mRNA_Ecto-sp13_S_contig10607.567.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10607.567.1
Unique NamemRNA_Ecto-sp13_S_contig10607.567.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10607.567.1 vs. uniprot
Match: A0A6H5JXE6_9PHAE (Calcium-transporting ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXE6_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 1.360e-53
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 1
Query:    1 GDELHKPKVIGSATEGALVILAAEWGFNAANVKDTFFNSERDCEYPFNSAKKRSSVLITNPDGTLRLYSKGASETILADCTRHSTQSGEIVDI 279
            GDELHKPKVIGSATEGALVILAAEWGFNAANVKDTFFNSERDCEYPFNSAKKRSSVLITNPDGTLRLYSKGASETILADCTRHSTQSGEIVD+
Sbjct:  461 GDELHKPKVIGSATEGALVILAAEWGFNAANVKDTFFNSERDCEYPFNSAKKRSSVLITNPDGTLRLYSKGASETILADCTRHSTQSGEIVDM 553          
BLAST of mRNA_Ecto-sp13_S_contig10607.567.1 vs. uniprot
Match: A0A835ZDK6_9STRA (Calcium-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDK6_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.990e-25
Identity = 55/92 (59.78%), Postives = 67/92 (72.83%), Query Frame = 1
Query:    1 GDELHKPKVIGSATEGALVILAAEWGFNAANVKDTFFNSERDCEYPFNSAKKRSSVLITNPDGT---LRLYSKGASETILADCTRHSTQSGE 267
            G +LHKPKVIGSATEGALVILA +WGFNA ++K + F+   D EYPFNSAKKRSSVL+T  +     LRL+ KGASE +L DC   +   G+
Sbjct:  516 GKQLHKPKVIGSATEGALVILAMDWGFNAVSLKKSLFDPAVDREYPFNSAKKRSSVLVTRKEADARGLRLFCKGASERVLQDCAFFTGPDGK 607          
BLAST of mRNA_Ecto-sp13_S_contig10607.567.1 vs. uniprot
Match: A0A7S2VWE4_9STRA (Calcium-transporting ATPase n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VWE4_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.800e-22
Identity = 47/91 (51.65%), Postives = 67/91 (73.63%), Query Frame = 1
Query:    1 GDELHKPKVIGSATEGALVILAAEWGFNAANVKDTFFNSERDCEYPFNSAKKRSSVLITNPDGTLRLYSKGASETILADCTRHSTQSGEIV 273
            G   H+PKV+GSATEGA+V+L  +WG + A+++  FF+S RD ++PFNS KKRS+V+I +P+  ++L  KGASE IL DCT +  +SG  V
Sbjct:  472 GKAYHRPKVVGSATEGAMVLLLRKWGIDYASLRKEFFSSTRDMQFPFNSTKKRSTVIICDPN-KVQLLCKGASEVILKDCTHYVDESGAAV 561          
BLAST of mRNA_Ecto-sp13_S_contig10607.567.1 vs. uniprot
Match: A0A835ZLB8_9STRA (Calcium-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLB8_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 5.210e-22
Identity = 51/84 (60.71%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    1 GDELHKPKVIGSATEGALVILAAEWGFNAANVKDTFFNSERDCEYPFNSAKKRSSVLITNPDGT----LRLYSKGASETILADC 240
            G  LHKPKVIGSATEGALVIL  +WGFN   +K   F+   D EYPFNSAKKRSSVL+          +RLY KGASE +L DC
Sbjct:  481 GKVLHKPKVIGSATEGALVILTTDWGFNVVTLKKALFDPAVDREYPFNSAKKRSSVLVXXXXXXXXXGVRLYCKGASERVLGDC 564          
BLAST of mRNA_Ecto-sp13_S_contig10607.567.1 vs. uniprot
Match: A0A7S3Y3V0_HETAK (Calcium-transporting ATPase n=5 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3V0_HETAK)

HSP 1 Score: 97.1 bits (240), Expect = 1.810e-21
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    1 GDELHKPKVIGSATEGALVILAAEWGFNAANVKDTFFNSERDCEYPFNSAKKRSSVLITNPDGTLRLYSKGASETILADCTRHSTQSG 264
            G  L KPK+ GSATEGAL++LA  WG +    +   F+ ERDC +PFNS KKRS+ ++  PDG +RLY KGASE ILA+C   +   G
Sbjct:  444 GRPLPKPKIQGSATEGALLMLAEAWGVDPVARRAAVFDPERDCAFPFNSTKKRSTAVVVRPDGKVRLYVKGASEIILANCAAKTAAGG 531          
BLAST of mRNA_Ecto-sp13_S_contig10607.567.1 vs. uniprot
Match: A0A835YJC8_9STRA (P-type ATPase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJC8_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 6.570e-21
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 1
Query:    1 GDELHKPKVIGSATEGALVILAAEWGFNAANVKDTFFNSERDCEYPFNSAKKRSSVLITNPD--GTLRLYSKGASETILADCTRHSTQSGE 267
            G  L KPKVIGSA EGAL +LA +WGFN  ++K   F+   D  YPFN+AK  SSVL+T  D  G LRL+ KGAS  +L DC   +   G+
Sbjct:    4 GKTLQKPKVIGSAIEGALAMLAKDWGFNPNSMKRALFDPNVDLAYPFNAAKSSSSVLVTRKDNSGGLRLFCKGASSHVLKDCAFFTGPDGK 94          
BLAST of mRNA_Ecto-sp13_S_contig10607.567.1 vs. uniprot
Match: A0A7S3HU65_9STRA (Calcium-transporting ATPase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HU65_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.330e-18
Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    1 GDELHKPKVIGSATEGALVILAAEWGFNAANVKDTFFNSERDCEYPFNSAKKRSSVLITNPDGTLRLYSKGASETILADCTRHSTQSG 264
            G  L +P +IG+ TEGAL+++  +WGF+  + K   FN   D  + FNSAKKRS+ ++   DG++RLY KGASE IL DCT   + +G
Sbjct:  425 GRTLDRPAIIGNKTEGALIMMTNQWGFDHEDFKTKNFNEATDKIFSFNSAKKRSTAIVHRADGSVRLYCKGASEWILKDCTHFLSNAG 512          
BLAST of mRNA_Ecto-sp13_S_contig10607.567.1 vs. uniprot
Match: A0A7S3HT93_9STRA (Calcium-transporting ATPase n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HT93_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.330e-18
Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    1 GDELHKPKVIGSATEGALVILAAEWGFNAANVKDTFFNSERDCEYPFNSAKKRSSVLITNPDGTLRLYSKGASETILADCTRHSTQSG 264
            G  L +P +IG+ TEGAL+++  +WGF+  + K   FN   D  + FNSAKKRS+ ++   DG++RLY KGASE IL DCT   + +G
Sbjct:  439 GRTLDRPAIIGNKTEGALIMMTNQWGFDHEDFKTKNFNEATDKIFSFNSAKKRSTAIVHRADGSVRLYCKGASEWILKDCTHFLSNAG 526          
BLAST of mRNA_Ecto-sp13_S_contig10607.567.1 vs. uniprot
Match: A0A812WBN1_SYMMI (ATP2B1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WBN1_SYMMI)

HSP 1 Score: 86.3 bits (212), Expect = 1.050e-17
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    1 GDELHKPKVIGSATEGALVILAAEWGFNAANVKDTFFNSERDCEYPFNSAKKRSSVLITNPDGTLRLYSKGASETILADCT 243
            G  LH+P VIGS TEGAL+++A  WG+    +K   F+ E D  + FNSAKKRS+ ++   DG+ RL  KGA E +L DCT
Sbjct:   55 GRPLHRPNVIGSKTEGALILMADSWGYKYDELKSAVFHEETDRMFAFNSAKKRSTAVVHRSDGSARLLCKGAPEWVLKDCT 135          
BLAST of mRNA_Ecto-sp13_S_contig10607.567.1 vs. uniprot
Match: A0A482SEH8_9ARCH (HAD family hydrolase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEH8_9ARCH)

HSP 1 Score: 86.3 bits (212), Expect = 1.090e-17
Identity = 39/89 (43.82%), Postives = 60/89 (67.42%), Query Frame = 1
Query:    1 GDELHKPKVIGSATEGALVILAAEWGFNAANVKDTFFNSERDCEYPFNSAKKRSSVLITNPDGTLRLYSKGASETILADCTRHSTQSGE 267
            G+ + +P++IG+ TEGAL+++   WG +   VK   ++   D  Y FNSAKKRS+ ++  PDG++R+Y KGASE IL DCT + + S +
Sbjct:  146 GNVMERPQIIGNKTEGALIMMIRAWGVDYEEVKAKNYHEGTDRVYNFNSAKKRSTAVVHKPDGSVRIYCKGASEWILKDCTHYLSPSSQ 234          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10607.567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXE6_9PHAE1.360e-5398.92Calcium-transporting ATPase n=2 Tax=Ectocarpus Tax... [more]
A0A835ZDK6_9STRA2.990e-2559.78Calcium-transporting ATPase n=1 Tax=Tribonema minu... [more]
A0A7S2VWE4_9STRA2.800e-2251.65Calcium-transporting ATPase n=1 Tax=Triparma pacif... [more]
A0A835ZLB8_9STRA5.210e-2260.71Calcium-transporting ATPase n=1 Tax=Tribonema minu... [more]
A0A7S3Y3V0_HETAK1.810e-2152.27Calcium-transporting ATPase n=5 Tax=Heterosigma ak... [more]
A0A835YJC8_9STRA6.570e-2151.65P-type ATPase (Fragment) n=1 Tax=Tribonema minus T... [more]
A0A7S3HU65_9STRA4.330e-1846.59Calcium-transporting ATPase n=1 Tax=Spumella elong... [more]
A0A7S3HT93_9STRA4.330e-1846.59Calcium-transporting ATPase n=2 Tax=Spumella elong... [more]
A0A812WBN1_SYMMI1.050e-1749.38ATP2B1 protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A482SEH8_9ARCH1.090e-1743.82HAD family hydrolase n=1 Tax=archaeon TaxID=190666... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10607contigEcto-sp13_S_contig10607:954..2058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size280
Hectar predicted targeting categoryother localisation
Exons3
Cds size198
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462541.9251463-UTR-Ecto-sp13_S_contig10607:953..10351681462541.9251463-UTR-Ecto-sp13_S_contig10607:953..1035Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10607 954..1035 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462541.9335332-CDS-Ecto-sp13_S_contig10607:1035..10551681462541.9335332-CDS-Ecto-sp13_S_contig10607:1035..1055Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10607 1036..1055 +
1681462541.9414244-CDS-Ecto-sp13_S_contig10607:1525..16491681462541.9414244-CDS-Ecto-sp13_S_contig10607:1525..1649Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10607 1526..1649 +
1681462541.9492893-CDS-Ecto-sp13_S_contig10607:2004..20581681462541.9492893-CDS-Ecto-sp13_S_contig10607:2004..2058Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10607 2005..2058 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10607.567.1prot_Ecto-sp13_S_contig10607.567.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10607 1036..2058 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10607.567.1

>prot_Ecto-sp13_S_contig10607.567.1 ID=prot_Ecto-sp13_S_contig10607.567.1|Name=mRNA_Ecto-sp13_S_contig10607.567.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=66bp
MRRTSKTRSSTRNATASTRSTLPRSGRAFLSPTLTEPCAFTARGQAKRFS
RTARATRPNPGRSWT*
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mRNA from alignment at Ecto-sp13_S_contig10607:954..2058+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10607.567.1 ID=mRNA_Ecto-sp13_S_contig10607.567.1|Name=mRNA_Ecto-sp13_S_contig10607.567.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10607:954..2058+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGACGAGCTGCACAAGCCGAAGGTGATCGGTAGCGCCACCGAGGGGGC CCTCGTCATCCTCGCTGCGGAGTGGGGCTTCAATGCGGCGAACGTCAAAG ACGTGAGTTGGGAGCAGCGCATAGAGAGTTGAGAGCGGCTAGACCTCAAA ATAACCGGTACTAATCAGAGTATGAAGGAACTTCAATATTCCATCTCTTG TCACGCGATTGCAGTACCCGCAACATCACCGGGCACTGGCGCCTCTGCAA CCAGCACTATTCTGTGATCCCCACTTTGCCGCGTGGTGGTCTATACTATT TGCGACGACCACAGCTCCGAGAAATTGTTGGGGTGATACAGGTGTGGTTT CGTTGGTGTCGCATTGAAAACCGTTCTGGTCTCTCTGCCCAGTGCTTCCA TCTCTCCGTGCCGATCTATCACTTTGATGCGGTCGATTCCCGTTGTCTGA GGCTATCTTACCCGAAAGATGGTGTGCTAGTAGGATCATGTCTCGTGCGC GTCGTCCCCTTACATCCCCCGATAACCCTAACCGTCCCCGCGCCCGCGTT TTCCCACCGTCTCCGCCTTCAGACGTTCTTCAACTCGGAACGCGACTGCG AGTACCCGTTCAACTCTGCCAAGAAGCGGTCGAGCGTTCTTATCACCAAC CCTGACGGAACCCTGCGCCTTTACAGCAAGGGGGCAAGCGAAACGAGTAA GTAAAAGTCTAGTCGAATCTGAATCTCCGTGTGACGTTGAGTAACACCCC CCAAAAAACGGACTTGTTGCCTCGTCCTCGGACTGTGGGGGTGCGAGGTC GATGGTGTAGATGAGTACACGCCCCTCCACCCCCCGCCCCCCGGCCATTC TCTAGTCGATTGTGGCGGAAAGACATGCCTCCACAGGCGTACAAGTATTT TCGAGGGAGTTGGTTACCCCCGTCTCCTCCCTCAACGAATATGCTTTCGA ACGATGGTCATCGTTCCGGCTTCACGTCTAAAATCTAACGCAAAGGCGAT CCTGTCGTCTTGACTTGGACCCTTTCTCCTCCTCCAAAAAATGGGCACCA GTTCTCGCGGACTGCACGCGCCACTCGACCCAATCCGGGGAGATCGTGGA CATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10607:954..2058+

>mRNA_Ecto-sp13_S_contig10607.567.1 ID=mRNA_Ecto-sp13_S_contig10607.567.1|Name=mRNA_Ecto-sp13_S_contig10607.567.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10607:954..2058+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGCGAACGTCAAAGACACGTTCTTCAACTCGGAACGCGACTGCGAG
TACCCGTTCAACTCTGCCAAGAAGCGGTCGAGCGTTCTTATCACCAACCC
TGACGGAACCCTGCGCCTTTACAGCAAGGGGGCAAGCGAAACGATTCTCG
CGGACTGCACGCGCCACTCGACCCAATCCGGGGAGATCGTGGACATAA
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