mRNA_Ecto-sp13_S_contig10612.572.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10612.572.1
Unique NamemRNA_Ecto-sp13_S_contig10612.572.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10612.572.1 vs. uniprot
Match: D7FXF7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXF7_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 5.500e-22
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    1 KKQTTRYRDGKVVTTTGAKVIVETVKPEWDGGSRGKVKTKGKRGKGFV 144
            KK+TTRYRDGKVVTTTGAKVIVETVKPEWDGGSRGKVKTKGKRGKGFV
Sbjct:  271 KKKTTRYRDGKVVTTTGAKVIVETVKPEWDGGSRGKVKTKGKRGKGFV 318
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BLAST of mRNA_Ecto-sp13_S_contig10612.572.1 vs. uniprot
Match: A0A8J4FDD9_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FDD9_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 6.750e-13
Identity = 33/45 (73.33%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   10 TTRYRDGKVVTTTGAKVIVETVKPEWDGGSRGKVKTKGKRGKGFV 144
            T RY DG+VVTT G K I+E    EWDGGSRGKV TKGKRGKGFV
Sbjct:   60 TVRYLDGRVVTTKGEKFIIEKTGEEWDGGSRGKVYTKGKRGKGFV 104
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BLAST of mRNA_Ecto-sp13_S_contig10612.572.1 vs. uniprot
Match: A0A8J4FC95_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FC95_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 1.320e-11
Identity = 33/45 (73.33%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   10 TTRYRDGKVVTTTGAKVIVETVKPEWDGGSRGKVKTKGKRGKGFV 144
            T RY DG+VVTT G K I+E    EWDGGSRGKV TKGKRGKGFV
Sbjct:  251 TVRYLDGRVVTTKGEKFIIEKTGEEWDGGSRGKVYTKGKRGKGFV 295
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BLAST of mRNA_Ecto-sp13_S_contig10612.572.1 vs. uniprot
Match: A0A8J4EUR7_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EUR7_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 2.630e-11
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   10 TTRYRDGKVVTTTGAKVIVETVKPEWDGGSRGKVKTKGKRGKGFV 144
            T RY DG+VVTT G K I+E    +WDGGSRGKV TKGKRGKGFV
Sbjct:  257 TVRYLDGRVVTTKGEKFIIEKTAEDWDGGSRGKVYTKGKRGKGFV 301
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BLAST of mRNA_Ecto-sp13_S_contig10612.572.1 vs. uniprot
Match: D8TN50_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TN50_VOLCA)

HSP 1 Score: 63.9 bits (154), Expect = 8.910e-11
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   16 RYRDGKVVTTTGAKVIVETVKPEWDGGSRGKVKTKGKRGKGFV 144
            RY DG+VV+T G K I+E    EWDGGSRGKV TKGKRGKGF+
Sbjct:  246 RYLDGRVVSTKGEKFIIEKTSEEWDGGSRGKVYTKGKRGKGFI 288
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BLAST of mRNA_Ecto-sp13_S_contig10612.572.1 vs. uniprot
Match: A0A150GC07_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GC07_GONPE)

HSP 1 Score: 62.0 bits (149), Expect = 1.150e-10
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   16 RYRDGKVVTTTGAKVIVETVKPEWDGGSRGKVKTKGKRGKGFV 144
            RY DG+VV+T G K I+E    +WDGGSRGKV TKGKRGKGFV
Sbjct:  124 RYLDGRVVSTKGEKFIIEKTGEDWDGGSRGKVFTKGKRGKGFV 166
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BLAST of mRNA_Ecto-sp13_S_contig10612.572.1 vs. uniprot
Match: A0A4D9D606_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D606_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.000e-10
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:   16 RYRDGKVVTTTGAKVIVETVKPEWDGGSRGKVKTKGKRGKGFV 144
            R+R+G VV + G K +VE + P+WDGGSRGKVKTKGKRG GFV
Sbjct:  317 RFREGVVVASKGEKYVVEKLTPDWDGGSRGKVKTKGKRGPGFV 359
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BLAST of mRNA_Ecto-sp13_S_contig10612.572.1 vs. uniprot
Match: A0A2K3D3I4_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3D3I4_CHLRE)

HSP 1 Score: 61.2 bits (147), Expect = 8.660e-10
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   16 RYRDGKVVTTTGAKVIVETVKPEWDGGSRGKVKTKGKRGKGFV 144
            RY DG+VV+  G K I+E +  EWDGGSRGKV TKGKRGKGF 
Sbjct:  247 RYLDGRVVSNKGEKFIIEKIGEEWDGGSRGKVYTKGKRGKGFT 289
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BLAST of mRNA_Ecto-sp13_S_contig10612.572.1 vs. uniprot
Match: A0A8J9RD22_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RD22_9CHLO)

HSP 1 Score: 61.2 bits (147), Expect = 8.660e-10
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:   16 RYRDGKVVTTTGAKVIVETVKPEWDGGSRGKVKTKGKRGKGFV 144
            RYRDG++V+T G K I+ET+  EW+GGS GKV TKGKRGKG V
Sbjct:  247 RYRDGQLVSTRGEKFIMETISTEWNGGSTGKVYTKGKRGKGVV 289
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BLAST of mRNA_Ecto-sp13_S_contig10612.572.1 vs. uniprot
Match: A0A836BXZ9_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BXZ9_9CHLO)

HSP 1 Score: 61.2 bits (147), Expect = 1.120e-9
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   16 RYRDGKVVTTTGAKVIVETVKPEWDGGSRGKVKTKGKRGKGFV 144
            RY +G+VV+  G K I+E V  EWDGGSRGKV TKGKRGKGF+
Sbjct:  170 RYLEGRVVSNKGEKFIIEKVGEEWDGGSRGKVYTKGKRGKGFI 212
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10612.572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXF7_ECTSI5.500e-2297.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J4FDD9_9CHLO6.750e-1373.33Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A8J4FC95_9CHLO1.320e-1173.33Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A8J4EUR7_9CHLO2.630e-1171.11Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
D8TN50_VOLCA8.910e-1169.77Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
A0A150GC07_GONPE1.150e-1069.77Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A4D9D606_9STRA3.000e-1067.44Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A2K3D3I4_CHLRE8.660e-1067.44Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]
A0A8J9RD22_9CHLO8.660e-1067.44Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
A0A836BXZ9_9CHLO1.120e-967.44Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10612contigEcto-sp13_S_contig10612:4516..5607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score95.9
Seed ortholog evalue5.6e-18
Seed eggNOG ortholog2880.D7FXF7
Model size147
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG OGs2E6I1@1,2SD7J@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_003030.1
Cds size147
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462542.3062148-CDS-Ecto-sp13_S_contig10612:4515..46051681462542.3062148-CDS-Ecto-sp13_S_contig10612:4515..4605Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10612 4516..4605 -
1681462542.3175247-CDS-Ecto-sp13_S_contig10612:5550..56071681462542.3175247-CDS-Ecto-sp13_S_contig10612:5550..5607Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10612 5551..5607 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10612.572.1prot_Ecto-sp13_S_contig10612.572.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10612 4516..5607 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10612.572.1

>prot_Ecto-sp13_S_contig10612.572.1 ID=prot_Ecto-sp13_S_contig10612.572.1|Name=mRNA_Ecto-sp13_S_contig10612.572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=49bp
KKQTTRYRDGKVVTTTGAKVIVETVKPEWDGGSRGKVKTKGKRGKGFV*
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mRNA from alignment at Ecto-sp13_S_contig10612:4516..5607-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10612.572.1 ID=mRNA_Ecto-sp13_S_contig10612.572.1|Name=mRNA_Ecto-sp13_S_contig10612.572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1092bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10612:4516..5607- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGAAGCAGACTACCCGGTACCGAGACGGGAAGGTCGTGACCACCACGGG
TGCTAAGGTAAGAAACCAGGAAGAGCAAGGCATTTTACCCTGTCCCTTGC
TGGCTTGCACCACGTCTACATTCTTCGTCTTCAACGCAGCGAGTCGTCGG
TGGCTGGCTGCTGCTGTGACGTGCTTGCTTTAAGACGAGAGGAGGAAACC
ACCGCCGTGGTTTTTGTGTGCATACGTGTTTTGTTTTCGTCTTTTTCATT
GCGACGTGTGCACGGAGCTTCTTCCTGCTGAACGTGCGGCACAGGATGCC
CAGCAGAACCACATGGAAGAGAAACACTTCTTCCCCGACGACCTGTGTCT
GGCGTACTGTGAAACGCCAGCCGAACCCGGGGCGGCTGTTCCACCCGCGA
TTCCCTCCCATTCTTCGGGGGAGCCAAAAACACGTGTGTGCCAACGACCA
TCAGACCCGTTTGGGACTACCGTAATCGTACGTGTTGTCGCACCCCCGTG
GCGGCGTTTTTCTGTAGCGTATTTCTCCACAACTCCTGTAGGAGGGTGCG
AACACCAACTGATAACTCTCCAGAAAGCCCTTGACGAGATGTTTCCAAAA
CCACCCTTTTCGGAGTTGATGCCTCCCTGGTTGTGGAGAAATACGCTACA
GAAAAACGCTAAGACGGGGGTGCGATGGCACGCACAATTGCGGTAATGCA
AGCTTGAGAGTTTTCCGGGAGAAGTTTTTACCCCTGTCGTGGCAATCAAT
TCGTGGGAGACAAGCCGACCTTGGAGAGAGGGCAAGGTGCTTCATAGCAA
CGTCCTGTACAAGACATCACAATATTTAACACACCACGATTTTTTTTTAC
CTTTTTGGCGGTTACTCCAGGTCGAGTTGGGCGCACACAAACAATCGTAC
CCGCGACCTCTGTCGTAGGTCCGAGGATAGCCACGAGCTCCCCTTCGGCA
ACAACCACCTGTCCTGCTTCTTGGCTGACTTGTGTTTTGTTGCATGCATC
AGGTCATCGTGGAAACTGTCAAGCCGGAGTGGGACGGCGGCTCGAGAGGG
AAGGTCAAGACAAAGGGCAAGCGCGGCAAGGGCTTCGTATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10612:4516..5607-

>mRNA_Ecto-sp13_S_contig10612.572.1 ID=mRNA_Ecto-sp13_S_contig10612.572.1|Name=mRNA_Ecto-sp13_S_contig10612.572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10612:4516..5607- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGAAGCAGACTACCCGGTACCGAGACGGGAAGGTCGTGACCACCACGGG
TGCTAAGGTCATCGTGGAAACTGTCAAGCCGGAGTGGGACGGCGGCTCGA
GAGGGAAGGTCAAGACAAAGGGCAAGCGCGGCAAGGGCTTCGTATGA
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