mRNA_Ecto-sp13_S_contig10602.562.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10602.562.1
Unique NamemRNA_Ecto-sp13_S_contig10602.562.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10602.562.1 vs. uniprot
Match: D8LFE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE4_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 3.070e-54
Identity = 97/136 (71.32%), Postives = 97/136 (71.32%), Query Frame = 2 
Query:    2 RAAGGNHVEIMNYLMEKGAPVDQTDKSGRTALHWAVISGHKEATDILLAKDTDLFKTTSSGATPFLAACEGGRVDVVRSLMEKATALGVLEEMCNKQDAGGKTPFDMAAAGQHKATCSLLKELGDPNAQSAACTIS 409
            RAAGGNHVEIMNYLMEKGAPVDQTDKSG                                       ACEGGRVDVVRSLMEKATALGVLEEMCNKQDAGGKTPFDMAAAGQHKATCSLLKELGDPNAQSAACTIS
Sbjct:   43 RAAGGNHVEIMNYLMEKGAPVDQTDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACEGGRVDVVRSLMEKATALGVLEEMCNKQDAGGKTPFDMAAAGQHKATCSLLKELGDPNAQSAACTIS 178
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10602.562.1 vs. uniprot
Match: A0A6H5JSR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR0_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.020e-24
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 2 
Query:    2 RAAGGNHVEIMNYLMEKGAPVDQTDKSGRTALHWAVISGHKEATDILLAK 151
            RAAGGNHVEIMNYLMEKGAPVDQTDKSGRTALHWAVISGHKEATDILLAK
Sbjct:   43 RAAGGNHVEIMNYLMEKGAPVDQTDKSGRTALHWAVISGHKEATDILLAK 92
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10602.562.1 vs. uniprot
Match: D7FGW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW9_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.840e-14
Identity = 52/136 (38.24%), Postives = 68/136 (50.00%), Query Frame = 2 
Query:    2 RAAGGNHVEIMNYLMEKGAPVDQTDKSGRTALHWAVISGHKEATDILLAKDTDLFKTTSSGATPFLAACEGGRVDVVRSLMEKATALGVLEE-----------MCNKQDAGGKTPFDMAAAGQHKATCSLLKELGD 376
            RAAG NHV I+ YL++ GAPV+  D+  RT LHWA ISGH +AT +LL +  DL   T SG  P + A +     V  +++E +      EE           +C+  DA GKT    A            KELGD
Sbjct:   43 RAAGANHVGIIIYLLQAGAPVNTADRCLRTPLHWAAISGHLDATQLLLERGGDLRSKTVSGMNPLMCAVQQRWHSVAEAILEWSEGCTEDEEGVDGPVPSPAELCSATDAEGKTAVVFA------------KELGD 166
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10602.562.1 vs. uniprot
Match: A0A6H5JFE8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE8_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.110e-14
Identity = 53/136 (38.97%), Postives = 68/136 (50.00%), Query Frame = 2 
Query:    2 RAAGGNHVEIMNYLMEKGAPVDQTDKSGRTALHWAVISGHKEATDILLAKDTDLFKTTSSGATPFLAACEGGRVDVVRSLMEKATALGVLEE-----------MCNKQDAGGKTPFDMAAAGQHKATCSLLKELGD 376
            RAAG NHV I+ YL++ GAPVD  D+  RT LHWA ISGH +AT +LL +  DL   T SG  P + A +     V  +++E +      EE           +C+  DA GKT    A            KELGD
Sbjct:   50 RAAGANHVGIILYLLQAGAPVDTADRCLRTPLHWAAISGHLDATQLLLERGGDLRSKTVSGMNPLMCAVQQRWHSVAEAILEWSEGCTEDEEGVDGPVPSPAELCSATDAEGKTAVVFA------------KELGD 173
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10602.562.1 vs. uniprot
Match: A0A836CN67_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN67_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 6.490e-12
Identity = 43/136 (31.62%), Postives = 55/136 (40.44%), Query Frame = 2 
Query:    2 RAAGGNHVEIMNYLMEKGAPVDQTDKSGRTALHWAVISGHKEATDILLAKDTDLFKTTSSGATPFLAACEGGRVDVVRSLMEKATALGVLEEMCNKQDAGGKTPFDMAAAGQHKATCSLLKELGDPNAQSAACTIS 409
            RAAGGNHV ++ YL+ K                                                                  ATA   L+ +CN++D+  K  FD+AA G+H+A C LLKE+GDPNAQSAAC IS
Sbjct:   43 RAAGGNHVAVIEYLLSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAASLDALCNEKDSNAKGAFDLAAEGKHQAVCKLLKEMGDPNAQSAACVIS 178
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10602.562.1 vs. uniprot
Match: W7TUF1_9STRA (Ankyrin unc44 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUF1_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.340e-11
Identity = 42/135 (31.11%), Postives = 55/135 (40.74%), Query Frame = 2 
Query:    2 RAAGGNHVEIMNYLMEKGAPVDQTDKSGRTALHWAVISGHKEATDILLAKDTDLFKTTSSGATPFLAACEGGRVDVVRSLMEKATALGVLEEMCNKQDAGGKTPFDMAAAGQHKATCSLLKELGDPNAQSAACTI 406
            RAAG NH+E+  YL+E+GA +DQ DK                                                      + K    G  + + N +DA  KTPFD+A  G+H A    LKE+GDPNAQ AAC +
Sbjct:   22 RAAGSNHIEVCRYLIERGAKIDQADKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLTK----GDKDALVNARDADNKTPFDLAMQGKHAAVVKALKEMGDPNAQGAACCV 152
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10602.562.1 vs. uniprot
Match: A0A812UQV1_SYMMI (Kidins220b protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UQV1_SYMMI)

HSP 1 Score: 64.3 bits (155), Expect = 7.160e-9
Identity = 43/137 (31.39%), Postives = 57/137 (41.61%), Query Frame = 2 
Query:    2 RAAGGNHVEIMNYLMEKGAPVDQTDKSGRTALHWAVISGHKEATDILLAKDTDLFKTTSSGATPFLAACEGGRVDVVRSLME-KATALGVLEEMCNKQDAGGKTPFDMAAAGQHKATCSLLKELGDPNAQSAACTIS 409
            RAAG  H++I  YL+ KGA V+Q DKSG                                                   L+   A+   +  E+ N ++  GKT FD+A AG+ +A C  LK+ GD NA SAAC IS
Sbjct:   16 RAAGAGHLDICEYLVSKGALVNQPDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLAFVASDEAIRTELTNLKNQDGKTAFDVAVAGKQQAVCQALKDGGDANAASAACVIS 152
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10602.562.1 vs. uniprot
Match: A0A836CGQ7_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGQ7_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 6.660e-7
Identity = 40/136 (29.41%), Postives = 47/136 (34.56%), Query Frame = 2 
Query:    2 RAAGGNHVEIMNYLMEKGAPVDQTDKSGRTALHWAVISGHKEATDILLAKDTDLFKTTSSGATPFLAACEGGRVDVVRSLMEKATALGVLEEMCNKQDAGGKTPFDMAAAGQHKATCSLLKELGDPNAQSAACTIS 409
            RAAGGNH  ++ YL+ KGAP                                                               ATA   LE MCN++D+  K                LLKE+GDPNAQSAACTIS
Sbjct:   43 RAAGGNHTGVIEYLLSKGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAATLEAMCNEKDSNEKXXXXXXXXXXXXXXXXLLKEMGDPNAQSAACTIS 178
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10602.562.1 vs. uniprot
Match: A0A177REU8_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium SCGC AG-212-P17 TaxID=1803033 RepID=A0A177REU8_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 1.420e-6
Identity = 42/128 (32.81%), Postives = 61/128 (47.66%), Query Frame = 2 
Query:    5 AAGGNHVEIMNYLMEKGAPVDQTDKSGRTALHWAVISGHKEAT-DILLAKDTDLFKTTSSGATPFLAACEGGRVDVVRSLMEK-----ATALGVLEEMCNKQDAGGKTPFDMAAAGQHKATCSLLKEL 370
            AAGG H E++ +L + GA VDQTD   RTAL WAV  G  + T ++LL    +     +S  TP           ++RS++ K     +  L    +   K +  GKT  D+A   +    CS L E+
Sbjct:   28 AAGGGHTEVVTFLADSGAVVDQTDDCARTALGWAVTKGDFDDTANMLLKLGANPNHMDTSECTP-----------LIRSVLMKHPRCFSALLNAGAQSSIKHEPSGKTAIDLALESE----CSPLIEI 140
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10602.562.1 vs. uniprot
Match: A0A813TRM7_9BILA (39S ribosomal protein L17, mitochondrial n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813TRM7_9BILA)

HSP 1 Score: 59.3 bits (142), Expect = 4.560e-6
Identity = 34/108 (31.48%), Postives = 57/108 (52.78%), Query Frame = 2 
Query:   17 NHVEIMNYLMEKGAPVDQTDKSGRTALHWAVISGHKEATDILLAKDTDLFKTTSSGATPFLAACEGGRVDVVRSLMEKATALGVLEEMCNKQDAGGKTPFDMAAAGQH 340
            ++ EI+ +L+E  A +DQ +K G  A   AV  G+++  + L+     L   T +G TP   AC  G + +++ ++EK  A+   EE+ N +D+ G TP   A    H
Sbjct:   90 DNFEIVKFLVENKARLDQVNKDGWNAFMIAVREGNEKIVEYLMNLGECLVFKTKNGRTPCHTACLHGHLKILQMILEKNMAIS--EELLNARDSCGSTPLMEAIIADH 195
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10602.562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LFE4_ECTSI3.070e-5471.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSR0_9PHAE1.020e-24100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGW9_ECTSI1.840e-1438.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFE8_9PHAE2.110e-1438.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CN67_9STRA6.490e-1231.62Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
W7TUF1_9STRA1.340e-1131.11Ankyrin unc44 n=1 Tax=Nannochloropsis gaditana Tax... [more]
A0A812UQV1_SYMMI7.160e-931.39Kidins220b protein n=1 Tax=Symbiodinium microadria... [more]
A0A836CGQ7_9STRA6.660e-729.41Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A177REU8_9BACT1.420e-632.81Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A813TRM7_9BILA4.560e-631.4839S ribosomal protein L17, mitochondrial n=1 Tax=B... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10602contigEcto-sp13_S_contig10602:2480..4925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score163.3
Seed ortholog evalue7.4e-38
Seed eggNOG ortholog2880.D8LFE4
Preferred nameTIP1
Model size1047
KEGG koko:K20032
KEGG TC9.B.37.1,9.B.37.3
Hectar predicted targeting categoryother localisation
GOsGO:0000035,GO:0000902,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0008150,GO:0009653,GO:0009826,GO:0009932,GO:0009987,GO:0012505,GO:0016043,GO:0016049,GO:0031410,GO:0031982,GO:0031984,GO:0032502,GO:0032989,GO:0040007,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0048589,GO:0048856,GO:0048869,GO:0060560,GO:0071840,GO:0097708,GO:0098791
Exons3
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG0509@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-07_005970.1
EC2.3.1.225
Cds size381
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462541.5296884-UTR-Ecto-sp13_S_contig10602:2479..31141681462541.5296884-UTR-Ecto-sp13_S_contig10602:2479..3114Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10602 2480..3114 -
1681462541.5643194-UTR-Ecto-sp13_S_contig10602:4894..49251681462541.5643194-UTR-Ecto-sp13_S_contig10602:4894..4925Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10602 4895..4925 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462541.5401554-CDS-Ecto-sp13_S_contig10602:3114..31831681462541.5401554-CDS-Ecto-sp13_S_contig10602:3114..3183Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10602 3115..3183 -
1681462541.548232-CDS-Ecto-sp13_S_contig10602:4071..42631681462541.548232-CDS-Ecto-sp13_S_contig10602:4071..4263Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10602 4072..4263 -
1681462541.5562415-CDS-Ecto-sp13_S_contig10602:4774..48941681462541.5562415-CDS-Ecto-sp13_S_contig10602:4774..4894Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10602 4775..4894 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10602.562.1prot_Ecto-sp13_S_contig10602.562.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10602 3115..4894 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10602.562.1

>prot_Ecto-sp13_S_contig10602.562.1 ID=prot_Ecto-sp13_S_contig10602.562.1|Name=mRNA_Ecto-sp13_S_contig10602.562.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
MNYLMEKGAPVDQTDKSGRTALHWAVISGHKEATDILLAKDTDLFKTTSS
GATPFLAACEGGRVDVVRSLMEKATALGVLEEMCNKQDAGGKTPFDMAAA
GQHKATCSLLKELGDPNAQSAACTIS*
back to top

mRNA from alignment at Ecto-sp13_S_contig10602:2480..4925-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10602.562.1 ID=mRNA_Ecto-sp13_S_contig10602.562.1|Name=mRNA_Ecto-sp13_S_contig10602.562.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2446bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10602:2480..4925- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGAGCGGCCGGAGGGAACCATGTAGAGATCATGAACTATTTGATGGAAA
AGGGGGCTCCAGTGGATCAGACAGACAAGAGCGGACGGACTGCACTGCAC
TGGGCGGTCATCAGTGGACACAAGGAGGCCACAGATATCCTGCTCGCGAA
GGTGAGTGAGAGGAGAGTCATGGACGTACCATGCTTGCTGCTACAGCTGC
TGCTGCTGCTGCTGCTGCTGCTTCAGAAGCTGGTTTTATTGGTGGTGGTG
GTGGTGGTGGTGTTGTTGGTGTTGTTGTTGTTGTTGTCTTCCCCCTGGTA
GTAGTCGCAGCACAGTTTGTGTGGCGCGGGACCCCGCTTCGCAACACCGC
ATGGTGTCGGGGCTGGATTTGAGTGGTACCGAGTGAAACAATCTCAACAT
CGGTCAGACAACCACATCAAAACACCTCAGTTGGGTGTGACCATCTTCTC
ACCAGCAATGGCACCGCGACTCTACCCGTCATGTCTCCGTGCCCCTTGCC
CTTTCGACAACAAGCGGCGGTTAAAAATACCTCTTTCCGGATACAGCAAT
TGTGACTCTAGTGCTGCATTGCTCTTGAGCGGCAAAAAACACAAGATCCT
CCCCAAAAACGTGTAATAGCACACCCTTTCCCTCGCTTCCGCCTGCCTCC
CCAACCCGGAAGGACACGGATCTGTTCAAAACAACAAGTAGCGGGGCCAC
GCCTTTCTTGGCCGCGTGCGAAGGAGGCAGGGTCGATGTGGTTCGATCTT
TGATGGAGAAAGCAACAGCACTCGGAGTGCTCGAGGAGATGTGCAATAAG
CAGGATGCCGGAGGGAAAACGCCGTTTGATATGGCCGCAGCAGGCCAGCA
CAAGGTAATCATGTTCATGTTGTTGCCCGCTATGGTTTGTACTTCGGTCG
GCGGTCGATGAGGGAAGAGAGGAACCGAGTGTGAAAGTTCAGATGGGGGC
TACGGCAGCATGCACAGTAGCAACAGTCGACCAGTCAAGTACCGTCGGAT
AAAAGGGAAGAAAGTTCCAGGTTGATCGATCAAGTTGTTAAATAAATAAA
ATAGTTGCATTCTGTTCAGAAAAGTGTGTGACATCATCAGAAATGTTCCC
CGTGAAACTCATGCGCCAGGAACAGCTAGTCCCTTGGGGCTTCCATTCGG
CTAACTGCCCTTTTCTCGGGCAGGCCACTAACAAAAAACCACTGCCAGAG
CACGCATATTGTCTATGAAGGAGCATACGCGAGCGCAAGTGGAAGCACCA
GAACAAACCCCCCGAGGACCGTGCGATTCCCGTTGTCGGTCATACAGGAT
TGTTACAGCCCAACGGGAATCGCGCTTGGTCGGTCGGGAGCCTGTCACAC
GGCTAGATCTTGGAACTCTCTTATGGCTCTCTTTCTGACCTCTATCCCGA
AAAACAAGCAGAGATTTGAACGCGCTGGAACAACTTGTAAGGAGTAACCA
CAACAAGGCAGGTTCAATGTTGGTGGAACACTACTGGAGCATAACAAAGT
ACGCACACAACAACTATGTAGCGCGCTGGTCGGCGAAACCCTACGGTGAC
CAAGCATTATTGGTGGGGCGTGCCGTAGGAATGACAACGGTGCTTGATTT
CGGCAGGAATCCATGGTCAAGGTGACAAAAGTATCAGGAAGAACACTTGC
AACCCCTCCCCCTGTCTTAGAAAATATCCTGAAATCTCTGTACCCATTCC
GCTGTTGAATTTATGTGCGTTTCACCTGTTTGTTTCTTTCAGGCCACCTG
TAGCTTGTTGAAGGAGCTTGGGGACCCAAATGCGCAATCGGCAGCTTGCA
CAATCTCTTGATCTCCCGAACAACTAGGACAGCACCAACTCCAACTCGTT
TTGTATAGGTGGTCAGCGTGAGCGGCTTTCAGTAGGTTCCCAAGAAGCAC
TAGAGGAAGATTTGCAGAGAGGATAAATGTTTTGTAGACCGTGTATGTCG
CGAGTAAGCAGTTTTATGGGTTGTGGGACAAATCGCGTGTCACTTCATGA
GCGAGAGGCCAACTGTGGGAGTCTCTCAGGCCAAGTCCACATAGTTCTTG
ATGAGCACGAGGCTAACATGTTGGACTCAGCAACGAAGTCCGCCTCAAAT
CATGAACGCATTGATCTTTCTACCTGATGAATATCGTCTTTAGGCGTGCG
TTCACCTTTTGGTGGTGTGTGTGGTTGATTGTCCCACAGAGGCATGACAC
GTCAACTTTCATCACCAGGTGTGCCAGCGAACACAAGCGGAGGGGGTGGC
GCCATGAAGTACTCAGCCTACATGCGTGGCCATTGCATGTCACTTTCAAT
CTTCCTTCTATCTCACGATCTTTGCAAAGCTTGGGCCGCGAACATGGTGT
TTTCGACTCTTAGGTTGGCCTTGCAACAGGCGCAAGCCCTGTGGTTGCCT
CCCGTGCGGACTTGTTTCGGGCAAGGCATGCAAACGACTGCACGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10602:2480..4925-

>mRNA_Ecto-sp13_S_contig10602.562.1 ID=mRNA_Ecto-sp13_S_contig10602.562.1|Name=mRNA_Ecto-sp13_S_contig10602.562.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10602:2480..4925- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACTATTTGATGGAAAAGGGGGCTCCAGTGGATCAGACAGACAAGAG
CGGACGGACTGCACTGCACTGGGCGGTCATCAGTGGACACAAGGAGGCCA
CAGATATCCTGCTCGCGAAGGACACGGATCTGTTCAAAACAACAAGTAGC
GGGGCCACGCCTTTCTTGGCCGCGTGCGAAGGAGGCAGGGTCGATGTGGT
TCGATCTTTGATGGAGAAAGCAACAGCACTCGGAGTGCTCGAGGAGATGT
GCAATAAGCAGGATGCCGGAGGGAAAACGCCGTTTGATATGGCCGCAGCA
GGCCAGCACAAGGCCACCTGTAGCTTGTTGAAGGAGCTTGGGGACCCAAA
TGCGCAATCGGCAGCTTGCACAATCTCTTGA
back to top