mRNA_Ecto-sp13_S_contig10605.564.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10605.564.1
Unique NamemRNA_Ecto-sp13_S_contig10605.564.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10605.564.1 vs. uniprot
Match: A0A6H5JK57_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK57_9PHAE)

HSP 1 Score: 377 bits (968), Expect = 2.010e-127
Identity = 196/252 (77.78%), Postives = 215/252 (85.32%), Query Frame = 2 
Query:  158 ETQVYVPAVLKAKLEAVQTEGKTLEDVEEEVVRLCAGEGAILSTAKSTRCRDGATDRVDMKKLICTRGGKSRQAEYETSLDTAPGVLRRNVKGSARIGCPFEVSVRHAKTHRWPKISNMKLKHNHSVDRNAIDVKVRLASKLTEEQLGQVKQMTSHGMKPKEVTKAMKALHEDSDIDINKRAVQNAAATVHGAEKPRDAADAYEEVMAATADGGVCEIKMDDSGRLTHIWWQTREQVG--RRWRFGIGTVTL 907
            ETQVY PAVLK KLEAVQTEGK LEDV EEVVR CA EG +LSTAKSTRCRDG TDRVDMKKLICTRGG SRQ E+E  LDT PGV+RRN KGSAR GC FEVSVRHAK+H  PKI+NMKL HNH VDR A+ VK+RLA KLTEEQ GQV++MTS GMKPK V +A++ALHEDSDI+IN+RAVQN AA+VHGAEKPRDAADAYEEVMA TADGGVCEIKMDDSGRLTHIWWQTREQV    R+R  +G + +
Sbjct:    9 ETQVYDPAVLKTKLEAVQTEGKILEDVVEEVVRTCAIEGVVLSTAKSTRCRDGGTDRVDMKKLICTRGGGSRQLEHEARLDTEPGVIRRNRKGSARTGCQFEVSVRHAKSHPRPKITNMKLGHNHVVDRQAMAVKLRLAGKLTEEQRGQVEKMTSKGMKPKAVHEAIQALHEDSDIEINRRAVQNVAASVHGAEKPRDAADAYEEVMAVTADGGVCEIKMDDSGRLTHIWWQTREQVALWNRYRMPLGVLAV 260
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10605.564.1 vs. uniprot
Match: A0A6H5JUZ2_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ2_9PHAE)

HSP 1 Score: 390 bits (1002), Expect = 1.140e-126
Identity = 201/225 (89.33%), Postives = 207/225 (92.00%), Query Frame = 2 
Query:  215 EGKTLEDVEEEVVRLCAGEGAILSTAKSTRCRDGATDRVDMKKLICTRGGKSRQAEYETSLDTAPGVLRRNVKGSARIGCPFEVSVRHAKTHRWPKISNMKLKHNHSVDRNAIDVKVRLASKLTEEQLGQVKQMTSHGMKPKEVTKAMKALHEDSDIDINKRAVQNAAATVHGAEKPRDAADAYEEVMAATADGGVCEIKMDDSGRLTHIWWQTREQVGRRWRFG 889
            EGKTLEDVEEEVVRLC GEGAILSTAKSTRCRDGATDRVDMKKLICTRGGKSRQ EYE SLDTAPGV RRNVK SAR  CP    VRHAK+HRWP+ISNMKL HNHSVDR AIDVK+RLASKLTEEQLGQV+QMTSHGMKPKEVTKAMK LHEDSDIDINKRAVQNAAATVHGAEKPRDAADAYEEVMAATADGG+CEIKMDDSGRLTHIWWQTREQV    R+G
Sbjct:   78 EGKTLEDVEEEVVRLCVGEGAILSTAKSTRCRDGATDRVDMKKLICTRGGKSRQLEYEASLDTAPGVQRRNVKRSARTDCP----VRHAKSHRWPRISNMKLTHNHSVDRKAIDVKLRLASKLTEEQLGQVQQMTSHGMKPKEVTKAMKVLHEDSDIDINKRAVQNAAATVHGAEKPRDAADAYEEVMAATADGGLCEIKMDDSGRLTHIWWQTREQVALWNRYG 298
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10605.564.1 vs. uniprot
Match: A0A6H5L586_9PHAE (FAR1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L586_9PHAE)

HSP 1 Score: 367 bits (943), Expect = 6.150e-126
Identity = 190/202 (94.06%), Postives = 194/202 (96.04%), Query Frame = 2 
Query:  167 VYVPAVLKAKLEAVQTEGKTLEDVEEEVVRLCAGEGAILSTAKSTRCRDGATDRVDMKKLICTRGGKSRQAEYETSLDTAPGVLRRNVKGSARIGCPFEVSVRHAKTHRWPKISNMKLKHNHSVDRNAIDVKVRLASKLTEEQLGQVKQMTSHGMKPKEVTKAMKALHEDSDIDINKRAVQNAAATVHGAEKPRDAADAYEE 772
            VYVPAVLKAKLEAVQTEGKTLEDVEEEVV  CAGEGAILSTAKSTRCRDGATDRVDMKKLICTRGGKSRQ EYE SLDTAPGV RRNVKGSAR GCPFEVSVRHAK+HRWP+ISNMKL HNHSVDR AIDVK+RLASKLTEEQLGQVKQMTSHGMKPKEVTKAMKA+HEDSDIDINKRAVQNAAATVHGAEKPRDAADAYEE
Sbjct:    9 VYVPAVLKAKLEAVQTEGKTLEDVEEEVVSWCAGEGAILSTAKSTRCRDGATDRVDMKKLICTRGGKSRQLEYEASLDTAPGVQRRNVKGSARTGCPFEVSVRHAKSHRWPRISNMKLTHNHSVDRKAIDVKLRLASKLTEEQLGQVKQMTSHGMKPKEVTKAMKAIHEDSDIDINKRAVQNAAATVHGAEKPRDAADAYEE 210
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10605.564.1 vs. uniprot
Match: A0A6H5JAS6_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAS6_9PHAE)

HSP 1 Score: 368 bits (944), Expect = 1.130e-121
Identity = 190/252 (75.40%), Postives = 213/252 (84.52%), Query Frame = 2 
Query:  158 ETQVYVPAVLKAKLEAVQTEGKTLEDVEEEVVRLCAGEGAILSTAKSTRCRDGATDRVDMKKLICTRGGKSRQAEYETSLDTAPGVLRRNVKGSARIGCPFEVSVRHAKTHRWPKISNMKLKHNHSVDRNAIDVKVRLASKLTEEQLGQVKQMTSHGMKPKEVTKAMKALHEDSDIDINKRAVQNAAATVHGAEKPRDAADAYEEVMAATADGGVCEIKMDDSGRLTHIWWQTREQVG--RRWRFGIGTVTL 907
            ETQVY PA+L  +LEAVQTEGK LEDV EEVVR CA EG +LSTAKSTRCRDG TDRVDMKKLICTRGG SRQ E+E  LDT PGV+RRN KGSAR GC FEVSVRHA +H  PKI+N+KL HNH VDR A+ VK+RLA KLTEEQ GQV++MTS GMKPK V +A++ALHEDSDI+IN+RAVQN AA+VHGAEKPRDAADAYEEVMA TADGGVCEIKMDDSGRLTHIWWQTREQ+    R+R  +G + +
Sbjct:    9 ETQVYDPALLTTELEAVQTEGKILEDVVEEVVRTCAFEGVVLSTAKSTRCRDGGTDRVDMKKLICTRGGGSRQLEHEARLDTEPGVIRRNRKGSARTGCQFEVSVRHANSHPRPKITNIKLGHNHVVDRQAMAVKLRLAGKLTEEQRGQVEKMTSKGMKPKAVHEAIQALHEDSDIEINRRAVQNVAASVHGAEKPRDAADAYEEVMAVTADGGVCEIKMDDSGRLTHIWWQTREQMALWNRYRMPLGVLAV 260
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10605.564.1 vs. uniprot
Match: A0A6H5JNB0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNB0_9PHAE)

HSP 1 Score: 370 bits (949), Expect = 9.320e-120
Identity = 195/256 (76.17%), Postives = 215/256 (83.98%), Query Frame = 2 
Query:  158 ETQVYVPAVLKAKLEAVQTEGKTLEDVEEEVVRLCAGEGAILSTAKSTRCRDGATDRVDMKKLICTRGGKSRQAEYETSLDTAPGVLRRNVKGSARIGCPFEVSVRHAKTHRWPKISNMKLKHNHSVDRNAIDVKVRLASKLTEEQLGQVKQMTSH----GMKPKEVTKAMKALHEDSDIDINKRAVQNAAATVHGAEKPRDAADAYEEVMAATADGGVCEIKMDDSGRLTHIWWQTREQVG--RRWRFGIGTVTL 907
            ETQVY  AVLK KLEAVQTEGKTLEDV EEVVR CA EG +LSTAKSTRCRDG TDRVDMKKLICTRGG SRQ E+E  LDT PGV+RRN KGSAR GC FEVSVRHAK+H  PKI+NMKL HNH VDR A+ VK+RLA KLTEEQ GQV++MTS     GMKPK V +A++ALHEDSDI+IN+RAVQN AA+VHGAEKPRDAADAYEEVMA TADGGVCEIKMDDSGRLTHIWWQTREQ+    R+R  +G + +
Sbjct:    9 ETQVYDSAVLKTKLEAVQTEGKTLEDVVEEVVRTCAIEGVVLSTAKSTRCRDGGTDRVDMKKLICTRGGGSRQLEHEARLDTEPGVIRRNRKGSARTGCQFEVSVRHAKSHPRPKITNMKLGHNHVVDRQAMAVKLRLAGKLTEEQRGQVEKMTSEEIERGMKPKAVHEAIQALHEDSDIEINRRAVQNVAASVHGAEKPRDAADAYEEVMAVTADGGVCEIKMDDSGRLTHIWWQTREQMALWNRYRMPLGVLAV 264
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10605.564.1 vs. uniprot
Match: A0A6H5KZF1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF1_9PHAE)

HSP 1 Score: 357 bits (915), Expect = 2.660e-116
Identity = 205/272 (75.37%), Postives = 222/272 (81.62%), Query Frame = 2 
Query:   74 AGGFVGYPAQAHPVQQXXXXXXXXXXXXETQVYVPAVLKAKLEAVQTEGKTLEDVEEEVVRLCAGEGAILSTAKSTRCRDGATDRVDMKKLICTRGGKSRQAEYETSLDTAPGVLRRNVKGSARIGCPFEVSVRHAKTHRWPKISNMKLKHNHSVDRNAIDVKVRLASKLTEEQLGQVKQMTSHGMKPKEVTKAMKALHEDSDIDINKRAVQNAAATVHGAEKPRDAADAYEEVMAATADGGVCEIKMDDSGRLTHIWWQTREQVGRRWRFG 889
            AG F GYP QAHP QQXXXXXXXXXXXXETQV  PAV+K KLEAV TEGKT EDV EEVVR C GEGAILSTAKSTRCRDGATDRVD+KKLICTRGG  RQ EYE  LDT             R+     VS+RHA+TH+WPKISNMKL+HNH V+R AIDVK+RLA KLTEE+ GQV++M S GMKPK VT+AMKALHEDSD+DINKRAVQNAAA+VHGAEKP DAADAYEEVM  TADGGVCEIKMDDSG LTHIWWQ+REQV    R+G
Sbjct:   30 AGVFAGYPVQAHPAQQXXXXXXXXXXXXETQVNNPAVVKTKLEAVPTEGKTPEDVVEEVVRTCTGEGAILSTAKSTRCRDGATDRVDIKKLICTRGGGCRQLEYEARLDT-------------RL-----VSIRHARTHQWPKISNMKLEHNHVVNREAIDVKLRLAGKLTEERRGQVEKMISKGMKPKAVTEAMKALHEDSDVDINKRAVQNAAASVHGAEKPGDAADAYEEVMVVTADGGVCEIKMDDSGCLTHIWWQSREQVALWNRYG 283
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10605.564.1 vs. uniprot
Match: A0A6H5JDU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU5_9PHAE)

HSP 1 Score: 316 bits (809), Expect = 3.080e-105
Identity = 189/237 (79.75%), Postives = 192/237 (81.01%), Query Frame = 2 
Query:   41 PAPVGTPDAGAAGGFVGYPAQAHPVQQXXXXXXXXXXXXETQVYVPAVLKAKLEAVQTEGKTLEDVEEEVVRLCAGEGAILSTAKSTRCRDGATDRVDMKKLICTRGGKSRQAEYETSLDTAPGVLRRNVKGSARIGCPFEVSVRHAKTHRWPKISNMKLKHNHSVDRNAIDVKVRLASKLTEEQLGQVKQMTSHGMKPKEVTKAMKALHEDSDIDINKRAVQNAAATVHGAEKPRD 751
            PA  G  DAGAAG F GYP QAHPVQQXXXXXXXXXXXXETQVYVPAVLKA LEAVQTEGKTLEDVEEEVVRLCAGEGAILSTAKST                              SLDTAPGVLRRNVKGSAR GCPFEVSVRHAKTHRWPKISNMKLKHNHSVDRNAIDV+VRLASKLTEEQLGQVKQMTSHGMKPKEVTKAMKALHED DIDINKRAVQNAAATV    + R+
Sbjct:    9 PASYGARDAGAAGAFAGYPVQAHPVQQXXXXXXXXXXXXETQVYVPAVLKANLEAVQTEGKTLEDVEEEVVRLCAGEGAILSTAKST------------------------------SLDTAPGVLRRNVKGSARTGCPFEVSVRHAKTHRWPKISNMKLKHNHSVDRNAIDVQVRLASKLTEEQLGQVKQMTSHGMKPKEVTKAMKALHEDGDIDINKRAVQNAAATVRTGRRSRE 215
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10605.564.1 vs. uniprot
Match: A0A6H5KUA5_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA5_9PHAE)

HSP 1 Score: 308 bits (790), Expect = 3.550e-98
Identity = 160/206 (77.67%), Postives = 167/206 (81.07%), Query Frame = 2 
Query:  272 GAILSTAKSTRCRDGATDRVDMKKLICTRGGKSRQAEYETSLDTAPGVLRRNVKGSARIGCPFEVSVRHAKTHRWPKISNMKLKHNHSVDRNAIDVKVRLASKLTEEQLGQVKQMTSHGMKPKEVTKAMKALHEDSDIDINKRAVQNAAATVHGAEKPRDAADAYEEVMAATADGGVCEIKMDDSGRLTHIWWQTREQVGRRWRFG 889
            G I   A    C  G        +   T  G   Q     + +TAPGVLRRNVKGSAR GCPFEVSVRHAKTHRWPKISNMKLKHNHSVDRNAIDV++RLASKLTEEQLGQV QMTSHGMKPKEVTKAMKALHED DIDINKRAVQNAAATVHGAEKPRDAADAYEEV+AATADGGVCEIKMDDSGRLTHIWWQTREQV    R+G
Sbjct:   42 GVIARNASIQCCSAGLLPCTSPPRTATTAAGIDHQPSAGNAGETAPGVLRRNVKGSARTGCPFEVSVRHAKTHRWPKISNMKLKHNHSVDRNAIDVQLRLASKLTEEQLGQVNQMTSHGMKPKEVTKAMKALHEDGDIDINKRAVQNAAATVHGAEKPRDAADAYEEVLAATADGGVCEIKMDDSGRLTHIWWQTREQVALWNRYG 247
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10605.564.1 vs. uniprot
Match: A0A6H5KWS5_9PHAE (FAR1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS5_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 2.770e-80
Identity = 125/134 (93.28%), Postives = 129/134 (96.27%), Query Frame = 2 
Query:  158 ETQVYVPAVLKAKLEAVQTEGKTLEDVEEEVVRLCAGEGAILSTAKSTRCRDGATDRVDMKKLICTRGGKSRQAEYETSLDTAPGVLRRNVKGSARIGCPFEVSVRHAKTHRWPKISNMKLKHNHSVDRNAIDV 559
            ETQVYVPAVLKAKLEAVQTEG+TLEDVEEEVV LCAGEGAILSTAKSTRCRDGATDRVDMKKLICTRGGKSRQAEYETSLDTAPGV RRNVKGSAR GCPFEV+VRHAK+HRWP+ISNMKL HNHSVDR AIDV
Sbjct:   44 ETQVYVPAVLKAKLEAVQTEGRTLEDVEEEVVSLCAGEGAILSTAKSTRCRDGATDRVDMKKLICTRGGKSRQAEYETSLDTAPGVQRRNVKGSARTGCPFEVNVRHAKSHRWPRISNMKLTHNHSVDRKAIDV 177
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10605.564.1 vs. uniprot
Match: A0A6H5L5Y4_9PHAE (FAR1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Y4_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 7.180e-76
Identity = 121/132 (91.67%), Postives = 125/132 (94.70%), Query Frame = 2 
Query:  170 YVPAVLKAKLEAVQTEGKTLEDVEEEVVRLCAGEGAILSTAKSTRCRDGATDRVDMKKLICTRGGKSRQAEYETSLDTAPGVLRRNVKGSARIGCPFEVSVRHAKTHRWPKISNMKLKHNHSVDRNAIDVKV 565
            YV AVLKAKLEAVQTEGKTLEDVEEEV R CAGEGAILSTAKSTRCRDGATDRV M+KLIC+RGGKSRQ EYE SLDTAPGVLRRNVKGSAR GCPFEVSVRHAK+HRWPKISNMKLKHNHSVDRNAIDV+V
Sbjct:   79 YVLAVLKAKLEAVQTEGKTLEDVEEEVARWCAGEGAILSTAKSTRCRDGATDRVGMRKLICSRGGKSRQLEYEASLDTAPGVLRRNVKGSARTGCPFEVSVRHAKSHRWPKISNMKLKHNHSVDRNAIDVQV 210
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10605.564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JK57_9PHAE2.010e-12777.78MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JUZ2_9PHAE1.140e-12689.33SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L586_9PHAE6.150e-12694.06FAR1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JAS6_9PHAE1.130e-12175.40MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JNB0_9PHAE9.320e-12076.17SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KZF1_9PHAE2.660e-11675.37MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JDU5_9PHAE3.080e-10579.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUA5_9PHAE3.550e-9877.67MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KWS5_9PHAE2.770e-8093.28FAR1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L5Y4_9PHAE7.180e-7691.67FAR1 domain-containing protein n=1 Tax=Ectocarpus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10605contigEcto-sp13_S_contig10605:1511..3817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score111.3
Seed ortholog evalue8.3e-22
Seed eggNOG ortholog2880.D8LU83
Preferred nameFHY3
Model size955
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007154,GO:0007165,GO:0007602,GO:0007623,GO:0008150,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009585,GO:0009605,GO:0009628,GO:0009639,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010017,GO:0010018,GO:0010218,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0023052,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0042752,GO:0042753,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0048511,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051606,GO:0051716,GO:0060255,GO:0065007,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071490,GO:0080090,GO:0104004,GO:0140110,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons7
EggNOG free text desc.MULE transposase domain
EggNOG OGs2CMBY@1,2QPXR@2759
Cds size951
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10605.564.1prot_Ecto-sp13_S_contig10605.564.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10605 1515..3817 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462541.7430007-UTR-Ecto-sp13_S_contig10605:1510..15141681462541.7430007-UTR-Ecto-sp13_S_contig10605:1510..1514Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10605 1511..1514 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462541.7538886-CDS-Ecto-sp13_S_contig10605:1514..16761681462541.7538886-CDS-Ecto-sp13_S_contig10605:1514..1676Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10605 1515..1676 +
1681462541.7627695-CDS-Ecto-sp13_S_contig10605:1955..21931681462541.7627695-CDS-Ecto-sp13_S_contig10605:1955..2193Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10605 1956..2193 +
1681462541.772707-CDS-Ecto-sp13_S_contig10605:2370..24291681462541.772707-CDS-Ecto-sp13_S_contig10605:2370..2429Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10605 2371..2429 +
1681462541.7818391-CDS-Ecto-sp13_S_contig10605:2677..28341681462541.7818391-CDS-Ecto-sp13_S_contig10605:2677..2834Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10605 2678..2834 +
1681462541.7909572-CDS-Ecto-sp13_S_contig10605:3029..31811681462541.7909572-CDS-Ecto-sp13_S_contig10605:3029..3181Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10605 3030..3181 +
1681462541.8075783-CDS-Ecto-sp13_S_contig10605:3422..35261681462541.8075783-CDS-Ecto-sp13_S_contig10605:3422..3526Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10605 3423..3526 +
1681462541.8263834-CDS-Ecto-sp13_S_contig10605:3738..38171681462541.8263834-CDS-Ecto-sp13_S_contig10605:3738..3817Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10605 3739..3817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10605.564.1

>prot_Ecto-sp13_S_contig10605.564.1 ID=prot_Ecto-sp13_S_contig10605.564.1|Name=mRNA_Ecto-sp13_S_contig10605.564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=317bp
MLSPPTGLPLGTPAPVGTPDAGAAGGFVGYPAQAHPVQQQQQQTLTTSPP
PETQVYVPAVLKAKLEAVQTEGKTLEDVEEEVVRLCAGEGAILSTAKSTR
CRDGATDRVDMKKLICTRGGKSRQAEYETSLDTAPGVLRRNVKGSARIGC
PFEVSVRHAKTHRWPKISNMKLKHNHSVDRNAIDVKVRLASKLTEEQLGQ
VKQMTSHGMKPKEVTKAMKALHEDSDIDINKRAVQNAAATVHGAEKPRDA
ADAYEEVMAATADGGVCEIKMDDSGRLTHIWWQTREQVGRRWRFGIGTVT
LRSTTTPPSRTDTGCPS
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mRNA from alignment at Ecto-sp13_S_contig10605:1511..3817+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10605.564.1 ID=mRNA_Ecto-sp13_S_contig10605.564.1|Name=mRNA_Ecto-sp13_S_contig10605.564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2307bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10605:1511..3817+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCATGCTTTCACCTCCCACTGGTCTACCGTTGGGGACCCCGGCCCCTG
TGGGTACTCCCGATGCTGGGGCCGCCGGAGGTTTTGTGGGCTACCCTGCA
CAAGCCCACCCCGTACAGCAACAACAGCAGCAGACATTGACCACCAGCCC
TCCGCCGGAAACGCAGGTGACAATGCCCGTATTGTTGCACCCTCGTGCAC
GATGGGGAGGCTGCGATGGCATGGGTCAACGACGCCATGCATGTGTTAGT
CTGGGTGTACCTACAAGAGTGTTCATTCTGTGTGACTTTGCCCGCGGCAT
TCGCCTGCTCGGTGCTGTAGGACAGTTATCCAGTTCGGGTATTTTTGTGC
TCGTTGCTCTAGCATCCCGCTTTGTGCTGTAGAATCGTCCTCACCCCGAG
GCACGTGCCGCTGTCTCACCCGTGGTATTGCGGTTTGAACACTAGGTGTA
CGTTCCAGCTGTGTTAAAGGCGAAGCTGGAGGCAGTGCAGACGGAGGGAA
AGACGCTTGAGGACGTGGAGGAGGAGGTGGTGAGGTTGTGCGCCGGTGAA
GGGGCGATCCTTTCTACCGCGAAATCGACGAGGTGTCGCGACGGCGCAAC
GGATCGTGTGGACATGAAGAAGCTGATATGTACCCGAGGCGGGAAGAGCC
GGCAAGCGGAGTACGAAACCAGTCTAGACACCGGTAAGCGTTTCACCGGT
GGCACTTGGGCATACTAGGAGAATGGTTGTGGCGACGAATATGGGGCGAG
TCGCGGGCAAGCCTGTTGTTAGCATGCATGCTTCGGTGCAGGGGAATGCA
TGACACACCGCCGATGACACACCGCCTATACTCCGTCTCCCATGTCGTTG
CGTGTTGCAGCACCTGGGGTACTACGGCGGAACGTAAAGGGAAGCGCGAG
AATTGGTTGTCCGTTTGAGGTACGTAGCTGGTCTCCCGCGGAACATGTCT
TGGTGCAGTGGACGAAGAAAGGGTCCAACAGGTGTCTGAGGTCTTCGAGC
ATGAGAAAAAGATGTCCGAACTGCGTGTTTGAAATTGGGAGGGTCGGTCG
GGTGTCTTGTGATCCATGATCCATGTTGTGATCCATTACACACACGTATC
CCACGTATCCATCGTGTACTTATTTTTCTTCTATCCTGGTTGTGGACCCA
CCGTCCCGTTATTTCAGGTTAGCGTCCGGCACGCGAAGACCCACAGGTGG
CCCAAGATTAGCAACATGAAGCTCAAGCACAACCACAGCGTCGACCGTAA
CGCCATCGACGTGAAGGTTCGCCTCGCATCAAAACTAACGGAGGAGCAGC
TAGGACAAGTGAAGCAGATGACAAGTGAGAAAACTGAACGCCGAGGAGTG
GATCTACAGTAGCTCCCGTCGTATCCCACGTTTGTCATGGTTGGTAGTCA
TGATACCACATGACGAACGGCCCTTGAAGCGTGGTACTGCTGTCGCCTCC
TCGTTGTTACGCTGTTTGTCGGTGACACGCCACTTATTTTTGTGCTCCCG
GCTCTCCCATACGGCGCAGGTCATGGGATGAAGCCAAAAGAGGTGACAAA
AGCAATGAAGGCGTTGCACGAGGACAGCGACATCGACATCAACAAGCGCG
CGGTGCAGAACGCGGCTGCCACTGTGCACGGGGCGGAGAAGCCGAGAGAT
GCCGCCGATGCGTACGAAGAGGTGTGTCCATGTGTCCGTTGAGACTGTTG
CCTCTCTTGTTTGTGTGTGGGATGTTGGGTTTTGCTCAAGGCGGTAACCG
GGCGACGAGACACTCACGATCGCAGGTGACAACCGGGAGAATACATGCCC
CATGACACCAACCCAAGAAATGTTGGCGGTAAAAAAATTGTTCCGTGCCG
TCGTCGTGGTTTTGCGCGGATCCCCTCGATGTTTCCGGGCGCTTAACATG
TTGCAATTTCAGGTCATGGCCGCGACGGCCGACGGCGGAGTGTGCGAGAT
CAAGATGGATGACAGCGGCCGCTTGACGCACATCTGGTGGCAAACGAGAG
AGCAGGTAGGTCGCCGGTCGTTGTGCCCCATACGAATATTCCCCAGCCGG
AAGGTGTGCTTTCATTTTAGCATCTCGGACGTACAGCTTGGCCATCCGCA
AGTGTAGGACGTCTGACCGAAAGCAGGCCGTAGGCAAGGGTGGGGGTGCG
TTGTGACGCGTCCAACACACGTCACACCTACAATTAAGTGCTTTCGACCC
CCTTCGACGTCATGCTCCGAATACGCAGGTGGCGCTTTGGAATCGGTACG
GTCACGTTGCGCTCTACGACGACACCGCCGTCAAGAACAGATACCGGATG
CCCCTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10605:1511..3817+

>mRNA_Ecto-sp13_S_contig10605.564.1 ID=mRNA_Ecto-sp13_S_contig10605.564.1|Name=mRNA_Ecto-sp13_S_contig10605.564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=951bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10605:1511..3817+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTTCACCTCCCACTGGTCTACCGTTGGGGACCCCGGCCCCTGTGGG
TACTCCCGATGCTGGGGCCGCCGGAGGTTTTGTGGGCTACCCTGCACAAG
CCCACCCCGTACAGCAACAACAGCAGCAGACATTGACCACCAGCCCTCCG
CCGGAAACGCAGGTGTACGTTCCAGCTGTGTTAAAGGCGAAGCTGGAGGC
AGTGCAGACGGAGGGAAAGACGCTTGAGGACGTGGAGGAGGAGGTGGTGA
GGTTGTGCGCCGGTGAAGGGGCGATCCTTTCTACCGCGAAATCGACGAGG
TGTCGCGACGGCGCAACGGATCGTGTGGACATGAAGAAGCTGATATGTAC
CCGAGGCGGGAAGAGCCGGCAAGCGGAGTACGAAACCAGTCTAGACACCG
CACCTGGGGTACTACGGCGGAACGTAAAGGGAAGCGCGAGAATTGGTTGT
CCGTTTGAGGTTAGCGTCCGGCACGCGAAGACCCACAGGTGGCCCAAGAT
TAGCAACATGAAGCTCAAGCACAACCACAGCGTCGACCGTAACGCCATCG
ACGTGAAGGTTCGCCTCGCATCAAAACTAACGGAGGAGCAGCTAGGACAA
GTGAAGCAGATGACAAGTCATGGGATGAAGCCAAAAGAGGTGACAAAAGC
AATGAAGGCGTTGCACGAGGACAGCGACATCGACATCAACAAGCGCGCGG
TGCAGAACGCGGCTGCCACTGTGCACGGGGCGGAGAAGCCGAGAGATGCC
GCCGATGCGTACGAAGAGGTCATGGCCGCGACGGCCGACGGCGGAGTGTG
CGAGATCAAGATGGATGACAGCGGCCGCTTGACGCACATCTGGTGGCAAA
CGAGAGAGCAGGTAGGTCGCCGGTGGCGCTTTGGAATCGGTACGGTCACG
TTGCGCTCTACGACGACACCGCCGTCAAGAACAGATACCGGATGCCCCTC
G
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