mRNA_Ecto-sp13_S_contig10594.551.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10594.551.1 vs. uniprot
Match: A0A6H5K3D6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D6_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 8.490e-25 Identity = 58/116 (50.00%), Postives = 64/116 (55.17%), Query Frame = 1
Query: 34 PRPTCAMVSTDRDALVALYNATGGARWGSNTNWKTTAPLSEWYGVIVNDQGRVVELLLVNNNLKVGVHSQVWKPGHYLQISRYFVFVIRRTGPIPKELGKLPALETLLLNGNNLVG 381
PRPT +STDR ALVAL+NATGGA W NT W T APL +WYGV VND GRVV+L L NNLK G IP++LG L AL TL L N L G
Sbjct: 2 PRPTSTKMSTDRAALVALFNATGGANWKKNTKWNTDAPLGQWYGVEVNDAGRVVKLSLRYNNLK---------------------------GHIPRQLGDLGALMTLNLGVNKLEG 90
BLAST of mRNA_Ecto-sp13_S_contig10594.551.1 vs. uniprot
Match: A0A6H5JX36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX36_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 1.830e-21 Identity = 42/58 (72.41%), Postives = 46/58 (79.31%), Query Frame = 1
Query: 52 MVSTDRDALVALYNATGGARWGSNTNWKTTAPLSEWYGVIVNDQGRVVELLLVNNNLK 225
M STDRDALVALYNAT G RW +N NW T APLS+W+GV VNDQGRVV L L NNL+
Sbjct: 1 MASTDRDALVALYNATEGGRWSTNRNWNTGAPLSQWHGVHVNDQGRVVALELAENNLQ 58
BLAST of mRNA_Ecto-sp13_S_contig10594.551.1 vs. uniprot
Match: D8LFJ9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ9_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 2.380e-19 Identity = 50/107 (46.73%), Postives = 59/107 (55.14%), Query Frame = 1
Query: 34 PRPTCAMVSTDRDALVALYNATGGARWGSNTNWKTTAPLSEWYGVIVNDQGRVVELLLVNNNLKVGVHSQVWKPGHYLQISRYFVFVIRRTGPIPKELGKLPALETL 354
PRP M TDR+ALVALY A GGA+W +N NW T+A LS+W+GV VN QGRVV L L +NNL+ G IP ELG L L+TL
Sbjct: 19 PRPPYTMAQTDREALVALYTAIGGAKWRNNRNWNTSAALSQWHGVEVNSQGRVVNLFLWDNNLQ---------------------------GRIPTELGNLHMLDTL 98
BLAST of mRNA_Ecto-sp13_S_contig10594.551.1 vs. uniprot
Match: D8LFK2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK2_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 3.850e-19 Identity = 51/100 (51.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query: 52 MVSTDRDALVALYNATGGARWGSNTNWKTTAPLSEWYGVIVNDQGRVVELLLVNNNLKVGVHSQVWKPGHYLQISRYFVFVIRRTGPIPKELGKLPALET 351
M TDR ALVALYNATGGA W +N NW T+A LS+W+GV VN QGRVV+L L NNL+ GPIPKELG L LET
Sbjct: 71 MAQTDRKALVALYNATGGAEWKNNQNWTTSAALSQWHGVEVNTQGRVVKLSLGWNNLR---------------------------GPIPKELGALSRLET 143
BLAST of mRNA_Ecto-sp13_S_contig10594.551.1 vs. uniprot
Match: D7G496_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G496_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 1.480e-18 Identity = 49/101 (48.51%), Postives = 57/101 (56.44%), Query Frame = 1
Query: 52 MVSTDRDALVALYNATGGARWGSNTNWKTTAPLSEWYGVIVNDQGRVVELLLVNNNLKVGVHSQVWKPGHYLQISRYFVFVIRRTGPIPKELGKLPALETL 354
M TDR ALVALYNATGG +W +N NW T+A LS+WY V VN QGRVV+L L NNNL+ GPIP E+G+L LE L
Sbjct: 125 MAQTDRKALVALYNATGGVKWKNNQNWNTSAALSQWYRVEVNSQGRVVKLSLWNNNLQ---------------------------GPIPVEVGRLAVLEYL 198
BLAST of mRNA_Ecto-sp13_S_contig10594.551.1 vs. uniprot
Match: A0A6H5K8T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T5_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 4.230e-18 Identity = 51/114 (44.74%), Postives = 58/114 (50.88%), Query Frame = 1
Query: 40 PTCAMVSTDRDALVALYNATGGARWGSNTNWKTTAPLSEWYGVIVNDQGRVVELLLVNNNLKVGVHSQVWKPGHYLQISRYFVFVIRRTGPIPKELGKLPALETLLLNGNNLVG 381
P A++STDRDALVALY+AT GA W S NW T PL W GV NDQGRVV L L +N L G IP +LG L AL+ L L N L+G
Sbjct: 104 PASAIMSTDRDALVALYDATDGANWKSKQNWNTDLPLGRWRGVEANDQGRVVGLDLPDNKLH---------------------------GHIPSDLGHLSALQKLNLLSNQLIG 190
BLAST of mRNA_Ecto-sp13_S_contig10594.551.1 vs. uniprot
Match: A0A6H5JFA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA4_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 4.560e-18 Identity = 47/99 (47.47%), Postives = 56/99 (56.57%), Query Frame = 1
Query: 52 MVSTDRDALVALYNATGGARWGSNTNWKTTAPLSEWYGVIVNDQGRVVELLLVNNNLKVGVHSQVWKPGHYLQISRYFVFVIRRTGPIPKELGKLPALE 348
M TDR++L A YNAT GA+W NTNW + APLS+WYGV NDQGRVV+L L +NNL+ GPIP ELG L AL+
Sbjct: 35 MAQTDRESLTAFYNATDGAKWIRNTNWGSGAPLSDWYGVEANDQGRVVKLYLSSNNLR---------------------------GPIPLELGNLSALQ 106
BLAST of mRNA_Ecto-sp13_S_contig10594.551.1 vs. uniprot
Match: A0A6H5KVC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVC7_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 3.000e-17 Identity = 48/103 (46.60%), Postives = 56/103 (54.37%), Query Frame = 1
Query: 52 MVSTDRDALVALYNATGGARWGSNTNWKTTAPLSEWYGVIVNDQGRVVELLLVNNNLKVGVHSQVWKPGHYLQISRYFVFVIRRTGPIPKELGKLPALETLLL 360
M DR+ALVALYNATGGA+W + NW T A LS+WYGV V+ QGRVV L L NNL+ G IP ELG+L AL+ L L
Sbjct: 96 MAQPDREALVALYNATGGAKWENKRNWNTRAALSQWYGVEVDSQGRVVTLSLAGNNLQ---------------------------GTIPPELGQLTALQFLHL 171
BLAST of mRNA_Ecto-sp13_S_contig10594.551.1 vs. uniprot
Match: UPI001554611F (T9SS type A sorting domain-containing protein n=1 Tax=Lentimicrobium sp. L6 TaxID=2735916 RepID=UPI001554611F) HSP 1 Score: 85.9 bits (211), Expect = 5.650e-17 Identity = 45/107 (42.06%), Postives = 59/107 (55.14%), Query Frame = 1
Query: 61 TDRDALVALYNATGGARWGSNTNWKTTAPLSEWYGVIVNDQGRVVELLLVNNNLKVGVHSQVWKPGHYLQISRYFVFVIRRTGPIPKELGKLPALETLLLNGNNLVG 381
T+RDAL+ALYNATGG W NTNW + APL +WYGVI ++ G+V++L L +NNL TG +P E+G L L L L GN++ G
Sbjct: 202 TERDALMALYNATGGDNWTDNTNWNSEAPLGDWYGVITDNDGQVIDLSLYDNNL---------------------------TGYLPTEIGDLSFLAKLGLGGNSIGG 281
BLAST of mRNA_Ecto-sp13_S_contig10594.551.1 vs. uniprot
Match: A0A6H5KQQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ0_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 1.110e-16 Identity = 46/103 (44.66%), Postives = 55/103 (53.40%), Query Frame = 1
Query: 52 MVSTDRDALVALYNATGGARWGSNTNWKTTAPLSEWYGVIVNDQGRVVELLLVNNNLKVGVHSQVWKPGHYLQISRYFVFVIRRTGPIPKELGKLPALETLLL 360
M S DRDALVAL+ +TGGA W NW T A + W+GV VNDQGRVV++ L +NNL+ GPIPKELG L L +L L
Sbjct: 1 MASKDRDALVALFCSTGGAGWTRRDNWNTDADRATWFGVKVNDQGRVVDVDLGSNNLQ---------------------------GPIPKELGALAKLASLCL 76 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10594.551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10594.551.1 >prot_Ecto-sp13_S_contig10594.551.1 ID=prot_Ecto-sp13_S_contig10594.551.1|Name=mRNA_Ecto-sp13_S_contig10594.551.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp TSAKNPCVCTPPRPTCAMVSTDRDALVALYNATGGARWGSNTNWKTTAPLback to top mRNA from alignment at Ecto-sp13_S_contig10594:1548..2760- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10594.551.1 ID=mRNA_Ecto-sp13_S_contig10594.551.1|Name=mRNA_Ecto-sp13_S_contig10594.551.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10594:1548..2760- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10594:1548..2760- >mRNA_Ecto-sp13_S_contig10594.551.1 ID=mRNA_Ecto-sp13_S_contig10594.551.1|Name=mRNA_Ecto-sp13_S_contig10594.551.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10594:1548..2760- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |