mRNA_Ecto-sp13_S_contig1060.558.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1060.558.1
Unique NamemRNA_Ecto-sp13_S_contig1060.558.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1060.558.1 vs. uniprot
Match: D8LBU2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBU2_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.090e-12
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:  373 QGQSNSGSSTRANAELNALLGLDAANQRLGWPAHAESS 486
            QG+SNSGSSTRANAELNALLGLDAANQRLGWPAHAESS
Sbjct:   78 QGRSNSGSSTRANAELNALLGLDAANQRLGWPAHAESS 115
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1060.558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBU2_ECTSI1.090e-1297.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1060contigEcto-sp13_S_contig1060:738..2375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size514
Hectar predicted targeting categoryother localisation
Exons2
Cds size510
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462541.180016-CDS-Ecto-sp13_S_contig1060:739..8021681462541.180016-CDS-Ecto-sp13_S_contig1060:739..802Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1060 740..802 -
1681462541.1893473-CDS-Ecto-sp13_S_contig1060:1928..23751681462541.1893473-CDS-Ecto-sp13_S_contig1060:1928..2375Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1060 1929..2375 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1060.558.1prot_Ecto-sp13_S_contig1060.558.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1060 740..2375 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1060.558.1

>prot_Ecto-sp13_S_contig1060.558.1 ID=prot_Ecto-sp13_S_contig1060.558.1|Name=mRNA_Ecto-sp13_S_contig1060.558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=170bp
TELRPHRNVRSATRFSLQPPNNNNDNNGGTNNNRQSNRNSSSSAAGMTSR
QRSARISSGQPASSSARTSLERLPPAQQQQQQQQLQGKTPETPPRRSSRN
SAGIDRSQAQQQAEEETTASSAASQGQSNSGSSTRANAELNALLGLDAAN
QRLGWPAHAESSSEEEEEDE
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mRNA from alignment at Ecto-sp13_S_contig1060:738..2375-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1060.558.1 ID=mRNA_Ecto-sp13_S_contig1060.558.1|Name=mRNA_Ecto-sp13_S_contig1060.558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1638bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1060:738..2375- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTGAATTGAGACCGCATCGAAATGTTCGGTCAGCAACGAGGTTCTCTTT
GCAGCCGCCGAACAACAACAACGACAACAACGGCGGCACCAACAACAACC
GTCAGAGCAACCGCAACAGCAGCTCCTCAGCCGCCGGCATGACGTCTCGC
CAAAGATCAGCGAGAATCTCGTCCGGACAGCCAGCATCATCGTCGGCTCG
CACTTCGCTGGAACGGCTCCCTCCAGCACAACAGCAGCAGCAGCAGCAGC
AGCTCCAAGGAAAGACGCCCGAGACGCCTCCACGGCGCAGCTCGCGCAAC
TCGGCGGGCATAGACAGGTCTCAAGCGCAACAGCAAGCAGAGGAAGAAAC
CACCGCTTCGTCTGCAGCGAGCCAAGGTCAGAGCAACAGCGGCAGCAGCA
CCAGGGCGAACGCTGAGCTCAACGCTCTCCTTGGGCTGGACGCTGCGGTG
CGTGAAATGGAAAAATATTTGAATTTGGGTCGGAAACTACAACGCCCGAC
CGCCGCCCACCGCGGCACGTTTACTCTAATACAAAACTTTGAACACGGCT
CTGTTTTAACAAAAAAAAGACGTTCAAGCAAGCATCGTCTTACCCCACGG
CAGTTCCGGCGATCCGGGGTAGGAGCTCTCCTGAGCTGTTCTTCATGGCA
TGTTTCGCCATCATGGTACCATCATGTTCCCTCGTTCTTGCATGCGCACA
GCGCTTGACCATACCTTCAAAACTAACACATTGTGTAAAGTGCTTGTTTG
TGCGCCTCGGACGAGGGTTGAAAATTCATCGGACGTTGTACGTGCGCGCA
CACCCAAGGTGACGACACTTCTGTCTCCCGGAGTTGAATCACTGGGATGG
GGGAACGTACTACTGCCGTTCCGTTGACAACGAACACAAGGAATGTATGC
AGGGTTATGGTTCCTTGCTTAGCATGCTCCCCGCCTCGGTCAGCATGGCT
AGCCCTGCGTTTCAGCATAATATTGCCAGCCGCTTGTGCCGGTTCACAAC
GTGGCAAACCTCCTCGATCACGCCGAGCTCACCAAAGTTTTTCAAAAAAT
ATTTTCTTTTGTGGCATCAGCGCTTCAACCTCGGCTGCGGCATCGAGCTG
TGAACTCTTGGATATTTGGACGTTTTACCCCACCATGACGCCGGCGGCAT
AGCAGCGTGGGCGGCAACTGGTGATTTTTGCTTTTGCGGTCTTTTACCCC
AGAGCAAGGGGGCAGGCTCATGTCCCGAATCTAATGTATCCGCCTGGATA
CGTGTCCTTAACTTCGAGAGTGCAGAGCAGCGGCACCAAGCGCTACAGCC
GTATGTGTCTCGCGCGCTGGGTGGAAGCCATGCCTTGTCATCTCGTTGCG
CTGGCGAGAGCTCTTCCCCAAATATCGACTTCCCCTATGCACACCGGTGA
CCTCTCCCGAACTTGGTTGGAATCTGGTGCTTTCTCGTATATACCTCGCG
CCGAATCTCGCCTCAGGCAAAATCTGTCAATGCTGCTGCTCTGCACGTGG
GCTTGAGAAAAGCCACACTGAAAACGCCCGCGACATAATTTTTTTTCTAC
GCTGCGCCCCTCCCCTCCAACAGAACCAGCGCCTCGGATGGCCTGCCCAC
GCTGAATCTTCTTCTGAAGAAGAGGAGGAGGACGAGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1060:738..2375-

>mRNA_Ecto-sp13_S_contig1060.558.1 ID=mRNA_Ecto-sp13_S_contig1060.558.1|Name=mRNA_Ecto-sp13_S_contig1060.558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1060:738..2375- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTGAATTGAGACCGCATCGAAATGTTCGGTCAGCAACGAGGTTCTCTTT
GCAGCCGCCGAACAACAACAACGACAACAACGGCGGCACCAACAACAACC
GTCAGAGCAACCGCAACAGCAGCTCCTCAGCCGCCGGCATGACGTCTCGC
CAAAGATCAGCGAGAATCTCGTCCGGACAGCCAGCATCATCGTCGGCTCG
CACTTCGCTGGAACGGCTCCCTCCAGCACAACAGCAGCAGCAGCAGCAGC
AGCTCCAAGGAAAGACGCCCGAGACGCCTCCACGGCGCAGCTCGCGCAAC
TCGGCGGGCATAGACAGGTCTCAAGCGCAACAGCAAGCAGAGGAAGAAAC
CACCGCTTCGTCTGCAGCGAGCCAAGGTCAGAGCAACAGCGGCAGCAGCA
CCAGGGCGAACGCTGAGCTCAACGCTCTCCTTGGGCTGGACGCTGCGAAC
CAGCGCCTCGGATGGCCTGCCCACGCTGAATCTTCTTCTGAAGAAGAGGA
GGAGGACGAG
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