mRNA_Ecto-sp13_S_contig10594.552.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10594.552.1
Unique NamemRNA_Ecto-sp13_S_contig10594.552.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10594.552.1 vs. uniprot
Match: A0A6C0HCA8_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HCA8_9ZZZZ)

HSP 1 Score: 67.4 bits (163), Expect = 6.900e-11
Identity = 28/73 (38.36%), Postives = 43/73 (58.90%), Query Frame = 1
Query:   94 RWRVFNEQAKRRSIAVSISLDEYSSIVRTACSYCGEFTYEGYSGVDRVQNAGTYEIDNVVACCKTCNFMKGPL 312
            ++R++ +    R +   +S DE+ SIV   C YCG    +  +G+DR+ +   Y +DN VACCK CN+MK  L
Sbjct:  228 KFRLYQKSCLERCLEFKLSFDEFISIVNNDCFYCGYKNSDFVNGIDRIDSKKGYILDNCVACCKMCNYMKASL 300          
BLAST of mRNA_Ecto-sp13_S_contig10594.552.1 vs. uniprot
Match: A0A6C0B6K3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0B6K3_9ZZZZ)

HSP 1 Score: 65.1 bits (157), Expect = 4.460e-10
Identity = 23/58 (39.66%), Postives = 39/58 (67.24%), Query Frame = 1
Query:  139 VSISLDEYSSIVRTACSYCGEFTYEGYSGVDRVQNAGTYEIDNVVACCKTCNFMKGPL 312
            + ++++++ SI +  C YCG    +G++G+DR+ +   YEIDN V+CC  CN MKG +
Sbjct:  254 IDLTIEQFESITKQPCYYCGIIQDKGFNGIDRMDSTKGYEIDNCVSCCTECNMMKGAV 311          
BLAST of mRNA_Ecto-sp13_S_contig10594.552.1 vs. uniprot
Match: A0A0F9TZ00_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9TZ00_9ZZZZ)

HSP 1 Score: 59.3 bits (142), Expect = 3.960e-9
Identity = 30/79 (37.97%), Postives = 41/79 (51.90%), Query Frame = 1
Query:  100 RVFNEQAKRRSIAVSISLDEYSSIVRTACSYCG--------EFTYEGY---SGVDRVQNAGTYEIDNVVACCKTCNFMK 303
            R +   AKRR++   +SL +   +    C YCG        +  Y GY   +G+DRV NA  Y ++NVV CC  CN MK
Sbjct:   17 RRYKYSAKRRNLEFDLSLGDCEKLFGNVCYYCGSNPQQIITQKNYNGYFEYNGIDRVNNAKGYTVENVVTCCVKCNSMK 95          
BLAST of mRNA_Ecto-sp13_S_contig10594.552.1 vs. uniprot
Match: A0A6C0KWM1_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KWM1_9ZZZZ)

HSP 1 Score: 59.7 bits (143), Expect = 3.010e-8
Identity = 27/71 (38.03%), Postives = 42/71 (59.15%), Query Frame = 1
Query:  106 FNEQAKRRSIAVSISLDEYSSIVRTACSYCGEFTYEG--YSGVDRVQNAGTYEIDNVVACCKTCNFMKGPL 312
            +  +A +R +   ++L+E+++I    C YCG+   E    +G+DR  N   Y I+N VACC  CN+MKG L
Sbjct:  220 YKYRANKRILLFELTLEEFTNIRNNPCLYCGKENKEKTHQNGIDRKNNTVGYTIENSVACCGGCNYMKGEL 290          
BLAST of mRNA_Ecto-sp13_S_contig10594.552.1 vs. uniprot
Match: A0A6C0LRQ9_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LRQ9_9ZZZZ)

HSP 1 Score: 57.8 bits (138), Expect = 1.660e-7
Identity = 25/79 (31.65%), Postives = 42/79 (53.16%), Query Frame = 1
Query:   76 KVDLVYRWRVFNEQAKRRSIAVSISLDEYSSIVRTACSYCGEFTYEGYSGVDRVQNAGTYEIDNVVACCKTCNFMKGPL 312
            + ++  ++  + +    R +   I+ DE+ +IV     YCG        G+DR  ++  Y +DN +ACCK CN+MKG L
Sbjct:  220 RTNIYEKYNRYIKSCNERCLDFRITYDEFINIVXXXXXYCGYXXXXXXXGIDRKNSSIGYILDNCIACCKMCNYMKGSL 298          
BLAST of mRNA_Ecto-sp13_S_contig10594.552.1 vs. uniprot
Match: A0A3C2CGI7_9BACT (Uncharacterized protein n=1 Tax=Candidatus Nomurabacteria bacterium TaxID=2052152 RepID=A0A3C2CGI7_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 2.180e-6
Identity = 23/80 (28.75%), Postives = 44/80 (55.00%), Query Frame = 1
Query:   97 WRVFNEQAKRRSIAVSISLDEYSSIVRTACSYCGEFTYEGY-----------SGVDRVQNAGTYEIDNVVACCKTCNFMK 303
            ++ + + AK R ++  ++ +E+ S++  +C YC E   E +           +G+DR+ ++  Y  +NVV CCK CN+ K
Sbjct:   83 FKTYADSAKNRCLSFELTKEEFVSLISKSCFYCNEPPSERWHEARGNGHMLSNGLDRIDSSKGYTTNNVVPCCKKCNYAK 162          
BLAST of mRNA_Ecto-sp13_S_contig10594.552.1 vs. uniprot
Match: A0A6C0ITL0_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0ITL0_9ZZZZ)

HSP 1 Score: 52.8 bits (125), Expect = 9.610e-6
Identity = 26/74 (35.14%), Postives = 41/74 (55.41%), Query Frame = 1
Query:   94 RWRVFNEQAKRRSIAVSISLDEYSSIVRTACSYCGEFTYEGY-SGVDRVQNAGTYEIDNVVACCKTCNFMKGPL 312
            R++ +   A ++ I   +S DE  ++   +C YC      G+ +G+DR  +   Y  DNVV CCK CN++KG L
Sbjct:  274 RFKYYERCAIQKGINFDLSKDECCNLFDKSCYYCKHKDDNGFLNGIDRKSSYLGYIKDNVVTCCKMCNYIKGSL 347          
BLAST of mRNA_Ecto-sp13_S_contig10594.552.1 vs. uniprot
Match: A0A0F9F6T2_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9F6T2_9ZZZZ)

HSP 1 Score: 50.8 bits (120), Expect = 4.100e-5
Identity = 27/77 (35.06%), Postives = 38/77 (49.35%), Query Frame = 1
Query:  115 QAKRRSIAVSISLDEYSSIVRTACSYCG---------EFTYEGY--SGVDRVQNAGTYEIDNVVACCKTCNFMKGPL 312
            ++K+R I  ++S D +  +    C YCG         E     Y  +G+DRV N   Y  DNVV CCK CN+ K  +
Sbjct:  204 RSKKRKINFTLSFDTFVELTSQHCFYCGTKPSNITVNEAGNGDYVSNGIDRVDNNKGYIEDNVVPCCKVCNYAKNTM 280          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10594.552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6C0HCA8_9ZZZZ6.900e-1138.36Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0B6K3_9ZZZZ4.460e-1039.66Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A0F9TZ00_9ZZZZ3.960e-937.97Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A6C0KWM1_9ZZZZ3.010e-838.03Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0LRQ9_9ZZZZ1.660e-731.65Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A3C2CGI7_9BACT2.180e-628.75Uncharacterized protein n=1 Tax=Candidatus Nomurab... [more]
A0A6C0ITL0_9ZZZZ9.610e-635.14Uncharacterized protein (Fragment) n=1 Tax=viral m... [more]
A0A0F9F6T2_9ZZZZ4.100e-535.06Uncharacterized protein n=1 Tax=marine sediment me... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10594contigEcto-sp13_S_contig10594:2139..2453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size315
Hectar predicted targeting categorymitochondrion
Exons1
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462540.5353043-CDS-Ecto-sp13_S_contig10594:2138..24531681462540.5353043-CDS-Ecto-sp13_S_contig10594:2138..2453Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10594 2139..2453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10594.552.1prot_Ecto-sp13_S_contig10594.552.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10594 2139..2453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10594.552.1

>prot_Ecto-sp13_S_contig10594.552.1 ID=prot_Ecto-sp13_S_contig10594.552.1|Name=mRNA_Ecto-sp13_S_contig10594.552.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
IRRIRALQKKRYRRSLAYQRRLKARKVDLVYRWRVFNEQAKRRSIAVSIS
LDEYSSIVRTACSYCGEFTYEGYSGVDRVQNAGTYEIDNVVACCKTCNFM
KGPL*
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mRNA from alignment at Ecto-sp13_S_contig10594:2139..2453+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10594.552.1 ID=mRNA_Ecto-sp13_S_contig10594.552.1|Name=mRNA_Ecto-sp13_S_contig10594.552.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10594:2139..2453+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATACGCCGCATCAGAGCCCTACAGAAGAAGCGATACCGAAGATCCCTCGC TTACCAGAGGCGCTTAAAAGCCAGGAAAGTTGACTTGGTTTATAGGTGGA GGGTGTTTAATGAGCAAGCTAAGAGACGAAGCATTGCGGTATCGATTAGC CTTGACGAGTACAGCAGCATTGTGCGCACGGCATGCTCTTACTGTGGCGA GTTCACGTACGAGGGGTATTCAGGAGTGGACCGCGTGCAGAACGCGGGTA CGTACGAAATTGACAACGTCGTGGCCTGTTGTAAGACTTGCAATTTTATG AAAGGGCCACTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10594:2139..2453+

>mRNA_Ecto-sp13_S_contig10594.552.1 ID=mRNA_Ecto-sp13_S_contig10594.552.1|Name=mRNA_Ecto-sp13_S_contig10594.552.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10594:2139..2453+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATACGCCGCATCAGAGCCCTACAGAAGAAGCGATACCGAAGATCCCTCGC
TTACCAGAGGCGCTTAAAAGCCAGGAAAGTTGACTTGGTTTATAGGTGGA
GGGTGTTTAATGAGCAAGCTAAGAGACGAAGCATTGCGGTATCGATTAGC
CTTGACGAGTACAGCAGCATTGTGCGCACGGCATGCTCTTACTGTGGCGA
GTTCACGTACGAGGGGTATTCAGGAGTGGACCGCGTGCAGAACGCGGGTA
CGTACGAAATTGACAACGTCGTGGCCTGTTGTAAGACTTGCAATTTTATG
AAAGGGCCACTCTGA
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