mRNA_Ecto-sp13_S_contig10582.541.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10582.541.1
Unique NamemRNA_Ecto-sp13_S_contig10582.541.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10582.541.1 vs. uniprot
Match: A0A6H5JGW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW9_9PHAE)

HSP 1 Score: 292 bits (748), Expect = 2.220e-94
Identity = 139/158 (87.97%), Postives = 148/158 (93.67%), Query Frame = -1
Query:    1 TTPQILIAEVVDGGSDNGTLIATYKSDFPGNYLVYVDEVEPSEKSEGLPILGSPFSLTIAGDAPTLDVNSLPVCSSHEDANNHIADTFWRPGTWLSSNVASTAHGVLRNGWVFQPKSCVFDTFSYEDLMLLASLDNEPTWLLVLGGSVQRGVFLTLID 474
            TTPQILIAEV D GS NGTL ATYKSDFPG+YLVY+DEVE S+K EG+PILGSPFSLTIAGDAPTLDVNSLPVCS+H+DAN +IADTFWR GTWLSS+VAS AHGV+RNGWVFQPKSCVFDTFSYEDLMLLASLD EPTWLLVLGGSVQRGVFLTLID
Sbjct:   10 TTPQILIAEVADDGSKNGTLTATYKSDFPGDYLVYIDEVESSKKDEGVPILGSPFSLTIAGDAPTLDVNSLPVCSTHDDANKNIADTFWRSGTWLSSSVASAAHGVMRNGWVFQPKSCVFDTFSYEDLMLLASLDGEPTWLLVLGGSVQRGVFLTLID 167          
BLAST of mRNA_Ecto-sp13_S_contig10582.541.1 vs. uniprot
Match: D8LHZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHZ4_ECTSI)

HSP 1 Score: 291 bits (746), Expect = 3.390e-94
Identity = 138/155 (89.03%), Postives = 146/155 (94.19%), Query Frame = -1
Query:    1 QILIAEVVDGGSDNGTLIATYKSDFPGNYLVYVDEVEPSEKSEGLPILGSPFSLTIAGDAPTLDVNSLPVCSSHEDANNHIADTFWRPGTWLSSNVASTAHGVLRNGWVFQPKSCVFDTFSYEDLMLLASLDNEPTWLLVLGGSVQRGVFLTLID 465
            QILIAEVVDGGS NGTL ATYKSDFPG+YLVY+DEVE S+K EG+PILGSPFSLTIAGDAPTLD+NSLPVCS+HEDAN  IADTFWR GTWLSSNVAS AHGV+RNGWVFQPKSCVFDTFSYEDLMLLASLD EPTWLLVLGGSVQRGVFLTL+D
Sbjct:  109 QILIAEVVDGGSKNGTLTATYKSDFPGDYLVYIDEVESSKKDEGVPILGSPFSLTIAGDAPTLDINSLPVCSTHEDANKDIADTFWRSGTWLSSNVASAAHGVMRNGWVFQPKSCVFDTFSYEDLMLLASLDGEPTWLLVLGGSVQRGVFLTLVD 263          
BLAST of mRNA_Ecto-sp13_S_contig10582.541.1 vs. uniprot
Match: A0A6H5K539_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K539_9PHAE)

HSP 1 Score: 286 bits (732), Expect = 1.860e-92
Identity = 136/155 (87.74%), Postives = 143/155 (92.26%), Query Frame = -1
Query:    1 QILIAEVVDGGSDNGTLIATYKSDFPGNYLVYVDEVEPSEKSEGLPILGSPFSLTIAGDAPTLDVNSLPVCSSHEDANNHIADTFWRPGTWLSSNVASTAHGVLRNGWVFQPKSCVFDTFSYEDLMLLASLDNEPTWLLVLGGSVQRGVFLTLID 465
            +ILIAEV DGGS NGTL ATYKSDFPG+YLVY+DEVE S+K EG+PILGSPFSLTIAGDAPTLDVNSLPVCS+HED N  I DTFWR GTWLSSNVAS AHGV+RNGWVFQPKSCVFDTFSYEDLMLLASLD EPTWLLVLGGSVQRGVFLTLID
Sbjct:   92 EILIAEVADGGSKNGTLTATYKSDFPGDYLVYIDEVESSKKDEGVPILGSPFSLTIAGDAPTLDVNSLPVCSTHEDTNKDIPDTFWRSGTWLSSNVASAAHGVMRNGWVFQPKSCVFDTFSYEDLMLLASLDGEPTWLLVLGGSVQRGVFLTLID 246          
BLAST of mRNA_Ecto-sp13_S_contig10582.541.1 vs. uniprot
Match: A0A6H5K8P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8P1_9PHAE)

HSP 1 Score: 275 bits (704), Expect = 5.920e-87
Identity = 127/159 (79.87%), Postives = 145/159 (91.19%), Query Frame = -1
Query:    1 CTTPQILIAEVVDGGSDNGTLIATYKSDFPGNYLVYVDEVEPSEKSEGLPILGSPFSLTIAGDAPTLDVNSLPVCSSHEDANNHIADTFWRPGTWLSSNVASTAHGVLRNGWVFQPKSCVFDTFSYEDLMLLASLDNEPTWLLVLGGSVQRGVFLTLID 477
            C+  QILIAEVV  GS+NGTL ATY+SDFPG+YLV+V+EV+PS++ EGLPI+GSPFSLTI GD PTLDV+SLPVC S +D +N IADTFWRPGTWLSSNVAS AHGV+RNGWVFQPKSCVFDTFSY+DLMLLASLD EPTWL+V+GGSVQRGVFLTL+D
Sbjct:   35 CSKDQILIAEVVGDGSNNGTLTATYQSDFPGDYLVHVEEVQPSKRGEGLPIVGSPFSLTITGDGPTLDVDSLPVCGSQDDGSNDIADTFWRPGTWLSSNVASAAHGVMRNGWVFQPKSCVFDTFSYQDLMLLASLDGEPTWLVVVGGSVQRGVFLTLVD 193          
BLAST of mRNA_Ecto-sp13_S_contig10582.541.1 vs. uniprot
Match: A0A6H5JGZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGZ7_9PHAE)

HSP 1 Score: 275 bits (703), Expect = 6.150e-87
Identity = 131/155 (84.52%), Postives = 142/155 (91.61%), Query Frame = -1
Query:    1 QILIAEVVDGGSDNGTLIATYKSDFPGNYLVYVDEVEPSEKSEGLPILGSPFSLTIAGDAPTLDVNSLPVCSSHEDANNHIADTFWRPGTWLSSNVASTAHGVLRNGWVFQPKSCVFDTFSYEDLMLLASLDNEPTWLLVLGGSVQRGVFLTLID 465
            QIL AEVVDGG  +GTL ATYKSDFPGNY V+++EV+ S+K EG+PILGSPFSLTIAGDAPTL+VNSLPVCSS EDAN  IADTFWRPGTWLSSNVAS AHGV+RNGWVFQPKSCVFDTFSYEDLMLLAS+  EPTWLLVLGGSV+RGVFLTLID
Sbjct:  116 QILTAEVVDGGRKDGTLTATYKSDFPGNYSVHIEEVQLSKKGEGVPILGSPFSLTIAGDAPTLNVNSLPVCSSDEDANTDIADTFWRPGTWLSSNVASAAHGVMRNGWVFQPKSCVFDTFSYEDLMLLASIGGEPTWLLVLGGSVERGVFLTLID 270          
BLAST of mRNA_Ecto-sp13_S_contig10582.541.1 vs. uniprot
Match: D7FXD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXD9_ECTSI)

HSP 1 Score: 270 bits (690), Expect = 8.140e-86
Identity = 128/155 (82.58%), Postives = 141/155 (90.97%), Query Frame = -1
Query:    1 QILIAEVVDGGSDNGTLIATYKSDFPGNYLVYVDEVEPSEKSEGLPILGSPFSLTIAGDAPTLDVNSLPVCSSHEDANNHIADTFWRPGTWLSSNVASTAHGVLRNGWVFQPKSCVFDTFSYEDLMLLASLDNEPTWLLVLGGSVQRGVFLTLID 465
            QILIAE+V G  + GTL ATYKSDFPG+YLVYV+EV+PSE+ EGLPI+GSPFSL IAGD PTLDVNSLPVC S ED +N IADTFWRPGTWLSSNVAS AHGV+RNGWVFQPKSCVFDTFSY+DLMLLASLD EPTWL+V+GGSVQRGVFLTL+D
Sbjct:  129 QILIAEIV-GDGNTGTLTATYKSDFPGDYLVYVEEVQPSEQGEGLPIVGSPFSLKIAGDFPTLDVNSLPVCDSQEDGSNDIADTFWRPGTWLSSNVASAAHGVMRNGWVFQPKSCVFDTFSYQDLMLLASLDGEPTWLVVVGGSVQRGVFLTLVD 282          
BLAST of mRNA_Ecto-sp13_S_contig10582.541.1 vs. uniprot
Match: D7FXE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE0_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 7.080e-84
Identity = 124/155 (80.00%), Postives = 140/155 (90.32%), Query Frame = -1
Query:    1 QILIAEVVDGGSDNGTLIATYKSDFPGNYLVYVDEVEPSEKSEGLPILGSPFSLTIAGDAPTLDVNSLPVCSSHEDANNHIADTFWRPGTWLSSNVASTAHGVLRNGWVFQPKSCVFDTFSYEDLMLLASLDNEPTWLLVLGGSVQRGVFLTLID 465
            QILIAEVV  GS+NGTL ATYKSDFPG+YLV+V+EV+PSE+ EGLPI+GSPFSL IAGD PTLDV+SLPVC S +D +  IADTFWRPGTWLS+NVAS AHGV+R GWVFQPKSCVFDTFSY+DLMLLAS D EPTWL+V+GGSVQRGVFLTL+D
Sbjct:   54 QILIAEVVGDGSNNGTLTATYKSDFPGDYLVHVEEVQPSERGEGLPIVGSPFSLKIAGDFPTLDVHSLPVCGSQDDGSTDIADTFWRPGTWLSANVASAAHGVMRTGWVFQPKSCVFDTFSYQDLMLLASPDGEPTWLVVVGGSVQRGVFLTLVD 208          
BLAST of mRNA_Ecto-sp13_S_contig10582.541.1 vs. uniprot
Match: D7G348_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G348_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 3.020e-62
Identity = 108/155 (69.68%), Postives = 109/155 (70.32%), Query Frame = -1
Query:    1 QILIAEVVDGGSDNGTLIATYKSDFPGNYLVYVDEVEPSEKSEGLPILGSPFSLTIAGDAPTLDVNSLPVCSSHEDANNHIADTFWRPGTWLSSNVASTAHGVLRNGWVFQPKSCVFDTFSYEDLMLLASLDNEPTWLLVLGGSVQRGVFLTLID 465
            QILIAEVVD GS NGTL ATYKSDFPG Y VY+DEVE S K                                  DANN IADTFWRPGTWLSSNVAS AHGVLRNGWVFQP SCV DTFSYEDLMLLASLD EPTWLLVLGGSVQRGVFLTLID
Sbjct:   49 QILIAEVVDDGSKNGTLTATYKSDFPGTYWVYIDEVELSRK----------------------------------DANNDIADTFWRPGTWLSSNVASAAHGVLRNGWVFQPISCVLDTFSYEDLMLLASLDKEPTWLLVLGGSVQRGVFLTLID 169          
BLAST of mRNA_Ecto-sp13_S_contig10582.541.1 vs. uniprot
Match: D7FLN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLN2_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 8.180e-50
Identity = 92/170 (54.12%), Postives = 118/170 (69.41%), Query Frame = -1
Query:    1 TTPQILIAEVVDGGSDNGTLIATYKSDFPGNYLVYVDEV------------EPSEKSEGLPILGSPFSLTIAGDAPTLDVNSLPVCSSHEDANNHIADTFWRPGTWLSSNVASTAHGVLRNGWVFQPKSCVFDTFSYEDLMLLASLDNEPTWLLVLGGSVQRGVFLTLID 474
            +T  +L A VVD G  +GTL ATY+S +PG+YLV+V +V             P E+++   I+ SPF LTI+G+   +DV+ LP+C + E       DTFWR G+W+SS  AS  HGVLR+GWVFQPK+CV DTFSY+DLMLLA+   EPTWLL+LG SVQRGVFLTL+D
Sbjct:   13 STDHVLHAAVVDNG--DGTLTATYESPYPGDYLVHVQDVCTDMSVVGRGKKRPGERAKA--IVDSPFRLTISGEI-AVDVDDLPLCDA-EHPQEDEEDTFWRTGSWISSKFASAKHGVLRDGWVFQPKTCVHDTFSYDDLMLLATGSKEPTWLLILGTSVQRGVFLTLVD 176          
BLAST of mRNA_Ecto-sp13_S_contig10582.541.1 vs. uniprot
Match: D8LJ62_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ62_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 9.460e-50
Identity = 86/158 (54.43%), Postives = 117/158 (74.05%), Query Frame = -1
Query:    1 QILIAEVVDGGSDNGTLIATYKSDFPGNYLVYVDEVEPSEKSE---GLPILGSPFSLTIAGDAPTLDVNSLPVCSSHEDANNHIADTFWRPGTWLSSNVASTAHGVLRNGWVFQPKSCVFDTFSYEDLMLLASLDNEPTWLLVLGGSVQRGVFLTLID 465
             + +A V + G  NGTL A Y+S FPG+YLV+V++V    +     G PI+GSPFSLT++GD P +DV++LPVC   E     +A ++WR G+W+SSN+A+  HGVLR+GWVFQPK+CV++ FSY+DLMLLA LD EP WLL LG S+ RG+FLT++D
Sbjct:  131 NVFVAGVRNNG--NGTLTAAYESSFPGDYLVHVEDVNLKVQDHFGRGRPIIGSPFSLTVSGD-PAVDVDALPVCGG-EGEEEDLASSYWRTGSWVSSNIAARNHGVLRDGWVFQPKTCVYEAFSYDDLMLLAGLD-EPAWLLALGNSILRGIFLTILD 283          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10582.541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JGW9_9PHAE2.220e-9487.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHZ4_ECTSI3.390e-9489.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K539_9PHAE1.860e-9287.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8P1_9PHAE5.920e-8779.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGZ7_9PHAE6.150e-8784.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXD9_ECTSI8.140e-8682.58Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FXE0_ECTSI7.080e-8480.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G348_ECTSI3.020e-6269.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FLN2_ECTSI8.180e-5054.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJ62_ECTSI9.460e-5054.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10582contigEcto-sp13_S_contig10582:2850..3332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size483
Hectar predicted targeting categoryother localisation
Exons1
Cds size483
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462539.7322757-CDS-Ecto-sp13_S_contig10582:2849..33321681462539.7322757-CDS-Ecto-sp13_S_contig10582:2849..3332Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10582 2850..3332 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10582.541.1prot_Ecto-sp13_S_contig10582.541.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10582 2850..3332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10582.541.1

>prot_Ecto-sp13_S_contig10582.541.1 ID=prot_Ecto-sp13_S_contig10582.541.1|Name=mRNA_Ecto-sp13_S_contig10582.541.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp
VYQGQKHAPLDRTPQHQKPCRLVVQAGKEHEILVRKRVENTRFRLKHPPV
SQYSMRRTRHVRGKPCPGPPKCIRDVVVGIFVGATNWEGVDVQCRGIACN
RERERAAQDRKALTLLGRLDFIDVHQVIPGEIALVGGDQSAVVAAAVNNL
RDQDLRCRAM*
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mRNA from alignment at Ecto-sp13_S_contig10582:2850..3332+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10582.541.1 ID=mRNA_Ecto-sp13_S_contig10582.541.1|Name=mRNA_Ecto-sp13_S_contig10582.541.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10582:2850..3332+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCTATCAAGGTCAGAAACACGCCCCTTTGGACCGAACCCCCCAACACCA GAAGCCATGTCGGCTCGTTGTCCAGGCTGGCAAGGAGCATGAGATCCTCG TACGAAAACGTGTCGAAAACACACGATTTCGGCTGAAACACCCACCCGTT TCTCAATACTCCATGCGCCGTACTCGCCACGTTCGAGGAAAGCCATGTCC CGGGCCTCCAAAATGTATCCGCGATGTGGTTGTTGGCATCTTCGTGGGAG CTACAAACTGGGAGGGAGTTGACGTCCAGTGTCGGGGCATCGCCTGCAAT CGTGAGAGAGAACGGGCTGCCCAAGATAGGAAGGCCCTCACTCTTCTCGG AAGGCTCGACTTCATCGACGTACACCAAGTAATTCCCGGGGAAATCGCTC TTGTAGGTGGCGATCAGAGTGCCGTTGTCGCTGCCGCCGTCAACAACCTC CGCGATCAAGATCTGCGGTGTCGTGCAATGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10582:2850..3332+

>mRNA_Ecto-sp13_S_contig10582.541.1 ID=mRNA_Ecto-sp13_S_contig10582.541.1|Name=mRNA_Ecto-sp13_S_contig10582.541.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10582:2850..3332+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCTATCAAGGTCAGAAACACGCCCCTTTGGACCGAACCCCCCAACACCA
GAAGCCATGTCGGCTCGTTGTCCAGGCTGGCAAGGAGCATGAGATCCTCG
TACGAAAACGTGTCGAAAACACACGATTTCGGCTGAAACACCCACCCGTT
TCTCAATACTCCATGCGCCGTACTCGCCACGTTCGAGGAAAGCCATGTCC
CGGGCCTCCAAAATGTATCCGCGATGTGGTTGTTGGCATCTTCGTGGGAG
CTACAAACTGGGAGGGAGTTGACGTCCAGTGTCGGGGCATCGCCTGCAAT
CGTGAGAGAGAACGGGCTGCCCAAGATAGGAAGGCCCTCACTCTTCTCGG
AAGGCTCGACTTCATCGACGTACACCAAGTAATTCCCGGGGAAATCGCTC
TTGTAGGTGGCGATCAGAGTGCCGTTGTCGCTGCCGCCGTCAACAACCTC
CGCGATCAAGATCTGCGGTGTCGTGCAATGTAA
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