mRNA_Ecto-sp13_S_contig10607.567.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10607.567.1 vs. uniprot
Match: A0A6H5JXE6_9PHAE (Calcium-transporting ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXE6_9PHAE) HSP 1 Score: 188 bits (478), Expect = 1.360e-53 Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 1
Query: 1 GDELHKPKVIGSATEGALVILAAEWGFNAANVKDTFFNSERDCEYPFNSAKKRSSVLITNPDGTLRLYSKGASETILADCTRHSTQSGEIVDI 279
GDELHKPKVIGSATEGALVILAAEWGFNAANVKDTFFNSERDCEYPFNSAKKRSSVLITNPDGTLRLYSKGASETILADCTRHSTQSGEIVD+
Sbjct: 461 GDELHKPKVIGSATEGALVILAAEWGFNAANVKDTFFNSERDCEYPFNSAKKRSSVLITNPDGTLRLYSKGASETILADCTRHSTQSGEIVDM 553
BLAST of mRNA_Ecto-sp13_S_contig10607.567.1 vs. uniprot
Match: A0A835ZDK6_9STRA (Calcium-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDK6_9STRA) HSP 1 Score: 107 bits (268), Expect = 2.990e-25 Identity = 55/92 (59.78%), Postives = 67/92 (72.83%), Query Frame = 1
Query: 1 GDELHKPKVIGSATEGALVILAAEWGFNAANVKDTFFNSERDCEYPFNSAKKRSSVLITNPDGT---LRLYSKGASETILADCTRHSTQSGE 267
G +LHKPKVIGSATEGALVILA +WGFNA ++K + F+ D EYPFNSAKKRSSVL+T + LRL+ KGASE +L DC + G+
Sbjct: 516 GKQLHKPKVIGSATEGALVILAMDWGFNAVSLKKSLFDPAVDREYPFNSAKKRSSVLVTRKEADARGLRLFCKGASERVLQDCAFFTGPDGK 607
BLAST of mRNA_Ecto-sp13_S_contig10607.567.1 vs. uniprot
Match: A0A7S2VWE4_9STRA (Calcium-transporting ATPase n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VWE4_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 2.800e-22 Identity = 47/91 (51.65%), Postives = 67/91 (73.63%), Query Frame = 1
Query: 1 GDELHKPKVIGSATEGALVILAAEWGFNAANVKDTFFNSERDCEYPFNSAKKRSSVLITNPDGTLRLYSKGASETILADCTRHSTQSGEIV 273
G H+PKV+GSATEGA+V+L +WG + A+++ FF+S RD ++PFNS KKRS+V+I +P+ ++L KGASE IL DCT + +SG V
Sbjct: 472 GKAYHRPKVVGSATEGAMVLLLRKWGIDYASLRKEFFSSTRDMQFPFNSTKKRSTVIICDPN-KVQLLCKGASEVILKDCTHYVDESGAAV 561
BLAST of mRNA_Ecto-sp13_S_contig10607.567.1 vs. uniprot
Match: A0A835ZLB8_9STRA (Calcium-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLB8_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 5.210e-22 Identity = 51/84 (60.71%), Postives = 57/84 (67.86%), Query Frame = 1
Query: 1 GDELHKPKVIGSATEGALVILAAEWGFNAANVKDTFFNSERDCEYPFNSAKKRSSVLITNPDGT----LRLYSKGASETILADC 240
G LHKPKVIGSATEGALVIL +WGFN +K F+ D EYPFNSAKKRSSVL+ +RLY KGASE +L DC
Sbjct: 481 GKVLHKPKVIGSATEGALVILTTDWGFNVVTLKKALFDPAVDREYPFNSAKKRSSVLVXXXXXXXXXGVRLYCKGASERVLGDC 564
BLAST of mRNA_Ecto-sp13_S_contig10607.567.1 vs. uniprot
Match: A0A7S3Y3V0_HETAK (Calcium-transporting ATPase n=5 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3V0_HETAK) HSP 1 Score: 97.1 bits (240), Expect = 1.810e-21 Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 1
Query: 1 GDELHKPKVIGSATEGALVILAAEWGFNAANVKDTFFNSERDCEYPFNSAKKRSSVLITNPDGTLRLYSKGASETILADCTRHSTQSG 264
G L KPK+ GSATEGAL++LA WG + + F+ ERDC +PFNS KKRS+ ++ PDG +RLY KGASE ILA+C + G
Sbjct: 444 GRPLPKPKIQGSATEGALLMLAEAWGVDPVARRAAVFDPERDCAFPFNSTKKRSTAVVVRPDGKVRLYVKGASEIILANCAAKTAAGG 531
BLAST of mRNA_Ecto-sp13_S_contig10607.567.1 vs. uniprot
Match: A0A835YJC8_9STRA (P-type ATPase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJC8_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 6.570e-21 Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 1
Query: 1 GDELHKPKVIGSATEGALVILAAEWGFNAANVKDTFFNSERDCEYPFNSAKKRSSVLITNPD--GTLRLYSKGASETILADCTRHSTQSGE 267
G L KPKVIGSA EGAL +LA +WGFN ++K F+ D YPFN+AK SSVL+T D G LRL+ KGAS +L DC + G+
Sbjct: 4 GKTLQKPKVIGSAIEGALAMLAKDWGFNPNSMKRALFDPNVDLAYPFNAAKSSSSVLVTRKDNSGGLRLFCKGASSHVLKDCAFFTGPDGK 94
BLAST of mRNA_Ecto-sp13_S_contig10607.567.1 vs. uniprot
Match: A0A7S3HU65_9STRA (Calcium-transporting ATPase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HU65_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 4.330e-18 Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 1
Query: 1 GDELHKPKVIGSATEGALVILAAEWGFNAANVKDTFFNSERDCEYPFNSAKKRSSVLITNPDGTLRLYSKGASETILADCTRHSTQSG 264
G L +P +IG+ TEGAL+++ +WGF+ + K FN D + FNSAKKRS+ ++ DG++RLY KGASE IL DCT + +G
Sbjct: 425 GRTLDRPAIIGNKTEGALIMMTNQWGFDHEDFKTKNFNEATDKIFSFNSAKKRSTAIVHRADGSVRLYCKGASEWILKDCTHFLSNAG 512
BLAST of mRNA_Ecto-sp13_S_contig10607.567.1 vs. uniprot
Match: A0A7S3HT93_9STRA (Calcium-transporting ATPase n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HT93_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 4.330e-18 Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 1
Query: 1 GDELHKPKVIGSATEGALVILAAEWGFNAANVKDTFFNSERDCEYPFNSAKKRSSVLITNPDGTLRLYSKGASETILADCTRHSTQSG 264
G L +P +IG+ TEGAL+++ +WGF+ + K FN D + FNSAKKRS+ ++ DG++RLY KGASE IL DCT + +G
Sbjct: 439 GRTLDRPAIIGNKTEGALIMMTNQWGFDHEDFKTKNFNEATDKIFSFNSAKKRSTAIVHRADGSVRLYCKGASEWILKDCTHFLSNAG 526
BLAST of mRNA_Ecto-sp13_S_contig10607.567.1 vs. uniprot
Match: A0A812WBN1_SYMMI (ATP2B1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WBN1_SYMMI) HSP 1 Score: 86.3 bits (212), Expect = 1.050e-17 Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 1
Query: 1 GDELHKPKVIGSATEGALVILAAEWGFNAANVKDTFFNSERDCEYPFNSAKKRSSVLITNPDGTLRLYSKGASETILADCT 243
G LH+P VIGS TEGAL+++A WG+ +K F+ E D + FNSAKKRS+ ++ DG+ RL KGA E +L DCT
Sbjct: 55 GRPLHRPNVIGSKTEGALILMADSWGYKYDELKSAVFHEETDRMFAFNSAKKRSTAVVHRSDGSARLLCKGAPEWVLKDCT 135
BLAST of mRNA_Ecto-sp13_S_contig10607.567.1 vs. uniprot
Match: A0A482SEH8_9ARCH (HAD family hydrolase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEH8_9ARCH) HSP 1 Score: 86.3 bits (212), Expect = 1.090e-17 Identity = 39/89 (43.82%), Postives = 60/89 (67.42%), Query Frame = 1
Query: 1 GDELHKPKVIGSATEGALVILAAEWGFNAANVKDTFFNSERDCEYPFNSAKKRSSVLITNPDGTLRLYSKGASETILADCTRHSTQSGE 267
G+ + +P++IG+ TEGAL+++ WG + VK ++ D Y FNSAKKRS+ ++ PDG++R+Y KGASE IL DCT + + S +
Sbjct: 146 GNVMERPQIIGNKTEGALIMMIRAWGVDYEEVKAKNYHEGTDRVYNFNSAKKRSTAVVHKPDGSVRIYCKGASEWILKDCTHYLSPSSQ 234 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10607.567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10607.567.1 >prot_Ecto-sp13_S_contig10607.567.1 ID=prot_Ecto-sp13_S_contig10607.567.1|Name=mRNA_Ecto-sp13_S_contig10607.567.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=66bp MRRTSKTRSSTRNATASTRSTLPRSGRAFLSPTLTEPCAFTARGQAKRFSback to top mRNA from alignment at Ecto-sp13_S_contig10607:954..2058+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10607.567.1 ID=mRNA_Ecto-sp13_S_contig10607.567.1|Name=mRNA_Ecto-sp13_S_contig10607.567.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10607:954..2058+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10607:954..2058+ >mRNA_Ecto-sp13_S_contig10607.567.1 ID=mRNA_Ecto-sp13_S_contig10607.567.1|Name=mRNA_Ecto-sp13_S_contig10607.567.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10607:954..2058+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |