mRNA_Ecto-sp13_S_contig1062.578.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1062.578.1
Unique NamemRNA_Ecto-sp13_S_contig1062.578.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1062.578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1062contigEcto-sp13_S_contig1062:15417..18598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size928
Hectar predicted targeting categoryother localisation
Exons5
Cds size612
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1062.578.1prot_Ecto-sp13_S_contig1062.578.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1062 15476..18341 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462542.663099-UTR-Ecto-sp13_S_contig1062:15416..154751681462542.663099-UTR-Ecto-sp13_S_contig1062:15416..15475Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1062 15417..15475 -
1681462542.725775-UTR-Ecto-sp13_S_contig1062:18341..185981681462542.725775-UTR-Ecto-sp13_S_contig1062:18341..18598Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1062 18342..18598 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462542.6724305-CDS-Ecto-sp13_S_contig1062:15475..154861681462542.6724305-CDS-Ecto-sp13_S_contig1062:15475..15486Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1062 15476..15486 -
1681462542.6851873-CDS-Ecto-sp13_S_contig1062:15864..159221681462542.6851873-CDS-Ecto-sp13_S_contig1062:15864..15922Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1062 15865..15922 -
1681462542.6935322-CDS-Ecto-sp13_S_contig1062:16881..170551681462542.6935322-CDS-Ecto-sp13_S_contig1062:16881..17055Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1062 16882..17055 -
1681462542.7045476-CDS-Ecto-sp13_S_contig1062:17673..178281681462542.7045476-CDS-Ecto-sp13_S_contig1062:17673..17828Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1062 17674..17828 -
1681462542.7174358-CDS-Ecto-sp13_S_contig1062:18127..183411681462542.7174358-CDS-Ecto-sp13_S_contig1062:18127..18341Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1062 18128..18341 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1062.578.1

>prot_Ecto-sp13_S_contig1062.578.1 ID=prot_Ecto-sp13_S_contig1062.578.1|Name=mRNA_Ecto-sp13_S_contig1062.578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=204bp
MSKWVMLAPKHVAFSTPPSVQFGWQRDRHMLSVIPHQPTPHFPRFSVPWV
FPGAGDNGSCTIHAGSSASTSARRRDSPNDRCGVKRRRSALSSCCTNLPP
SLTRQTSANSRNLGTGTASTTNQGLIHLPLAAISRPSNDLPGSRLPPVVP
ASPAQLWDVFATSTFLTEQSIAQSVVDATSPVPATAAPATFLDMELGINL
NAV*
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mRNA from alignment at Ecto-sp13_S_contig1062:15417..18598-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1062.578.1 ID=mRNA_Ecto-sp13_S_contig1062.578.1|Name=mRNA_Ecto-sp13_S_contig1062.578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3182bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1062:15417..18598- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGGAATCATCGGCATTCTAACACAGCAACAACAGGTTTCGGGACGGGC
AGGGGTGGGGGGTGGTTTTCAAACCGGCGAAAGTCTATGATGTGATCACC
CTGCATGTGTCGCCTGCGACGATTGTAGCCCTACCGCCCTTGCCTTCAAT
GGGAATGCAAAGCCTAGGCAATCCTTGTACATAGCCAAACGCCACGCTAC
CATTGGAACTAGTCATGGACGCTAAAACATGCCCAAGTACAACCGTTAAT
TCCAGCCATGTCGAAATGGGTAATGTTGGCACCTAAACACGTAGCGTTTT
CTACTCCACCGTCTGTACAATTCGGGTGGCAGAGGGACAGGCACATGCTA
TCGGTGATACCACACCAACCAACGCCCCACTTTCCACGTTTTAGCGTCCC
ATGGGTATTTCCAGGTGCCGGTGACAACGGCTCCTGCACCATTCATGCGG
GCAGCTCCGCTTCAACCTCAGGTGAGCGTTGAACCTATGGACGTCGACAC
CGACGACACCGAGAGACATGTCCCCCAAGGTTTCGTGTCTGCCTCATCGT
TTTTTGTTACTCCAGGCGAAGGCGTGACGAGTTGGTGCAATGTTGTGGAG
GTTTGCCATACTGAGTGTTCGTTTGCCTATCGTTCCGCGTTGCACAGCAC
ATGATGATAGCTTTATTCCGGCCTTTTCGGACGTAGTTTGTGGCCGTTTT
GTGCGTGCACGTTCTTTCTTCCCTCGGGCGTGACTCATCGTTTTCCTCAC
ACCCCTCGCTCTGTCGCTAGCGCGGCGACGAGATTCACCGAACGACAGAT
GCGGTGTGAAAAGGCGCCGATCCGCCTTGAGTTCGTGTTGTACGAATCTC
CCGCCCTCTCTCACGCGGCAGACTTCAGCAAATTCCCGAAACTTGGGTAC
GGGTACGGCCTCAACAACCAATCAGGTGAGAACGACAGCACGTTGGATTG
TGCGACGATTCTCGTGGCCGGTAATCCTGGCGAGGGCTAAGGATAATGCT
GTTGCCAGCTTCTCGCCTCCTCACTGTATTTGCGTCACACATGTGTAAGG
GGTTTGGGTTGCGTACCACGGAGATGTTTGGCATCGCGAATGACAGTTAT
CATCGATGGGAGTTTTTCGTGTTGAAGGTCGCATCACGCAAGACGTCGGC
ATCCGCTCCAACGGCCCTAGATATCATGCTTTTTTGCTACCTGCATCAAA
TGCTCTTGGGAGTGTGTGTTTGAGCCCTCCTGGCGGGAAACCTCGACCTG
TTTCGAATTCCGTTAGTAAACCTCGGGCGTCAAGTGCTCCCCACGTCCGC
CTATCCGTCTACCGTGTACTTTTATTGCTGTACTCACCTTGGGCTCGGAT
AGACCTCCTGTTCATGCCTTACCCCAACACAGCATCCATGCCGGCTACCT
ATTGCGCCCGCTGATGTTAGCTCGAAGCTGATTCGCGTACAAATTTATTC
GGCTGCTGTCATTTCGATCGGGTTTGGGTTAATTGGGACATGCACATTTC
CCCCTCTTGAATCGTCGAACTCTCTGCCTCGTTCTCGCGCCAGGGTCTCA
TCCACCTGCCCCTTGCGGCCATAAGCAGGCCCTCCAACGACTTGCCAGGT
TCACGCCTACCTCCAGTCGTTCCCGCTTCGCCTGCACAGTTGTGGGATGT
TTTTGCCACCTCCACCTTCCTGACCGAGCAAAGTATCGCGCAGTCTGTCG
TCGACGCTACCTCACCGGTAGAGTGCCCCCCTCCTCCTGAAAATATATAC
AAGTAGGCCACCAAGATTTGGAAGTTCATATTGATTTCACAAACACGTCA
AACGAGTTGTGGTTGTGGGTGTTGTTGTTTGTGTCGTAGGCAACGAAGAC
AGTCAGACTCGGATGAGGACAAAACAACAAAGGCATTTGCTGTGCAAGGC
ATGTGTATTCACCCTGCTCGGACGTTTGTCCTACGCGCATGCAAGTGTCC
CTCATTCAACATGAGTCGGCCGAGCAACGACCGGCATGTCGGTGTTGGGC
TACCCAGGGGTAGCGCCGATGCACGACGGCCGGTCTTGGTCTGGTTGGCT
CACGTCACTGTGCTGAATATCCTTCGTATGAAGAGCGACCTGAGCTCCGG
CAGTCCTCAGCGCGAAAGGCAACTGCCGGCCGCTGGATTCCTGCCCTGCT
CTCATGGTCAGAGTCTTCGCCTCTGCGACGTCGGTAGCTTGGGCGCTTAT
ACGATTAGCCCGGTTTTACCGGCACCCCTTTGTCTCATTTTTGGAAAGTA
CTCGTACTATTTCTTGGTCGTCGATTGAGAGTTACGGTCTACGCGTTTCC
AGAGTTGGAAACTAGAAAGTTGGCTGCATCAATTGGATTTGGATTTTGGC
CCTAACTTCGTAGAACGCGTTTCAGTTGTTTCCTGACGTATTTGCTTGGT
TTGTGTCGTAGGCAACGAAGACAGCATTCACTCGGATGGACACGAATTCC
CCAAGCCAATTAATTGTTGGTGAACACAAGAGGCGCTATCTGAACCAGTC
AGCCAACATTTGCCATTTTTTTTTTGCGTTTTGTTCGTACCTTCGATTTC
ATCGGTTTCATGTACCCCGACGGTACCTTGGGTGGCAGAAAGCGTAGGCA
TTTGCTATCGATGACACCACACCAACGAGCGCCCCACTTTCTTACACGTC
TAGCGTCCCATGGGTGCTATAACCAGGTGCCGGCGACAGCGGCTCCCGCC
ACATTTCTTGACATGGAGCTCGGCATCAACCTCAGTGAGGGTTGGGACCA
ATTGTCGCCGCCAACAACGACACCAACGATTATACGTGACCGGTCGATTT
CGATGATTGTCTGTCTCCTCATGTCCTCCGAGGTTCCAAGTCTCCTGTAT
CGTTCACGTAGGTTCATGCGAAGGCGTGGCAGTTGGTGCAGTGGTGGTGG
TCAGGGTTTGCCCTGCTCGATGTTTGCTGACCTGTCGTCCCGAGTTGTCC
AGCGCATACGTGGTGATAGCCTTTCGTCCCAGTCGTTTCGGGTGTGGATT
GTAGCCCCAACTGTGGGAGCATGTATGTTGATTCTTCTCGGACATGAATC
ATTAGTTCCCTCGCTCCCCTCGCTCCGCCGCTTGCGTGGCGATGCCCTTC
ACCGAATGACAGATGCGGTGTGAACAAGTGCCGACCCGCCTTGAGTTCGT
GTCGTACGAAATTCCCACCCTCTACCACGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1062:15417..18598-

>mRNA_Ecto-sp13_S_contig1062.578.1 ID=mRNA_Ecto-sp13_S_contig1062.578.1|Name=mRNA_Ecto-sp13_S_contig1062.578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1062:15417..18598- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGAAATGGGTAATGTTGGCACCTAAACACGTAGCGTTTTCTACTCC
ACCGTCTGTACAATTCGGGTGGCAGAGGGACAGGCACATGCTATCGGTGA
TACCACACCAACCAACGCCCCACTTTCCACGTTTTAGCGTCCCATGGGTA
TTTCCAGGTGCCGGTGACAACGGCTCCTGCACCATTCATGCGGGCAGCTC
CGCTTCAACCTCAGCGCGGCGACGAGATTCACCGAACGACAGATGCGGTG
TGAAAAGGCGCCGATCCGCCTTGAGTTCGTGTTGTACGAATCTCCCGCCC
TCTCTCACGCGGCAGACTTCAGCAAATTCCCGAAACTTGGGTACGGGTAC
GGCCTCAACAACCAATCAGGGTCTCATCCACCTGCCCCTTGCGGCCATAA
GCAGGCCCTCCAACGACTTGCCAGGTTCACGCCTACCTCCAGTCGTTCCC
GCTTCGCCTGCACAGTTGTGGGATGTTTTTGCCACCTCCACCTTCCTGAC
CGAGCAAAGTATCGCGCAGTCTGTCGTCGACGCTACCTCACCGGTGCCGG
CGACAGCGGCTCCCGCCACATTTCTTGACATGGAGCTCGGCATCAACCTC
AATGCGGTGTGA
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