mRNA_Ecto-sp13_S_contig1059.546.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1059.546.1 vs. uniprot
Match: D8LCP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP8_ECTSI) HSP 1 Score: 363 bits (933), Expect = 1.830e-119 Identity = 196/240 (81.67%), Postives = 201/240 (83.75%), Query Frame = 1
Query: 1 KIWNGVVIDPAPDADEAFPRGVSMTWGEVCDIETFSLKVSKHTVEGNTSAVKSVPCGLSSVEVCLVEVAFDFLPGKEPLRVGVNSTGQSTAVRRRLGDGILGVGSRDRHQQQPEFGWGRSGGXXXSVRRRKLQSDPVEIQVLVLYTNISLVLMGVSDVQMETMVSAAISTVNVGFENSNIGIETTTVYKGRLPYYHDYTDDSSTKLSDLRENEEVNALRDEYGADIVLLVDYLRDACGIA 720
+IWNGVVIDP PDA EAFPRGVSMTWGEVCD+ETFSLKVSKHTVEGNTSAVKSVPCGLS VEVCLVEVAFDFLPGKEPLRVGVNSTGQSTAVRRRLGDGILG GSRDRH XXX +VLYTN+SLVLMGVSDVQMETMVSAAISTVNVGFENSNIGIETTTVYKGRLPYY D DDSSTKLS LRE+E VNALRDEYGADIVLLVDYL DACGIA
Sbjct: 217 RIWNGVVIDPEPDAGEAFPRGVSMTWGEVCDVETFSLKVSKHTVEGNTSAVKSVPCGLSGVEVCLVEVAFDFLPGKEPLRVGVNSTGQSTAVRRRLGDGILGGGSRDRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVLYTNMSLVLMGVSDVQMETMVSAAISTVNVGFENSNIGIETTTVYKGRLPYYQDCADDSSTKLSALREDEGVNALRDEYGADIVLLVDYLTDACGIA 456
BLAST of mRNA_Ecto-sp13_S_contig1059.546.1 vs. uniprot
Match: A0A6H5JBZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBZ9_9PHAE) HSP 1 Score: 306 bits (783), Expect = 3.970e-100 Identity = 170/208 (81.73%), Postives = 180/208 (86.54%), Query Frame = 1
Query: 97 ETFSLKVSKHTVEGNTSAVKSVPCGLSSVEVCLVEVAFDFLPGKEPLRVGVNSTGQSTAVRRRLGDGILGVGSRDRHQQQPEFGWGRSGGXXXSVRRRKLQSDPVEIQVLVLYTNISLVLMGVSDVQMETMVSAAISTVNVGFENSNIGIETTTVYKGRLPYYHDYTDDSSTKLSDLRENEEVNALRDEYGADIVLLVDYLRDACGIA 720
+TFSLKVSKHTVEGNTS +KSVPCGLS VEVCLVEVAFDFLPGKEPL VGVNSTGQSTAVRRRLG+G+ G GSR +HQ XXX KLQS+PVE VLVLYTN+SLVLMGVSDVQMETMVSAAISTVN+GFENS+IGIETTTVY+GRLPY DYTDDSSTKLSDLRENEEVNALRDEYGADIVLLVDYL DACGIA
Sbjct: 20 QTFSLKVSKHTVEGNTSTMKSVPCGLSGVEVCLVEVAFDFLPGKEPLGVGVNSTGQSTAVRRRLGNGMFGGGSRAKHQXXXXXXXXXXXXXXXXXXXXKLQSNPVE--VLVLYTNMSLVLMGVSDVQMETMVSAAISTVNMGFENSHIGIETTTVYQGRLPYSQDYTDDSSTKLSDLRENEEVNALRDEYGADIVLLVDYLLDACGIA 225
BLAST of mRNA_Ecto-sp13_S_contig1059.546.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE) HSP 1 Score: 213 bits (543), Expect = 1.120e-57 Identity = 148/384 (38.54%), Postives = 202/384 (52.60%), Query Frame = 1
Query: 1 KIWNGVVIDPAPDADEAFPRGVSMTWGEVCDIETFSLKVSKHTVEGNTSAVKSVPCGL-SSVEVCLVEVAFDFLPGKEPLRVGVNSTGQSTAV--------RRRLGDGILGVGSRDRHQQQPEFGWGRSGGXXXSVRRRKLQSDPVEIQVLVLYTNISLVLMGVSDVQMETMVSAAISTVNVGFENSNIG-IETTTVYKGRLPYY---HDYTD----DSSTKLSDLRENEEVNALRDEYGADIVLLVDYLRDACGIAYFLTNEYSTESEWAYAAVSPNCFDNLVIGHEFGHNLGCAHNREHSSIEMEYAHGYRYCSGTT-YITIMSY-QEGC-----PAA-----RANYFANPDVSYLDQPTGTGTEDCARAIDENKEAVSNFR 1065
K W G V+DP P + + PR VSMTW + CDIETF LK+ +G+TS SVPC SS E+C+VE+ F + + +S+ ST+ RR+ + GSR W + R LQ V I VL+ Y+ + G+SD Q+ T + + T+N NS I +E V+ LPY +D D D +L L N VN LR+EY D+V LV Y CG+ Y ++ +E+ ++ V NCFDN HE HN+GC H+R++S + EY HGYRYC+G+ Y TIMSY Q GC P A + NYF+NP+V+YL++PTGT T D AR I+E+ AVSNFR
Sbjct: 222 KTWLGEVVDPEPSTN-SIPRTVSMTWTDPCDIETFLLKLVSRNSDGSTSIATSVPCSAGSSSEICMVELQKFFYDESDAVDTSQSSSSSSTSKYQGSRMLKERRVSTTFMEEGSR----------WSQG-----IPSDRSLQGTTV-IDVLIFYSPEAASSEGISDAQLLTRIVEGMVTLNQAITNSAIADLEYRLVHVAELPYSQMTYDPIDSDDIDLEPELDALAANSAVNDLRNEYQGDLVQLVGYFPGTCGLGYI----FNGNAEFGFSLVGSNCFDNFSHTHEIAHNMGCYHDRDNSETQDEYRHGYRYCTGSDPYRTIMSYYQNGCGGDPTPEADPIVPQVNYFSNPEVTYLNKPTGTATADNARCIEESMVAVSNFR 584
BLAST of mRNA_Ecto-sp13_S_contig1059.546.1 vs. uniprot
Match: D8LC56_ECTSI (Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC56_ECTSI) HSP 1 Score: 129 bits (325), Expect = 7.550e-30 Identity = 120/413 (29.06%), Postives = 185/413 (44.79%), Query Frame = 1
Query: 4 IWNGVVIDPAPDADEAFPRGVSMTWGEVCDIETFSLKVSKHTVEGNTSAVKSVPCGLSSVEVCLVEV---AFDFLPGKEPL--RVGV-NSTGQSTAVRR-------------------------------RLGDGILGVGSRDRHQQQ------PEFGWGRSGGXXXSVRR-----------RKLQSDPVEIQVLVLYTNISLVLM------GVSDVQMETMVSAAISTVNVGFENSNIGIETTTVYKGRLPYYHDYTDDSSTKLSDLR---ENEEVNALRDEYGADIVLLVDYLRDACGIAYFLTNEYSTESEWAYAAVSPNCFDNLVIGHEFGHNLGCAHNREH---SSIEMEYAHGYRYCS-GTTYITIMSYQEGCPAA-RANYFANPDVSYLDQPTGTGTEDCARAIDE 1038
IW G V + + D D PR +SMTW C + F +++ +G + S+P + L V + D + ++ + R+ + +S G+ T +R+ RL D + D Q Q PE G+ +RR R L S+ V I VLVLYT +++ G S QME+ ++ A N S + V+ + P+ D+S + + D+R +NE V+ LRDEYGAD+V L+ Y + CG+ + + + S +++ Y+ V NC N HE GHN G HN+E+ S Y + YR C GT + TIM+Y GCP+ R N F+NPD++Y +Q GT D AR ++E
Sbjct: 34 IWTGTVKE-SEDFD-GLPRSISMTWTADCSTQNFVVQMISPAKDGGVDTMVSLPNPSNGENFLLATVHHNSIDEIDVEDDIGRRLQIADSVGEQTNLRQGVQRSALDDGSEILTPRRLLAKEAERGIERARLDDPDIDAKDNDIRQLQEYRSASPE---GQEAFHERGLRRLSEDNVVMPGGRVLSSETV-IDVLVLYTEKAMLESDSGDGAGRSIAQMESDIATAYQGANNALSASGVNFSVRIVHMEQAPF-----DESDSIVDDVRAIQKNEGVHKLRDEYGADLVQLIGYYLNTCGVGFTMGSPSSGFAQYGYSVVHTNCLSNFSHIHELGHNFGANHNKENAGGSDGVDAYNYAYRNCEVGTKFRTIMAYSSGCPSTPRVNVFSNPDLTYANQRQGTENADNARVLNE 435
BLAST of mRNA_Ecto-sp13_S_contig1059.546.1 vs. uniprot
Match: A0A7V9NMC2_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7V9NMC2_9BACT) HSP 1 Score: 116 bits (291), Expect = 6.620e-25 Identity = 83/224 (37.05%), Postives = 118/224 (52.68%), Query Frame = 1
Query: 415 IQVLVLYTNISLVLMGVSDVQMETMVSAAISTVNVGFENSNIGIETTTVYKGRLPYYHDYTDDSSTKLSDLRENEEVNALRDEYGADIVLLVDYLRDACGIAYFLTNEYSTESEWAYAAVSPNC-FDNLVIGHEFGHNLGCAHNREHSS-IEMEYAHGYRYCSGTTYITIMSYQE----GCPAARANYFANPDVSYLDQPTGTGTE-DCARAIDENKEAVSNFR 1065
I VL++YT G D Q + A++T N + NS I + + Y T T LS +R N EVNALR+ + AD+V LV DACGI Y + + S + Y + NC NL + HEFGHN+G AHN E+S+ Y+HG+ Y +G + T+MSY + GCP RA Y +NP +S+ PTG + D R+I+ + V++FR
Sbjct: 195 IDVLIVYTTAVKNFFG-GDAQAQAFAQQAVATTNTVYRNSQIRQRLRLAHAQEIVYTESGT--GGTDLSSVRTNAEVNALRETHKADLVGLVVNTMDACGIGYLMNVLGTGFSPYGYTVTARNCAVGNLSLAHEFGHNMGSAHNPENSTGAAFPYSHGH-YVNGV-FRTVMSYTDPCTSGCP--RAPYLSNPSISFNGYPTGIANQRDNVRSINNTADTVASFR 411
BLAST of mRNA_Ecto-sp13_S_contig1059.546.1 vs. uniprot
Match: A0A6H5JDN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN0_9PHAE) HSP 1 Score: 112 bits (279), Expect = 1.770e-23 Identity = 82/244 (33.61%), Postives = 123/244 (50.41%), Query Frame = 1
Query: 388 RKLQSDPVEIQVLVLYTNISLVLM------GVSDVQMETMVSAAISTVNVGFENSNIGIETTTVYKGRLPYYHDYTDDSSTKLSDLRENEEVNALRDEYGADIVLLVDYLRDACGIAYFLTNEY----------------STESEWAYAAVSPNCFDNLVIGHEFGHNLGCAHNREH---SSIEMEYAHGYRYCS-GTTYITIMSYQEGCPAA-RANYFANPDVSYLDQPTGTGTEDCARAIDE 1038
R L S+ V I VLVLYT +++ G S QME+ ++ A N S + V+ + P+ D +D + L++NE V+ LRDEYGAD+V L+ Y + CG+ +++ + S +++ Y+ V NC N HE GHN G HN+E+ S Y + YR C GT + TIM+Y GCP+ R N F+NPD++Y +Q GT + AR ++E
Sbjct: 187 RVLSSETV-IDVLVLYTEKAMLESNSVDGAGRSIAQMESDIATAYQGANNALSASGVNFSVRIVHMEQAPF--DESDSIVDDVRALQKNEGVHKLRDEYGADLVQLIGYYLNTCGVGSKVSSFFALYPARTHRFTMGTPSSGFAQYGYSVVHTNCLSNFSHIHELGHNFGANHNKENVGGSGGVDAYNYAYRNCDVGTKFRTIMAYSSGCPSTPRVNVFSNPDLTYANQRQGTENANNARVLNE 427
BLAST of mRNA_Ecto-sp13_S_contig1059.546.1 vs. uniprot
Match: A0A839HE77_9GAMM (Fibronectin type III domain-containing protein n=1 Tax=Thiospirillum jenense TaxID=1653858 RepID=A0A839HE77_9GAMM) HSP 1 Score: 111 bits (277), Expect = 9.200e-23 Identity = 76/231 (32.90%), Postives = 125/231 (54.11%), Query Frame = 1
Query: 415 IQVLVLYTNISLVLMGVSDVQMETMVSAAISTVNVGFENSNIGIETTTVYKGRLPYYHDYTDDSSTKLSDLREN-----EEVNALRDEYGADIVLLVDYLRDACGIAYFLTNEYSTES--EWAYAAVSPNCFDNLVIGHEFGHNLGCAHNREH--SSIEMEYAHGYRYCSGTTYITIMSYQEGCPAA-----RANYFANPDVSYLDQPTGTGTEDCARAIDENKEAVSNFR 1065
I ++V+Y+ ++ MG D +++ ++AAI+ N ++NS I + VY G++ Y T T L+ L+ ++++ALRD+Y AD+V+LVD D CG Y + + Y++ + +A+A V+ +C + HE GH G HN E S+ Y++GYR C + IMSY CP R +F+NP+V+Y TG+ T + A+ I+ V+NFR
Sbjct: 280 IDLMVVYSPQAVSKMGTEDA-LKSTITAAIAAANTAYDNSQINVALNPVYYGQVNYTEPAT--MPTALTQLQSKTDGIIDDIHALRDQYSADLVVLVDTNTDYCGYGYIMNSSYTSSAFAPYAFAVVNYSCLSLNSLAHEIGHLQGNQHNTESTTSTGAYSYSYGYRVCG--IFRDIMSYD--CPTPNTGTPRVLHFSNPNVTYQGLATGSSTANAAQTINNTAAIVANFR 503
BLAST of mRNA_Ecto-sp13_S_contig1059.546.1 vs. uniprot
Match: UPI00037429D7 (M12 family metallo-peptidase n=2 Tax=Methylobacter TaxID=429 RepID=UPI00037429D7) HSP 1 Score: 110 bits (274), Expect = 2.290e-22 Identity = 73/211 (34.60%), Postives = 117/211 (55.45%), Query Frame = 1
Query: 481 ETMVSAAISTVNVGFENSNIGIETTTVYKGRLPYYHDYTDDSSTKLSDLRENEE-----VNALRDEYGADIVLLVDYLRDACGIAYFLTNEYSTESEWAYAAVSPN----CFDNLVIGHEFGHNLGCAHNREHSSIE--MEYAHGYRYCSGTTYITIMSYQEGCPA-ARANYFANPDVSYLD-QPTGTGTEDCARAIDENKEAVSNFRDKV 1074
E ++ A++ N + NS + ++ VY G + Y T + +T L+DLR + V+ LR++YGAD VLLV + CGIAY ++N ++ + +A+ V + C + + HE GHN G H++ +SS +Y++GYR C + T+MSY C AR +YF+NP+VS Q TGT TE+ A +++ K V+ FR +
Sbjct: 210 EAKIANAVAKANQAYINSKVDMQLNVVYMGEVSYNE--TGNMTTSLTDLRGTNDGKMDAVHNLRNQYGADQVLLVTADTNYCGIAYVMSNPSTSFAPYAFGVVHDDSTYACLSDNTLAHELGHNQGDQHDKANSSSAGAYDYSYGYRLCQTGGFRTVMSYS--CSGGARVSYFSNPNVSLTTGQTTGTATENNALSMNNTKAIVAAFRSTI 416
BLAST of mRNA_Ecto-sp13_S_contig1059.546.1 vs. uniprot
Match: UPI00135B5B8B (M12 family metallo-peptidase n=1 Tax=Methylicorpusculum oleiharenae TaxID=1338687 RepID=UPI00135B5B8B) HSP 1 Score: 105 bits (262), Expect = 8.270e-21 Identity = 75/232 (32.33%), Postives = 122/232 (52.59%), Query Frame = 1
Query: 415 IQVLVLYTNISLV-LMGVSDVQMETMVSAAISTVNVGFENSNIGIETTTVYKGRLPYYHDYTDDSSTKLSDLRENEE-----VNALRDEYGADIVLLVDYLRDACGIAYFLTNEYSTESEWAYAAVSPN----CFDNLVIGHEFGHNLGCAHNREH--SSIEMEYAHGYRYCSGTTYITIMSYQEGCPAARANYFANPDVSYLDQPTGTGTEDCARAIDENKEAVSNFRDKV 1074
I V+V+YT S + G S + E + A++ N + NS I ++ V+ + Y + +ST LSD+ + V+ LR++YGAD V+L+ ACG Y +++ ++ + +A++ V + C N + HE GHN G H+R S+ +Y++GYR C + T+MSY + R YF+NP V++ + TGT TED AR++ K V+ FR V
Sbjct: 234 IDVMVVYTPQSRINAYGQSGI--EAKIVNAVAKANQSYINSQIDMQINLVHMAEVSYVE--SGSTSTSLSDITGTSDGKMDAVHTLRNQYGADQVVLITTDTSACGTGYLMSSPSTSFASYAFSVVHDDSKYACLSNHTLAHELGHNQGSHHDRASATSTPAYDYSYGYRLCQTGGFRTVMSY-DCSGGTRVGYFSNPKVTFNGEYTGTATEDNARSMTNTKAIVAAFRGTV 460
BLAST of mRNA_Ecto-sp13_S_contig1059.546.1 vs. uniprot
Match: A0A2V8SWR0_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8SWR0_9BACT) HSP 1 Score: 103 bits (257), Expect = 1.950e-20 Identity = 69/220 (31.36%), Postives = 108/220 (49.09%), Query Frame = 1
Query: 415 IQVLVLYTNISLVLMGVSDVQMETMVSAAISTVNVGFENSNIGIETTTVYKGRLPYYHDYTDDSSTKLSDLRENEEVNALRDEYGADIVLLVDYLRDACGIAYFLTNEYSTESEWAYAAVSPNCFDNLVIGHEFGHNLGCAHNREHSSIEMEYAHGYRYCSGTTYITIMSYQEGCPAA--RANYFANPDVSYLDQPTG-TGTEDCARAIDENKEAVSNFR 1065
I VL++YT + +G D Q + + +A+ N + NS I V+ Y D ST LS+LR N + ALR+ + AD+V + + CGI Y + ++ V NL HE GHN+G HN E+ S + +G+ + +Y T+M+Y + C + R YF+NP+V YL+ PTG D AR+I+ + V+ +R
Sbjct: 185 IDVLIVYTTATKTFLG-GDAQAQALAQSAVDAANTAYLNSRIRQRLRLVHSQEFAYTEI---DPSTDLSNLRANATIGALRNTHNADLVSEISEVTGVCGIGYLMGVPSGNQNNAFTVTVRSCAVGNLSFAHELGHNMGSQHNPENGS-NPTFPYGFGHNVNGSYRTVMAYVDPCTSGCTRVPYFSNPNVIYLNTPTGINNARDNARSINNTADTVAAYR 399 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1059.546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1059.546.1 >prot_Ecto-sp13_S_contig1059.546.1 ID=prot_Ecto-sp13_S_contig1059.546.1|Name=mRNA_Ecto-sp13_S_contig1059.546.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=405bp KIWNGVVIDPAPDADEAFPRGVSMTWGEVCDIETFSLKVSKHTVEGNTSAback to top mRNA from alignment at Ecto-sp13_S_contig1059:45..8692+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1059.546.1 ID=mRNA_Ecto-sp13_S_contig1059.546.1|Name=mRNA_Ecto-sp13_S_contig1059.546.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8648bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1059:45..8692+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1059:45..8692+ >mRNA_Ecto-sp13_S_contig1059.546.1 ID=mRNA_Ecto-sp13_S_contig1059.546.1|Name=mRNA_Ecto-sp13_S_contig1059.546.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1215bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1059:45..8692+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |