mRNA_Ecto-sp13_S_contig10645.596.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10645.596.1
Unique NamemRNA_Ecto-sp13_S_contig10645.596.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10645.596.1 vs. uniprot
Match: D8LJM5_ECTSI (Kinesin family member 3A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJM5_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 2.040e-68
Identity = 142/171 (83.04%), Postives = 145/171 (84.80%), Query Frame = 2 
Query:   14 GGEIGHREPEPGGADDADPGLTDTEKRYKRELEALRGRVWELEGMVGGRLEERERAYRRKLRAAVAECRSSRVRKHGASSNNGVPFXXXXXXXHATPVSETASDVGARRGGDTSAIGPQGGGHRDGPRGAGGGSSHHGSPPREGQRTLSVTISSRQGARGDGGRVRSNSHA 526
            GGEIGH EPE GGADDADPGLTDTEKRYKRELEALRGRVWELEGMVGGRLEERERAYRRKLRAAVAECRSSRVRKHG  SNN    XXXXXXX    VSETASDVGARRG DT  + PQGGG RDGPRGAG       SPP+EGQRTLSVTISSR GA+G GGRVRSNSHA
Sbjct: 2708 GGEIGHGEPETGGADDADPGLTDTEKRYKRELEALRGRVWELEGMVGGRLEERERAYRRKLRAAVAECRSSRVRKHGPPSNNXXXXXXXXXXXXXXXVSETASDVGARRGWDTGDLRPQGGGRRDGPRGAGXXXXXXXSPPQEGQRTLSVTISSRHGAKGGGGRVRSNSHA 2878
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BLAST of mRNA_Ecto-sp13_S_contig10645.596.1 vs. uniprot
Match: A0A6H5K0I5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I5_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 1.900e-51
Identity = 112/132 (84.85%), Postives = 113/132 (85.61%), Query Frame = 2 
Query:   17 GEIGHREPEPGGADDADPGLTDTEKRYKRELEALRGRVWELEGMVGGRLEERERAYRRKLRAAVAECRSSRVRKHGASSNNGVPFXXXXXXXHATPVSETASDVGARRGGDTSAIGPQGGGHRDGPRGAGGG 412
            GEIG REPE GGADDADPGLTDTEKRYKRELEALRGRVWELEGMV GRLEERERAYRRKLRAAVAECRS RVRKHGA SNN    XXXXXXX      ETASDVGARRG DT A+GPQGGG RDGP GAGGG
Sbjct: 2085 GEIGRREPETGGADDADPGLTDTEKRYKRELEALRGRVWELEGMVAGRLEERERAYRRKLRAAVAECRSLRVRKHGALSNNXXXXXXXXXXXXXXXXXETASDVGARRGRDTGALGPQGGGRRDGPHGAGGG 2216
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10645.596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJM5_ECTSI2.040e-6883.04Kinesin family member 3A n=1 Tax=Ectocarpus silicu... [more]
A0A6H5K0I5_9PHAE1.900e-5184.85Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10645contigEcto-sp13_S_contig10645:3973..5745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score163.3
Seed ortholog evalue7.4e-38
Seed eggNOG ortholog2880.D8LJM5
Model size922
KEGG koko:K10395
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0244@2759
Cds size384
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462544.2873735-UTR-Ecto-sp13_S_contig10645:3972..40511681462544.2873735-UTR-Ecto-sp13_S_contig10645:3972..4051Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10645 3973..4051 +
1681462544.2990158-UTR-Ecto-sp13_S_contig10645:4902..49681681462544.2990158-UTR-Ecto-sp13_S_contig10645:4902..4968Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10645 4903..4968 +
1681462544.3177357-UTR-Ecto-sp13_S_contig10645:5352..57451681462544.3177357-UTR-Ecto-sp13_S_contig10645:5352..5745Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10645 5353..5745 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462544.3083465-CDS-Ecto-sp13_S_contig10645:4968..53521681462544.3083465-CDS-Ecto-sp13_S_contig10645:4968..5352Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10645 4969..5352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10645.596.1prot_Ecto-sp13_S_contig10645.596.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10645 4969..5352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10645.596.1

>prot_Ecto-sp13_S_contig10645.596.1 ID=prot_Ecto-sp13_S_contig10645.596.1|Name=mRNA_Ecto-sp13_S_contig10645.596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
MVGGRLEERERAYRRKLRAAVAECRSSRVRKHGASSNNGVPFNSGAPFKH
ATPVSETASDVGARRGGDTSAIGPQGGGHRDGPRGAGGGSSHHGSPPREG
QRTLSVTISSRQGARGDGGRVRSNSHA*
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mRNA from alignment at Ecto-sp13_S_contig10645:3973..5745+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10645.596.1 ID=mRNA_Ecto-sp13_S_contig10645.596.1|Name=mRNA_Ecto-sp13_S_contig10645.596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1773bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10645:3973..5745+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCGGCGGCAGCGGGGGCGAGATCGGGCATCGAGAGCCGGAGCCGGGAG
GCGCGGACGACGCCGACCCGGGTCTGACGGTGAGGAGAGTCTGCGTGAGC
AGGCATCCGCTGAGGTCTTGAAATCGAATCCGTGTGTCGCGGGTATGTAC
GCGCAAGGACGGTGGAAGAGGTTGGTTCCAGCGGGATTTAGGAATGTGGA
TGCTACAAGGTTGGGATTGCTCGTATCTATCCCGTGCGGGTGCACGTGGG
ACACGGTCCACGCAAAGGAATATCTATACCGGGGTGGGTTGTGTAATCAT
AGTCGTGCATGCCGTAGTCGTTAGACCATTGACCTCACTGCTCGTATCTA
TCCCGTGCGGGTGCACGTGGGACACGGTCCACGCAAAGGAATATCTACAC
CGGGGTGGGTTGTGTAATCATAGTCGTGCATGCCGTAGTCGTTAGACCAT
TGACCTCACACCCCTACAAAGCCGAGACGGCGCAAGCTGGTTTTTCACCG
GACTAGACTCTGACATCACCAAGCGCAAAGCACCGTGAGATATTCGGCGA
GTCGCATGAAGGGTGCGCTGCGTCCTGATAAGGGTGTTGGGGATGTTGTG
CTTACTTCCTTGCGTACGGGTGACAGCTGCGTATGACTTAGTGTTTTTTC
TTGTGCTTTCACTTCGAGAGACAGCTATAAGCACATCTACACGAGGAAGG
CGATTTTTTGCGATCTGGTTTTCTTCTTCCTCCCGGTGTCATAGATATCA
TGCACCAAACGGAAGAAAACAGCCGTGTAGAAGCACATTCTGTTTTCAGC
CGCGCTGAGACTGACATCTTTTCATTTGTTAGCGCGGTCGACACTGATGA
ACATACACACGTACATCATGTGTCGCGTGCGGCGGCCGGGCGGGACCGAC
TGTCCTTGGTGTCCAACCTCCCTCATGCAGGACACGGAGAAGCGGTACAA
GAGAGAGCTGGAGGCGTTGCGGGGCCGGGTCTGGGAGCTAGAGGGCATGG
TCGGGGGCCGCCTGGAGGAGCGCGAGAGGGCCTATCGGCGGAAGCTTCGC
GCGGCCGTCGCCGAGTGCCGCTCGTCGCGCGTGCGGAAACATGGGGCCTC
CTCAAACAACGGGGTTCCCTTCAATAGCGGGGCCCCCTTCAAACACGCCA
CCCCCGTCTCTGAGACGGCGTCCGATGTCGGCGCCAGGAGAGGCGGGGAT
ACCAGCGCTATCGGACCGCAGGGAGGGGGGCACCGTGACGGTCCCCGTGG
GGCGGGGGGGGGCTCTTCGCATCACGGGTCGCCGCCTCGGGAAGGGCAGA
GGACGCTTTCGGTGACGATAAGCTCGAGGCAAGGGGCCAGGGGGGACGGC
GGCCGTGTTCGAAGCAACAGCCATGCTTGAAGAAACTCTCGGTTCGAGTG
TAAGAGCGGAATGTAGTGGAAAACAGTATCGCCCCGGAGTTTGGAGCGAT
AACTTCCGCAGTTGATAGTCGTGTGACCTTGATAGTTGGCTAGTTTTTAA
GGGGGCTGCCTACGCTCGGCTAGGCGACGCAAAGAAGTATAAAGAGCAGG
TGCCAATGTAGTCTATACTGTAAAAGATCGTACCAATGTTTAGGTACCAT
GCGAGCTCTAAAACTGAGCAGCTTGTGGATAGCAACCGCCGTAATGGCTT
TTTGTAGTTAGAGCGATTCCCTTCTAGTGGGCCCGGTTTTCACACAGGGG
CGTGAACCGTCAGGAAGATTAACTAGCCAAGTTGAACCAAGCGTGTACAG
TAGACGTGCAAACGATGTACTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10645:3973..5745+

>mRNA_Ecto-sp13_S_contig10645.596.1 ID=mRNA_Ecto-sp13_S_contig10645.596.1|Name=mRNA_Ecto-sp13_S_contig10645.596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10645:3973..5745+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGGGGGCCGCCTGGAGGAGCGCGAGAGGGCCTATCGGCGGAAGCT
TCGCGCGGCCGTCGCCGAGTGCCGCTCGTCGCGCGTGCGGAAACATGGGG
CCTCCTCAAACAACGGGGTTCCCTTCAATAGCGGGGCCCCCTTCAAACAC
GCCACCCCCGTCTCTGAGACGGCGTCCGATGTCGGCGCCAGGAGAGGCGG
GGATACCAGCGCTATCGGACCGCAGGGAGGGGGGCACCGTGACGGTCCCC
GTGGGGCGGGGGGGGGCTCTTCGCATCACGGGTCGCCGCCTCGGGAAGGG
CAGAGGACGCTTTCGGTGACGATAAGCTCGAGGCAAGGGGCCAGGGGGGA
CGGCGGCCGTGTTCGAAGCAACAGCCATGCTTGA
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