mRNA_Ecto-sp13_S_contig1063.587.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1063.587.1
Unique NamemRNA_Ecto-sp13_S_contig1063.587.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1063.587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1063contigEcto-sp13_S_contig1063:7402..8384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size983
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_000230.3
Cds size696
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462543.3836374-UTR-Ecto-sp13_S_contig1063:7401..75151681462543.3836374-UTR-Ecto-sp13_S_contig1063:7401..7515Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1063 7402..7515 +
1681462543.4028194-UTR-Ecto-sp13_S_contig1063:8211..83841681462543.4028194-UTR-Ecto-sp13_S_contig1063:8211..8384Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1063 8212..8384 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462543.394453-CDS-Ecto-sp13_S_contig1063:7515..82111681462543.394453-CDS-Ecto-sp13_S_contig1063:7515..8211Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1063 7516..8211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1063.587.1prot_Ecto-sp13_S_contig1063.587.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1063 7516..8211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1063.587.1

>prot_Ecto-sp13_S_contig1063.587.1 ID=prot_Ecto-sp13_S_contig1063.587.1|Name=mRNA_Ecto-sp13_S_contig1063.587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=232bp
MTDGTPLRPTIKSPLLHNQGQSQLIRFRIVTVESVERGGVILCDLRCQKR
AEIDKLHSPTSREPESLHFTPPGPIFKARLLHDEGDFSTKPCFFGKLSTR
RSQPRHFWCRHSRGSRVNRCFEDRCRGCAILRHLRHTNVSPGSKAVGPAR
HTKRRRDCTPPAVDRLWKLDCPIAKGGAERARYVYGKPLDQMFPKRSFLV
VAPSILVVEQSSSENRSIGGCHLSTSCGIPR*
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mRNA from alignment at Ecto-sp13_S_contig1063:7402..8384+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1063.587.1 ID=mRNA_Ecto-sp13_S_contig1063.587.1|Name=mRNA_Ecto-sp13_S_contig1063.587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=983bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1063:7402..8384+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCCGTGCTTTCTCAGCCACTTCAAAACCTTGGTTGTACGAACGACGCAG
GGTTGTTGTTTTGGTTGCGGATAATGTTTTGTTGTTGTTGTTGTTGTTGT
TGCGCCGTAGGAGAATGACAGATGGCACCCCCCTCAGACCGACTATCAAA
TCTCCGTTGCTCCACAACCAAGGACAAAGTCAACTGATACGATTTCGAAT
TGTGACCGTCGAATCGGTCGAGAGGGGGGGTGTCATCTTATGCGACCTAC
GGTGCCAGAAGAGGGCGGAAATAGACAAACTCCATTCTCCAACGTCCCGG
GAGCCAGAATCATTACATTTCACACCCCCTGGGCCGATCTTCAAAGCTCG
ACTACTCCACGACGAAGGAGATTTCTCAACCAAACCATGTTTTTTCGGAA
AGCTCTCGACGAGACGGTCCCAACCCCGCCATTTTTGGTGCCGCCACTCC
CGCGGCTCTAGAGTAAATCGTTGCTTTGAGGATCGGTGCAGGGGGTGTGC
TATCTTACGTCATTTACGGCATACAAATGTCAGTCCTGGGAGCAAAGCAG
TAGGACCCGCACGACATACAAAGAGGCGGAGAGATTGCACTCCCCCTGCA
GTAGACCGACTTTGGAAGCTCGATTGCCCCATAGCCAAGGGGGGTGCGGA
AAGAGCCCGATACGTCTACGGAAAGCCCCTCGACCAGATGTTTCCAAAAC
GATCATTCTTGGTGGTGGCACCTTCAATCTTGGTTGTGGAGCAATCGAGC
TCTGAAAATCGGTCGATAGGGGGGTGCCATCTCTCCACCTCTTGCGGAAT
ACCACGGTGACAATCGGTGTATAGGGGGGTGCCATTTCTCGACCTCTTAC
GGAATACCACGGTACGGTATACGGTACGGTACAAACTTGGTTGTGGAGCA
ATCGACTTCTACAATCGGTCTAGAGTGGGTGTCATCCCTCCGCCGCATAC
GGCAAGGCAGCAAGCGAGGGATCGCCTAGCTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1063:7402..8384+

>mRNA_Ecto-sp13_S_contig1063.587.1 ID=mRNA_Ecto-sp13_S_contig1063.587.1|Name=mRNA_Ecto-sp13_S_contig1063.587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=696bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1063:7402..8384+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAGATGGCACCCCCCTCAGACCGACTATCAAATCTCCGTTGCTCCA
CAACCAAGGACAAAGTCAACTGATACGATTTCGAATTGTGACCGTCGAAT
CGGTCGAGAGGGGGGGTGTCATCTTATGCGACCTACGGTGCCAGAAGAGG
GCGGAAATAGACAAACTCCATTCTCCAACGTCCCGGGAGCCAGAATCATT
ACATTTCACACCCCCTGGGCCGATCTTCAAAGCTCGACTACTCCACGACG
AAGGAGATTTCTCAACCAAACCATGTTTTTTCGGAAAGCTCTCGACGAGA
CGGTCCCAACCCCGCCATTTTTGGTGCCGCCACTCCCGCGGCTCTAGAGT
AAATCGTTGCTTTGAGGATCGGTGCAGGGGGTGTGCTATCTTACGTCATT
TACGGCATACAAATGTCAGTCCTGGGAGCAAAGCAGTAGGACCCGCACGA
CATACAAAGAGGCGGAGAGATTGCACTCCCCCTGCAGTAGACCGACTTTG
GAAGCTCGATTGCCCCATAGCCAAGGGGGGTGCGGAAAGAGCCCGATACG
TCTACGGAAAGCCCCTCGACCAGATGTTTCCAAAACGATCATTCTTGGTG
GTGGCACCTTCAATCTTGGTTGTGGAGCAATCGAGCTCTGAAAATCGGTC
GATAGGGGGGTGCCATCTCTCCACCTCTTGCGGAATACCACGGTGA
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