mRNA_Ecto-sp13_S_contig10594.551.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10594.551.1
Unique NamemRNA_Ecto-sp13_S_contig10594.551.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10594.551.1 vs. uniprot
Match: A0A6H5K3D6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D6_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 8.490e-25
Identity = 58/116 (50.00%), Postives = 64/116 (55.17%), Query Frame = 1
Query:   34 PRPTCAMVSTDRDALVALYNATGGARWGSNTNWKTTAPLSEWYGVIVNDQGRVVELLLVNNNLKVGVHSQVWKPGHYLQISRYFVFVIRRTGPIPKELGKLPALETLLLNGNNLVG 381
            PRPT   +STDR ALVAL+NATGGA W  NT W T APL +WYGV VND GRVV+L L  NNLK                           G IP++LG L AL TL L  N L G
Sbjct:    2 PRPTSTKMSTDRAALVALFNATGGANWKKNTKWNTDAPLGQWYGVEVNDAGRVVKLSLRYNNLK---------------------------GHIPRQLGDLGALMTLNLGVNKLEG 90          
BLAST of mRNA_Ecto-sp13_S_contig10594.551.1 vs. uniprot
Match: A0A6H5JX36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX36_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.830e-21
Identity = 42/58 (72.41%), Postives = 46/58 (79.31%), Query Frame = 1
Query:   52 MVSTDRDALVALYNATGGARWGSNTNWKTTAPLSEWYGVIVNDQGRVVELLLVNNNLK 225
            M STDRDALVALYNAT G RW +N NW T APLS+W+GV VNDQGRVV L L  NNL+
Sbjct:    1 MASTDRDALVALYNATEGGRWSTNRNWNTGAPLSQWHGVHVNDQGRVVALELAENNLQ 58          
BLAST of mRNA_Ecto-sp13_S_contig10594.551.1 vs. uniprot
Match: D8LFJ9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ9_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 2.380e-19
Identity = 50/107 (46.73%), Postives = 59/107 (55.14%), Query Frame = 1
Query:   34 PRPTCAMVSTDRDALVALYNATGGARWGSNTNWKTTAPLSEWYGVIVNDQGRVVELLLVNNNLKVGVHSQVWKPGHYLQISRYFVFVIRRTGPIPKELGKLPALETL 354
            PRP   M  TDR+ALVALY A GGA+W +N NW T+A LS+W+GV VN QGRVV L L +NNL+                           G IP ELG L  L+TL
Sbjct:   19 PRPPYTMAQTDREALVALYTAIGGAKWRNNRNWNTSAALSQWHGVEVNSQGRVVNLFLWDNNLQ---------------------------GRIPTELGNLHMLDTL 98          
BLAST of mRNA_Ecto-sp13_S_contig10594.551.1 vs. uniprot
Match: D8LFK2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK2_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 3.850e-19
Identity = 51/100 (51.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:   52 MVSTDRDALVALYNATGGARWGSNTNWKTTAPLSEWYGVIVNDQGRVVELLLVNNNLKVGVHSQVWKPGHYLQISRYFVFVIRRTGPIPKELGKLPALET 351
            M  TDR ALVALYNATGGA W +N NW T+A LS+W+GV VN QGRVV+L L  NNL+                           GPIPKELG L  LET
Sbjct:   71 MAQTDRKALVALYNATGGAEWKNNQNWTTSAALSQWHGVEVNTQGRVVKLSLGWNNLR---------------------------GPIPKELGALSRLET 143          
BLAST of mRNA_Ecto-sp13_S_contig10594.551.1 vs. uniprot
Match: D7G496_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G496_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.480e-18
Identity = 49/101 (48.51%), Postives = 57/101 (56.44%), Query Frame = 1
Query:   52 MVSTDRDALVALYNATGGARWGSNTNWKTTAPLSEWYGVIVNDQGRVVELLLVNNNLKVGVHSQVWKPGHYLQISRYFVFVIRRTGPIPKELGKLPALETL 354
            M  TDR ALVALYNATGG +W +N NW T+A LS+WY V VN QGRVV+L L NNNL+                           GPIP E+G+L  LE L
Sbjct:  125 MAQTDRKALVALYNATGGVKWKNNQNWNTSAALSQWYRVEVNSQGRVVKLSLWNNNLQ---------------------------GPIPVEVGRLAVLEYL 198          
BLAST of mRNA_Ecto-sp13_S_contig10594.551.1 vs. uniprot
Match: A0A6H5K8T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T5_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 4.230e-18
Identity = 51/114 (44.74%), Postives = 58/114 (50.88%), Query Frame = 1
Query:   40 PTCAMVSTDRDALVALYNATGGARWGSNTNWKTTAPLSEWYGVIVNDQGRVVELLLVNNNLKVGVHSQVWKPGHYLQISRYFVFVIRRTGPIPKELGKLPALETLLLNGNNLVG 381
            P  A++STDRDALVALY+AT GA W S  NW T  PL  W GV  NDQGRVV L L +N L                            G IP +LG L AL+ L L  N L+G
Sbjct:  104 PASAIMSTDRDALVALYDATDGANWKSKQNWNTDLPLGRWRGVEANDQGRVVGLDLPDNKLH---------------------------GHIPSDLGHLSALQKLNLLSNQLIG 190          
BLAST of mRNA_Ecto-sp13_S_contig10594.551.1 vs. uniprot
Match: A0A6H5JFA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA4_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 4.560e-18
Identity = 47/99 (47.47%), Postives = 56/99 (56.57%), Query Frame = 1
Query:   52 MVSTDRDALVALYNATGGARWGSNTNWKTTAPLSEWYGVIVNDQGRVVELLLVNNNLKVGVHSQVWKPGHYLQISRYFVFVIRRTGPIPKELGKLPALE 348
            M  TDR++L A YNAT GA+W  NTNW + APLS+WYGV  NDQGRVV+L L +NNL+                           GPIP ELG L AL+
Sbjct:   35 MAQTDRESLTAFYNATDGAKWIRNTNWGSGAPLSDWYGVEANDQGRVVKLYLSSNNLR---------------------------GPIPLELGNLSALQ 106          
BLAST of mRNA_Ecto-sp13_S_contig10594.551.1 vs. uniprot
Match: A0A6H5KVC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVC7_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.000e-17
Identity = 48/103 (46.60%), Postives = 56/103 (54.37%), Query Frame = 1
Query:   52 MVSTDRDALVALYNATGGARWGSNTNWKTTAPLSEWYGVIVNDQGRVVELLLVNNNLKVGVHSQVWKPGHYLQISRYFVFVIRRTGPIPKELGKLPALETLLL 360
            M   DR+ALVALYNATGGA+W +  NW T A LS+WYGV V+ QGRVV L L  NNL+                           G IP ELG+L AL+ L L
Sbjct:   96 MAQPDREALVALYNATGGAKWENKRNWNTRAALSQWYGVEVDSQGRVVTLSLAGNNLQ---------------------------GTIPPELGQLTALQFLHL 171          
BLAST of mRNA_Ecto-sp13_S_contig10594.551.1 vs. uniprot
Match: UPI001554611F (T9SS type A sorting domain-containing protein n=1 Tax=Lentimicrobium sp. L6 TaxID=2735916 RepID=UPI001554611F)

HSP 1 Score: 85.9 bits (211), Expect = 5.650e-17
Identity = 45/107 (42.06%), Postives = 59/107 (55.14%), Query Frame = 1
Query:   61 TDRDALVALYNATGGARWGSNTNWKTTAPLSEWYGVIVNDQGRVVELLLVNNNLKVGVHSQVWKPGHYLQISRYFVFVIRRTGPIPKELGKLPALETLLLNGNNLVG 381
            T+RDAL+ALYNATGG  W  NTNW + APL +WYGVI ++ G+V++L L +NNL                           TG +P E+G L  L  L L GN++ G
Sbjct:  202 TERDALMALYNATGGDNWTDNTNWNSEAPLGDWYGVITDNDGQVIDLSLYDNNL---------------------------TGYLPTEIGDLSFLAKLGLGGNSIGG 281          
BLAST of mRNA_Ecto-sp13_S_contig10594.551.1 vs. uniprot
Match: A0A6H5KQQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ0_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.110e-16
Identity = 46/103 (44.66%), Postives = 55/103 (53.40%), Query Frame = 1
Query:   52 MVSTDRDALVALYNATGGARWGSNTNWKTTAPLSEWYGVIVNDQGRVVELLLVNNNLKVGVHSQVWKPGHYLQISRYFVFVIRRTGPIPKELGKLPALETLLL 360
            M S DRDALVAL+ +TGGA W    NW T A  + W+GV VNDQGRVV++ L +NNL+                           GPIPKELG L  L +L L
Sbjct:    1 MASKDRDALVALFCSTGGAGWTRRDNWNTDADRATWFGVKVNDQGRVVDVDLGSNNLQ---------------------------GPIPKELGALAKLASLCL 76          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10594.551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3D6_9PHAE8.490e-2550.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JX36_9PHAE1.830e-2172.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFJ9_ECTSI2.380e-1946.73Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D8LFK2_ECTSI3.850e-1951.00Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7G496_ECTSI1.480e-1848.51Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5K8T5_9PHAE4.230e-1844.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFA4_9PHAE4.560e-1847.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVC7_9PHAE3.000e-1746.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001554611F5.650e-1742.06T9SS type A sorting domain-containing protein n=1 ... [more]
A0A6H5KQQ0_9PHAE1.110e-1644.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10594contigEcto-sp13_S_contig10594:1548..2760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score90.9
Seed ortholog evalue4.6e-16
Seed eggNOG ortholog2880.D8LFK2
Model size381
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2E19U@1,2S8MQ@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-09_000970.1
Cds size381
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462540.5008504-CDS-Ecto-sp13_S_contig10594:1547..17021681462540.5008504-CDS-Ecto-sp13_S_contig10594:1547..1702Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10594 1548..1702 -
1681462540.5103347-CDS-Ecto-sp13_S_contig10594:2534..27601681462540.5103347-CDS-Ecto-sp13_S_contig10594:2534..2760Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10594 2535..2760 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10594.551.1prot_Ecto-sp13_S_contig10594.551.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10594 1548..2760 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10594.551.1

>prot_Ecto-sp13_S_contig10594.551.1 ID=prot_Ecto-sp13_S_contig10594.551.1|Name=mRNA_Ecto-sp13_S_contig10594.551.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
TSAKNPCVCTPPRPTCAMVSTDRDALVALYNATGGARWGSNTNWKTTAPL
SEWYGVIVNDQGRVVELLLVNNNLKVGVHSQVWKPGHYLQISRYFVFVIR
RTGPIPKELGKLPALETLLLNGNNLVG
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mRNA from alignment at Ecto-sp13_S_contig10594:1548..2760-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10594.551.1 ID=mRNA_Ecto-sp13_S_contig10594.551.1|Name=mRNA_Ecto-sp13_S_contig10594.551.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10594:1548..2760- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTTCCGCAAAAAACCCGTGCGTGTGCACTCCCCCCAGGCCCACTTGTGC GATGGTGTCGACCGACCGCGACGCATTGGTTGCCCTTTACAACGCGACCG GTGGGGCTCGTTGGGGGAGCAACACAAACTGGAAAACTACCGCCCCCCTC TCGGAATGGTACGGAGTCATAGTCAACGACCAGGGCCGCGTGGTGGAGTT GCTTCTGGTGAACAACAACCTGAAAGGTATCTTCACCGTATTCACTTAGT CCGTAGAGCCAGTTGCCGTGTTGCAATGTGCTCGACCTTTCCCAAGAATT CCTTGACTCAGAGTGGCCCTTTCATAAAATTGCAAGTCTTACAACAGGCC ACGACGTTGTCAATTTCGTACGTACCCGCGTTCTGCACGCGGTCCACTCC TGAATACCCCTCGTACGTGAACTCGCCACAGTAAGAGCATGCCGTGCGCA CAATGCTGCTGTACTCGTCAAGGCTAATCGATACCGCAATGCTTCGTCTC TTAGCTTGCTCATTAAACACCCTCCACCTATAAACCAAGTCAACTTTCCT GGCTTTTAAGCGCCTCTGGTAAGCGAGGGATCTTCGGTATCGCTTCTTCT GTAGGGCTCTGATGCGGCGTATATCGTACTCTGGAGCATTCTCGACGACG AATCCGTTCCGCACGGGCCCAGTAGGCTTGTTGGTTGGTTTCCTTGCCGA TATCCATCCGCTGTCCTTTGACGCACCCATGGCTGATAAACGATCGGAAG TGCTGTGTGGTGCCTTGTGGAAAGAAGGATTCATCATGAATCTCGTAAAA TGTCTCACCAGTTAATTTGTTGCGATCGAGGTGGAGCTCCTGAAGTGCTG CGAGCTGTCCCAGCTCCGGCGGTATGGAGCCTGCAAGCAGAATAACAATG CGAATTAAGCGGGGAATAAAAAATAAATAGCCCGATTCATTTTTCTAGAT CATTGATCTCCGTAGATCTTGTCATGTCAAGGGCGTAGTTGGCGTCCACT CGTAGCGAAAGATATCCCGCGAGTTCCCAAATGGCGAAATTTCGTACCCG CCTACTAGTTGGCGTCCACTCACAGGTCTGGAAGCCGGGGCATTATTTAC AAATTTCCCGCTACTTCGTTTTCGTTATTCGCCGTACAGGACCGATACCG AAGGAGCTAGGGAAGCTTCCTGCGCTAGAGACGCTACTTCTGAATGGCAA CAACCTAGTTGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10594:1548..2760-

>mRNA_Ecto-sp13_S_contig10594.551.1 ID=mRNA_Ecto-sp13_S_contig10594.551.1|Name=mRNA_Ecto-sp13_S_contig10594.551.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10594:1548..2760- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTTCCGCAAAAAACCCGTGCGTGTGCACTCCCCCCAGGCCCACTTGTGC
GATGGTGTCGACCGACCGCGACGCATTGGTTGCCCTTTACAACGCGACCG
GTGGGGCTCGTTGGGGGAGCAACACAAACTGGAAAACTACCGCCCCCCTC
TCGGAATGGTACGGAGTCATAGTCAACGACCAGGGCCGCGTGGTGGAGTT
GCTTCTGGTGAACAACAACCTGAAAGTTGGCGTCCACTCACAGGTCTGGA
AGCCGGGGCATTATTTACAAATTTCCCGCTACTTCGTTTTCGTTATTCGC
CGTACAGGACCGATACCGAAGGAGCTAGGGAAGCTTCCTGCGCTAGAGAC
GCTACTTCTGAATGGCAACAACCTAGTTGGC
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