mRNA_Ecto-sp13_S_contig10618.575.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10618.575.1
Unique NamemRNA_Ecto-sp13_S_contig10618.575.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10618.575.1 vs. uniprot
Match: A0A6H5L9N5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L9N5_9PHAE)

HSP 1 Score: 398 bits (1023), Expect = 4.360e-134
Identity = 201/209 (96.17%), Postives = 203/209 (97.13%), Query Frame = 2 
Query:    2 VIVLVGHVIVRGSIRVVKKKLKVRGEQKVHLEQLNLTETPARSSSGHFTVVLNGVGPNGEFNSFVSPNDDASYGAVSPGHLKGISKLISGATNCNVRDMGGFTEGAAVPFGVRISMPDVLALMRQSWVYERFCQTKCGTMTVVVLRSQHSRGKDKLRVAWENSGSLDYTKAQVYTEREWKKTKFAGKTKTMPEGIADVDMALDKTLVFD 628
            VIVLVGHVIVRGSIR VKKKLKVR EQK HLEQLNLTET ARSSSGHFTVVLNGVGPNGEFNS+VSPNDDASY AVSPGHLKGISKLISGATNCNVRDMGG+TEGAAVPF VRISMPDVLALMRQSWVYERFCQTKCGTMTVVVLRSQHSRGKDKLRVAWENSGSLDYTKAQVYTEREWKKTKFAGKTKTMPEGIADVDMALDKTLVFD
Sbjct:   87 VIVLVGHVIVRGSIRAVKKKLKVRAEQKAHLEQLNLTETTARSSSGHFTVVLNGVGPNGEFNSYVSPNDDASYRAVSPGHLKGISKLISGATNCNVRDMGGYTEGAAVPFCVRISMPDVLALMRQSWVYERFCQTKCGTMTVVVLRSQHSRGKDKLRVAWENSGSLDYTKAQVYTEREWKKTKFAGKTKTMPEGIADVDMALDKTLVFD 295
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10618.575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L9N5_9PHAE4.360e-13496.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10618contigEcto-sp13_S_contig10618:2830..5212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1485
Hectar predicted targeting categoryother localisation
Exons3
Cds size873
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462542.5608544-UTR-Ecto-sp13_S_contig10618:2829..34411681462542.5608544-UTR-Ecto-sp13_S_contig10618:2829..3441Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10618 2830..3441 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462542.571181-CDS-Ecto-sp13_S_contig10618:3441..37971681462542.571181-CDS-Ecto-sp13_S_contig10618:3441..3797Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10618 3442..3797 -
1681462542.5808992-CDS-Ecto-sp13_S_contig10618:4426..47951681462542.5808992-CDS-Ecto-sp13_S_contig10618:4426..4795Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10618 4427..4795 -
1681462542.5903316-CDS-Ecto-sp13_S_contig10618:5064..52121681462542.5903316-CDS-Ecto-sp13_S_contig10618:5064..5212Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10618 5065..5212 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10618.575.1prot_Ecto-sp13_S_contig10618.575.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10618 3442..5212 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10618.575.1

>prot_Ecto-sp13_S_contig10618.575.1 ID=prot_Ecto-sp13_S_contig10618.575.1|Name=mRNA_Ecto-sp13_S_contig10618.575.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=291bp
GDCPGGTRHRPRKHPSGQKEAQGSRGAEGAPRAAQSHGNTSSIILGALHG
GAERGRAQRRVQLVRVPQRRRLLRSRLARPPQGHLEAHQWRHQLQREGHG
GLHGGGGRALRRPHQHAGRARADAAVVGVRKVLPDQVRDHDGGGAAVAAQ
PRKGQAEGGLGELRQPGLHQSPGVHGEGVEKDKVRRQDQDDAGGNRGRGH
GTRQDPGVRLGCACCVRPRRLMREHGTGQRRGHVQGSKTNETRGGTTGLA
GGHERGGTWTLHSSGAGNDGTSAVAAQVQQWHIGMNEGGV*
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mRNA from alignment at Ecto-sp13_S_contig10618:2830..5212-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10618.575.1 ID=mRNA_Ecto-sp13_S_contig10618.575.1|Name=mRNA_Ecto-sp13_S_contig10618.575.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2383bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10618:2830..5212- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGATTGTCCTGGTGGGACACGTCATCGTCCGAGGAAGCATCCGAGTGG
TCAAAAAGAAGCTCAAGGTTCGAGGGGAGCAGAAGGTGCACCTCGAGCAG
CTCAATCTCACGGAAACACCAGCTCGATCATCCTCGGGGCACTTCACGGT
GCGTTGCGTTGTTTCTCCCCTACGTGTCTGTGGGAGCTTTTTGGAGACGT
GTGCTACTTCATTTTTGTTGAGAGTCCCTCGAACAGCAAGCAGTGTTGTG
TTCGCTGAACGAACGTGGCTAAGGCCCTCTGTTTAAGGACAAGGTTCCGT
GTAACGCCTGTCGCCTCCCCTGCAGTTGGTCTTCATCTAGCCTGCTTCCC
GCACGACTCTCACCCCACTCTCTCCGTCTTCCCTCACAACACACACGATG
AACCACGCTCGGCCCAGGTGGTGCTGAACGGGGTCGGGCCCAACGGAGAG
TTCAACTCGTTCGTGTCCCCCAACGACGACGCCTCCTACGGAGCCGTCTC
GCCCGGCCACCTCAAGGGCATCTCGAAGCTCATCAGTGGCGCCACCAACT
GCAACGTGAGGGACATGGGGGGCTTCACGGAGGGGGCGGCCGTGCCCTTC
GGCGTCCGCATCAGCATGCCGGACGTGCTCGCGCTGATGCGGCAGTCGTG
GGTGTACGAAAGGTTCTGCCAGACCAAGTGCGGGACCATGACGGTGGTGG
TGCTGCGGTCGCAGCACAGCCGCGGAAAGGACAAGCTGAGGGTGGCCTGG
GAGAACTCCGGCAGCCTGGACTACACCAAAGCCCAGGTGTGTGTGCGTTG
GTGTGGTTTTTATTGTTGGCGTCGACCGCGCCAACCGGCTGGCCAATGAA
GAAGATGTCAATTTCAGTCTGGTTGACCATTCAACATGCTTCCAGAGGCC
ATGGTGTGTCTGTGTGCATGAGTGCGTGCGGATGTACGTACAAGTGTTCC
GTAACGTAGCGTCGGCCGTGCTATACGCGGCTGGCCAATGAAAAAATGCC
CATCTTGGCGGGATAACAGATTCAGCAACATCTATGTTCTAGTCTTCGGG
GTGCCGCGCATTAGGGGTTGCAGGTTTTTGCAGGGGTGGGATCGTTGGCA
CTCAGCGGTACGTCTTCTGCGTTGTCTTTTTCTTTTGGTGGACTCACTGG
CAACCATTTTACATGTACAAGCATCACGTCGTGCATGCTTCTTTGTTTTG
GACCGCCGCATGAAACCATCGTGACTTTGGTAGCCATCTGTACAAGTATT
TTACGCAGACAAAGGATGCTTCTCCCCCTTTCTCTACTTTGAAGTTCTTT
ATTATGTTTTGCAGCATATGCTGCTCGGCTATGCTGAAGAACGCGTGTTG
TTATCTGAAACGGTGAGAAAACCATGTGTCATCCTTCTGTGAATTGTTTG
GCGTATCCGGAACAGGTGTACACGGAGAGGGAGTGGAAAAAGACAAAGTT
CGCCGGCAAGACCAAGACGATGCCGGAGGGAATCGCGGACGTGGACATGG
CACTCGACAAGACCCTGGTGTTCGACTAGGCTGCGCTTGCTGCGTTCGTC
CCCGTCGGTTAATGCGAGAACATGGTACCGGTCAGCGACGAGGGCACGTG
CAAGGCTCTAAAACGAACGAGACACGGGGCGGGACTACAGGTCTTGCTGG
AGGCCATGAGAGAGGAGGTACTTGGACACTACACAGCAGTGGTGCTGGCA
ACGACGGTACTTCTGCTGTAGCTGCTCAAGTACAGCAGTGGCATATTGGT
ATGAATGAGGGAGGCGTGTAAGTTGGGTACGGGTGTACAGGCAGTCAGAC
CGCAATACGTGGGCCTCCACAAGGTGCCTCATGCCGGGGGAGAGGGTGCT
ACACCTACCTAGTATATCTAATTAGCCAAGTACCAGCGCCGGGTGGATAG
GTTCGCGGTTGGTTGTGGGGTTTCGGTGGACGGGCATGTCCAAAAGACCA
ACACAAGTCTTCTTTTTCTCGCAGGAAGGTTCTTCTCGCGATTATCGATC
GTAATGTGTTCGTAGTTCGTCCGGATCTCAACCCGACGTACCGGACAATT
ATTTTAATCGGTGTGAGTACTGCCAGCAACTTTGTGGCGCTGTAGATCAG
GTGCCATGGGTTGAAAGTGAAACACAGCAGTAGCTTTTCAAGCCGAGAGT
TGGCTTCATAGGGCCCCCAGTGGTCCAACCATTGGGTGCTCTTGGTTTTC
TTTTTATTTCTTTTTATTTTCTTGGGCGTGATTCGCAGGCATCAAGAAAA
GACCTGGTTTATAGGAGCAGTCCCTCTCCGCACACAACACAACAGAAGAA
AACCTCAGGTGGTGGTGCTCCGTTTGCATGTTTTTTGTTTTCGTACACCG
GCAGTGCTTTGAGCACTGGAGGATTGGGAAAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10618:2830..5212-

>mRNA_Ecto-sp13_S_contig10618.575.1 ID=mRNA_Ecto-sp13_S_contig10618.575.1|Name=mRNA_Ecto-sp13_S_contig10618.575.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=873bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10618:2830..5212- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGATTGTCCTGGTGGGACACGTCATCGTCCGAGGAAGCATCCGAGTGG
TCAAAAAGAAGCTCAAGGTTCGAGGGGAGCAGAAGGTGCACCTCGAGCAG
CTCAATCTCACGGAAACACCAGCTCGATCATCCTCGGGGCACTTCACGGT
GGTGCTGAACGGGGTCGGGCCCAACGGAGAGTTCAACTCGTTCGTGTCCC
CCAACGACGACGCCTCCTACGGAGCCGTCTCGCCCGGCCACCTCAAGGGC
ATCTCGAAGCTCATCAGTGGCGCCACCAACTGCAACGTGAGGGACATGGG
GGGCTTCACGGAGGGGGCGGCCGTGCCCTTCGGCGTCCGCATCAGCATGC
CGGACGTGCTCGCGCTGATGCGGCAGTCGTGGGTGTACGAAAGGTTCTGC
CAGACCAAGTGCGGGACCATGACGGTGGTGGTGCTGCGGTCGCAGCACAG
CCGCGGAAAGGACAAGCTGAGGGTGGCCTGGGAGAACTCCGGCAGCCTGG
ACTACACCAAAGCCCAGGTGTACACGGAGAGGGAGTGGAAAAAGACAAAG
TTCGCCGGCAAGACCAAGACGATGCCGGAGGGAATCGCGGACGTGGACAT
GGCACTCGACAAGACCCTGGTGTTCGACTAGGCTGCGCTTGCTGCGTTCG
TCCCCGTCGGTTAATGCGAGAACATGGTACCGGTCAGCGACGAGGGCACG
TGCAAGGCTCTAAAACGAACGAGACACGGGGCGGGACTACAGGTCTTGCT
GGAGGCCATGAGAGAGGAGGTACTTGGACACTACACAGCAGTGGTGCTGG
CAACGACGGTACTTCTGCTGTAGCTGCTCAAGTACAGCAGTGGCATATTG
GTATGAATGAGGGAGGCGTGTAA
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