mRNA_Ecto-sp13_S_contig10625.583.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10625.583.1
Unique NamemRNA_Ecto-sp13_S_contig10625.583.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10625.583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10625contigEcto-sp13_S_contig10625:2774..3539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size734
Hectar predicted targeting categoryother localisation
Exons2
Cds size384
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462543.1772537-UTR-Ecto-sp13_S_contig10625:2773..30601681462543.1772537-UTR-Ecto-sp13_S_contig10625:2773..3060Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10625 2774..3060 -
1681462543.2013538-UTR-Ecto-sp13_S_contig10625:3476..35391681462543.2013538-UTR-Ecto-sp13_S_contig10625:3476..3539Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10625 3477..3539 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462543.1855738-CDS-Ecto-sp13_S_contig10625:3060..31371681462543.1855738-CDS-Ecto-sp13_S_contig10625:3060..3137Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10625 3061..3137 -
1681462543.19344-CDS-Ecto-sp13_S_contig10625:3169..34761681462543.19344-CDS-Ecto-sp13_S_contig10625:3169..3476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10625 3170..3476 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10625.583.1prot_Ecto-sp13_S_contig10625.583.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10625 3061..3476 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10625.583.1

>prot_Ecto-sp13_S_contig10625.583.1 ID=prot_Ecto-sp13_S_contig10625.583.1|Name=mRNA_Ecto-sp13_S_contig10625.583.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
MSLRKKSVLGTRGADHQQTEWKRSKLDKREKEHRKKRVHPLVGKKQEADE
VHRRKAAVVPRVRQPGVIEESRRVSLDRSAQVAQAVDTIAPASSSSEAAK
DAGSLHSYSSWRSQVEAQVEKIDCRQQ*
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mRNA from alignment at Ecto-sp13_S_contig10625:2774..3539-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10625.583.1 ID=mRNA_Ecto-sp13_S_contig10625.583.1|Name=mRNA_Ecto-sp13_S_contig10625.583.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=766bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10625:2774..3539- (Ectocarpus species13 EcNAP12_S_4_19m)
CACATCGTTAAGGAACCGTAGGGTTGCCCAACGCAGCAGTACCCCTCGGC
TGACGTGGGAAATATGTCGCTTCGAAAGAAATCTGTACTCGGAACGAGGG
GAGCTGACCACCAACAAACCGAGTGGAAACGTTCCAAGTTAGACAAGAGG
GAGAAAGAACACCGAAAAAAGCGTGTTCACCCGTTGGTGGGCAAGAAGCA
GGAAGCAGATGAGGTGCACCGCAGAAAAGCAGCCGTAGTACCGCGTGTTA
GGCAGCCAGGCGTGATAGAAGAGTCGCGTCGGGTAAGTCTAGACAGGAGT
GCTCAAGTAGCTCAGGCGGTAGACACCATTGCCCCAGCCAGCAGTAGCAG
CGAAGCCGCGAAAGACGCGGGTAGAGTAAAGACAGCGGTCCGTGCACCGC
AGGCTCTTTACATAGCTACAGTAGCTGGAGGTCTCAAGTCGAAGCACAGG
TCGAGAAAATTGACTGCCGACAACAATAATGAGGAATTTTCTGCGTTCCA
CATGTCAGCGCTAGCTGGATATCCTGAAAATCCATCCGCGTTAAACGCCG
CGTCAAAACGCGTACGCGTACCTGCCAGAGTAAACAATAAATCGGTTGAT
CAAGTTACAATCGATACAGCGTGTGACGTACCGTGTATCTCCGCAGAATT
TATGCGCAGTCACCAAACGCTGAAAAACACGGAAATTTTTAGCTTGGGCG
AGGTTAAACACCTTGCCGCAGCCATGTGAGCTGTGCATCCTATCCTCCTT
GTTTTTTTTTGCCAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10625:2774..3539-

>mRNA_Ecto-sp13_S_contig10625.583.1 ID=mRNA_Ecto-sp13_S_contig10625.583.1|Name=mRNA_Ecto-sp13_S_contig10625.583.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10625:2774..3539- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGCTTCGAAAGAAATCTGTACTCGGAACGAGGGGAGCTGACCACCA
ACAAACCGAGTGGAAACGTTCCAAGTTAGACAAGAGGGAGAAAGAACACC
GAAAAAAGCGTGTTCACCCGTTGGTGGGCAAGAAGCAGGAAGCAGATGAG
GTGCACCGCAGAAAAGCAGCCGTAGTACCGCGTGTTAGGCAGCCAGGCGT
GATAGAAGAGTCGCGTCGGGTAAGTCTAGACAGGAGTGCTCAAGTAGCTC
AGGCGGTAGACACCATTGCCCCAGCCAGCAGTAGCAGCGAAGCCGCGAAA
GACGCGGGCTCTTTACATAGCTACAGTAGCTGGAGGTCTCAAGTCGAAGC
ACAGGTCGAGAAAATTGACTGCCGACAACAATAA
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