mRNA_Ecto-sp13_S_contig1065.598.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1065.598.1 vs. uniprot
Match: A0A6H5JKG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG1_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 3.250e-24 Identity = 48/64 (75.00%), Postives = 53/64 (82.81%), Query Frame = 1
Query: 73 ILNVVRLVSTFS-WLVGSGAFYARSEPGQPPEYCTVFHHMVKSAGSTIKDNLYMSSRIAGVSRP 261
IL++VRL S S ++VG FYARSEPGQPPEYCTVFHHM+KSAGSTIK NLYMSSRIA RP
Sbjct: 29 ILHIVRLASIHSLYIVGGDTFYARSEPGQPPEYCTVFHHMIKSAGSTIKRNLYMSSRIARAPRP 92
BLAST of mRNA_Ecto-sp13_S_contig1065.598.1 vs. uniprot
Match: A0A6H5JV00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV00_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 1.080e-20 Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 1
Query: 55 MSPNMMILNVVRLVSTFSWLV-GSGAFYARSEPGQPPEYCTVFHHMVKSAGSTIKDNLYMSSRIAGVSRP 261
M P+ M+L+ VRL FS LV GS YARSEPG+PPEYCTVFHHMVKSAGST+K L+ +R G+ RP
Sbjct: 1 MPPHKMVLDAVRLACVFSLLVVGSDTLYARSEPGEPPEYCTVFHHMVKSAGSTVKSLLHSGTRKEGLPRP 70
BLAST of mRNA_Ecto-sp13_S_contig1065.598.1 vs. uniprot
Match: A0A6H5JT23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT23_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 4.960e-20 Identity = 46/61 (75.41%), Postives = 49/61 (80.33%), Query Frame = 1
Query: 82 VVRLVSTFSWLV-GSGAFYARSEPGQPPEYCTVFHHMVKSAGSTIKDNLYMSSRIAGVSRP 261
+VRL S S LV GS FYARSEPGQPPEYCTVFHHMVKS GSTIK NL++SSR AG RP
Sbjct: 11 IVRLASVLSLLVVGSDTFYARSEPGQPPEYCTVFHHMVKSGGSTIKHNLHISSRAAGGPRP 71
BLAST of mRNA_Ecto-sp13_S_contig1065.598.1 vs. uniprot
Match: A0A6H5J534_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J534_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 4.570e-18 Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 1
Query: 130 FYARSEPGQPPEYCTVFHHMVKSAGSTIKDNLYMSSRIAGVSRP 261
FYARS+P QPPEYCTVFHHMVKSAGSTIKDNLY SSRIAGV RP
Sbjct: 576 FYARSDPDQPPEYCTVFHHMVKSAGSTIKDNLYKSSRIAGVPRP 619
BLAST of mRNA_Ecto-sp13_S_contig1065.598.1 vs. uniprot
Match: D7G5K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K0_ECTSI) HSP 1 Score: 84.3 bits (207), Expect = 3.010e-17 Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 1
Query: 70 MILNVVRLVSTFSWLV-GSGAFYARSEPGQPPEYCTVFHHMVKSAGSTIKDNLYMSSRIAGVSRP 261
M+L+ VRL FS LV GS YARSEPG+PPEYCTVFHHMVKSAGST+K L+ ++R G+ RP
Sbjct: 113 MLLDTVRLACVFSLLVVGSDTLYARSEPGEPPEYCTVFHHMVKSAGSTVKSLLHRATRNEGLPRP 177
BLAST of mRNA_Ecto-sp13_S_contig1065.598.1 vs. uniprot
Match: A0A6H5JQC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQC6_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 2.230e-15 Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 1
Query: 118 GSGAFYARSEPGQPPEYCTVFHHMVKSAGSTIKDNLYMSSRIAGVSRP 261
GS A +ARSEPGQPPEYCTVFHHMVKSAGSTI++ LY +++ G+ P
Sbjct: 25 GSDALFARSEPGQPPEYCTVFHHMVKSAGSTIRNILYTATQEEGLPAP 72
BLAST of mRNA_Ecto-sp13_S_contig1065.598.1 vs. uniprot
Match: A0A6H5L5I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5I1_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 7.460e-15 Identity = 45/71 (63.38%), Postives = 48/71 (67.61%), Query Frame = 1
Query: 55 MSPNMM-ILNVVRLVSTFSWLV-GSGAFYARSEPGQPPEYCTVFHHMVKSAGSTIKDNLYMSSRIAGVSRP 261
M P+M IL++V VS S LV GS AFYARSEPGQPPEYCTVFHHMVKS GSTI AG RP
Sbjct: 1 MPPHMRTILHIVWSVSVLSLLVVGSDAFYARSEPGQPPEYCTVFHHMVKSGGSTIXXXXXXXXXSAGDPRP 71
BLAST of mRNA_Ecto-sp13_S_contig1065.598.1 vs. uniprot
Match: A0A6H5JRE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE6_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 1.480e-14 Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 1
Query: 133 YARSEPGQPPEYCTVFHHMVKSAGSTIKDNLYMSSRIAGVSRP 261
YARSEPG+PPEYCTVFHHMVKSAGST+K L+ ++R G+ RP
Sbjct: 30 YARSEPGEPPEYCTVFHHMVKSAGSTVKSLLHSATRKEGLPRP 72
BLAST of mRNA_Ecto-sp13_S_contig1065.598.1 vs. uniprot
Match: A0A6H5JT32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT32_9PHAE) HSP 1 Score: 65.9 bits (159), Expect = 1.170e-10 Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1
Query: 115 VGSGAFYARSEPGQPPEYCTVFHHMVKSAGSTIKDNLYMSSRIAGVSRP 261
+G A YA S PG+PPEYCT+F+HMVKS GSTIKD L ++++ GV P
Sbjct: 110 IGCDALYAWSNPGEPPEYCTLFNHMVKSGGSTIKDKLDIAAKADGVDGP 158
BLAST of mRNA_Ecto-sp13_S_contig1065.598.1 vs. uniprot
Match: D7FRZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ1_ECTSI) HSP 1 Score: 65.9 bits (159), Expect = 1.170e-10 Identity = 31/43 (72.09%), Postives = 33/43 (76.74%), Query Frame = 1
Query: 133 YARSEPGQPPEYCTVFHHMVKSAGSTIKDNLYMSSRIAGVSRP 261
YARSE QPPEYCTVFHHMVKSAGST+K L +SR GV P
Sbjct: 280 YARSEADQPPEYCTVFHHMVKSAGSTVKSTLRSASRREGVPLP 322 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1065.598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1065.598.1 >prot_Ecto-sp13_S_contig1065.598.1 ID=prot_Ecto-sp13_S_contig1065.598.1|Name=mRNA_Ecto-sp13_S_contig1065.598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp REFHLQPAWSLSLILVVRMSPNMMILNVVRLVSTFSWLVGSGAFYARSEPback to top mRNA from alignment at Ecto-sp13_S_contig1065:11733..12428- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1065.598.1 ID=mRNA_Ecto-sp13_S_contig1065.598.1|Name=mRNA_Ecto-sp13_S_contig1065.598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=696bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1065:11733..12428- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1065:11733..12428- >mRNA_Ecto-sp13_S_contig1065.598.1 ID=mRNA_Ecto-sp13_S_contig1065.598.1|Name=mRNA_Ecto-sp13_S_contig1065.598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1065:11733..12428- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |