Postives = 53/64 (82.81%), Query Frame = 1
Query:   73 ILNVVRLVSTFS-WLVGSGAFYARSEPGQPPEYCTVFHHMVKSAGSTIKDNLYMSSRIAGVSRP 261
            IL++VRL S  S ++VG   FYARSEPGQPPEYCTVFHHM+KSAGSTIK NLYMSSRIA   RP
Sbjct:   29 ILHIVRLASIHSLYIVGGDTFYARSEPGQPPEYCTVFHHMIKSAGSTIKRNLYMSSRIARAPRP 92          
BLAST of mRNA_Ecto-sp13_S_contig1065.598.1 vs. uniprot
Match: A0A6H5JV00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV00_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.080e-20
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 1
Query:   55 MSPNMMILNVVRLVSTFSWLV-GSGAFYARSEPGQPPEYCTVFHHMVKSAGSTIKDNLYMSSRIAGVSRP 261
            M P+ M+L+ VRL   FS LV GS   YARSEPG+PPEYCTVFHHMVKSAGST+K  L+  +R  G+ RP
Sbjct:    1 MPPHKMVLDAVRLACVFSLLVVGSDTLYARSEPGEPPEYCTVFHHMVKSAGSTVKSLLHSGTRKEGLPRP 70          
BLAST of mRNA_Ecto-sp13_S_contig1065.598.1 vs. uniprot
Match: A0A6H5JT23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT23_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 4.960e-20
Identity = 46/61 (75.41%), Postives = 49/61 (80.33%), Query Frame = 1
Query:   82 VVRLVSTFSWLV-GSGAFYARSEPGQPPEYCTVFHHMVKSAGSTIKDNLYMSSRIAGVSRP 261
            +VRL S  S LV GS  FYARSEPGQPPEYCTVFHHMVKS GSTIK NL++SSR AG  RP
Sbjct:   11 IVRLASVLSLLVVGSDTFYARSEPGQPPEYCTVFHHMVKSGGSTIKHNLHISSRAAGGPRP 71          
BLAST of mRNA_Ecto-sp13_S_contig1065.598.1 vs. uniprot
Match: A0A6H5J534_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J534_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 4.570e-18
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 1
Query:  130 FYARSEPGQPPEYCTVFHHMVKSAGSTIKDNLYMSSRIAGVSRP 261
            FYARS+P QPPEYCTVFHHMVKSAGSTIKDNLY SSRIAGV RP
Sbjct:  576 FYARSDPDQPPEYCTVFHHMVKSAGSTIKDNLYKSSRIAGVPRP 619          
BLAST of mRNA_Ecto-sp13_S_contig1065.598.1 vs. uniprot
Match: D7G5K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K0_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 3.010e-17
Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 1
Query:   70 MILNVVRLVSTFSWLV-GSGAFYARSEPGQPPEYCTVFHHMVKSAGSTIKDNLYMSSRIAGVSRP 261
            M+L+ VRL   FS LV GS   YARSEPG+PPEYCTVFHHMVKSAGST+K  L+ ++R  G+ RP
Sbjct:  113 MLLDTVRLACVFSLLVVGSDTLYARSEPGEPPEYCTVFHHMVKSAGSTVKSLLHRATRNEGLPRP 177          
BLAST of mRNA_Ecto-sp13_S_contig1065.598.1 vs. uniprot
Match: A0A6H5JQC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQC6_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.230e-15
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 1
Query:  118 GSGAFYARSEPGQPPEYCTVFHHMVKSAGSTIKDNLYMSSRIAGVSRP 261
            GS A +ARSEPGQPPEYCTVFHHMVKSAGSTI++ LY +++  G+  P
Sbjct:   25 GSDALFARSEPGQPPEYCTVFHHMVKSAGSTIRNILYTATQEEGLPAP 72          
BLAST of mRNA_Ecto-sp13_S_contig1065.598.1 vs. uniprot
Match: A0A6H5L5I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5I1_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 7.460e-15
Identity = 45/71 (63.38%), Postives = 48/71 (67.61%), Query Frame = 1
Query:   55 MSPNMM-ILNVVRLVSTFSWLV-GSGAFYARSEPGQPPEYCTVFHHMVKSAGSTIKDNLYMSSRIAGVSRP 261
            M P+M  IL++V  VS  S LV GS AFYARSEPGQPPEYCTVFHHMVKS GSTI          AG  RP
Sbjct:    1 MPPHMRTILHIVWSVSVLSLLVVGSDAFYARSEPGQPPEYCTVFHHMVKSGGSTIXXXXXXXXXSAGDPRP 71          
BLAST of mRNA_Ecto-sp13_S_contig1065.598.1 vs. uniprot
Match: A0A6H5JRE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE6_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.480e-14
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 1
Query:  133 YARSEPGQPPEYCTVFHHMVKSAGSTIKDNLYMSSRIAGVSRP 261
            YARSEPG+PPEYCTVFHHMVKSAGST+K  L+ ++R  G+ RP
Sbjct:   30 YARSEPGEPPEYCTVFHHMVKSAGSTVKSLLHSATRKEGLPRP 72          
BLAST of mRNA_Ecto-sp13_S_contig1065.598.1 vs. uniprot
Match: A0A6H5JT32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT32_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.170e-10
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1
Query:  115 VGSGAFYARSEPGQPPEYCTVFHHMVKSAGSTIKDNLYMSSRIAGVSRP 261
            +G  A YA S PG+PPEYCT+F+HMVKS GSTIKD L ++++  GV  P
Sbjct:  110 IGCDALYAWSNPGEPPEYCTLFNHMVKSGGSTIKDKLDIAAKADGVDGP 158          
BLAST of mRNA_Ecto-sp13_S_contig1065.598.1 vs. uniprot
Match: D7FRZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ1_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.170e-10
Identity = 31/43 (72.09%), Postives = 33/43 (76.74%), Query Frame = 1
Query:  133 YARSEPGQPPEYCTVFHHMVKSAGSTIKDNLYMSSRIAGVSRP 261
            YARSE  QPPEYCTVFHHMVKSAGST+K  L  +SR  GV  P
Sbjct:  280 YARSEADQPPEYCTVFHHMVKSAGSTVKSTLRSASRREGVPLP 322          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1065.598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JKG1_9PHAE3.250e-2475.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV00_9PHAE1.080e-2062.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT23_9PHAE4.960e-2075.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J534_9PHAE4.570e-1890.91Integrase catalytic domain-containing protein n=1 ... [more]
D7G5K0_ECTSI3.010e-1764.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQC6_9PHAE2.230e-1568.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5I1_9PHAE7.460e-1563.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRE6_9PHAE1.480e-1472.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT32_9PHAE1.170e-1059.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRZ1_ECTSI1.170e-1072.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1065contigEcto-sp13_S_contig1065:11733..12428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size263
Hectar predicted targeting categorysignal peptide
Exons2
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462544.3978767-CDS-Ecto-sp13_S_contig1065:11734..118661681462544.3978767-CDS-Ecto-sp13_S_contig1065:11734..11866Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1065 11735..11866 -
1681462544.406435-CDS-Ecto-sp13_S_contig1065:12299..124281681462544.406435-CDS-Ecto-sp13_S_contig1065:12299..12428Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1065 12300..12428 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1065.598.1prot_Ecto-sp13_S_contig1065.598.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1065 11735..12428 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1065.598.1

>prot_Ecto-sp13_S_contig1065.598.1 ID=prot_Ecto-sp13_S_contig1065.598.1|Name=mRNA_Ecto-sp13_S_contig1065.598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
REFHLQPAWSLSLILVVRMSPNMMILNVVRLVSTFSWLVGSGAFYARSEP
GQPPEYCTVFHHMVKSAGSTIKDNLYMSSRIAGVSRP
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mRNA from alignment at Ecto-sp13_S_contig1065:11733..12428-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1065.598.1 ID=mRNA_Ecto-sp13_S_contig1065.598.1|Name=mRNA_Ecto-sp13_S_contig1065.598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=696bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1065:11733..12428- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGAGTTCCATCTTCAACCCGCCTGGAGCCTGAGCCTCATTCTGGTCGT GAGGATGTCGCCAAACATGATGATCTTGAATGTCGTCCGGTTGGTCTCGA CTTTTTCCTGGCTAGTTGGGAGTGGTGCGGTAAGGGTTGTGGCTTTCCTA CTGCGGTTTACCCCTGTCTCTGATATAGAGCATTTCACCTTCTCCGTTGC CACAGTGTGTTTGCTATTGCTATTGTCGGAAGTAAAATATGACTGGCAGA GAGTGGATCAGTGATCGCCTGTGTTGTTCAGAGTAAACTTTCAGCAGTGT GTGAAGCCGCAGCGGTCGCTCACACACAGGTCGTCGTATGCCGTACAAAG TCCTTTGCTGCTATGCATGTCTGCACGACGAGTGTGGCCGTGAGGGCTGT GTAAGTTAAGCGACGACGAGGAACTTGGGAATGATCATGGTAGGCCATAC TCATGCAGCATTGGCAGCCCTGTAATGTGCAGGGGGTGGTGCCAAGGACG TTACCCACCCTCATATCCTTGCTGAGACGCTGCAGTATTATTCCTGATTT CTTGGTGCGTAGTTCTACGCGAGGAGTGAACCCGGCCAGCCGCCTGAATA TTGCACGGTCTTCCACCACATGGTGAAAAGCGCGGGCTCAACCATCAAAG ACAACCTGTACATGTCGTCACGGATCGCCGGTGTCTCGAGGCCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1065:11733..12428-

>mRNA_Ecto-sp13_S_contig1065.598.1 ID=mRNA_Ecto-sp13_S_contig1065.598.1|Name=mRNA_Ecto-sp13_S_contig1065.598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1065:11733..12428- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGAGTTCCATCTTCAACCCGCCTGGAGCCTGAGCCTCATTCTGGTCGT
GAGGATGTCGCCAAACATGATGATCTTGAATGTCGTCCGGTTGGTCTCGA
CTTTTTCCTGGCTAGTTGGGAGTGGTGCGTTCTACGCGAGGAGTGAACCC
GGCCAGCCGCCTGAATATTGCACGGTCTTCCACCACATGGTGAAAAGCGC
GGGCTCAACCATCAAAGACAACCTGTACATGTCGTCACGGATCGCCGGTG
TCTCGAGGCCA
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