mRNA_Ecto-sp13_S_contig10580.540.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10580.540.1
Unique NamemRNA_Ecto-sp13_S_contig10580.540.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10580.540.1 vs. uniprot
Match: D8LIN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIN4_ECTSI)

HSP 1 Score: 447 bits (1149), Expect = 1.910e-151
Identity = 228/240 (95.00%), Postives = 229/240 (95.42%), Query Frame = 1
Query:    1 MINYWKPTLTLGQLDFTAIFQRNHIPSSFAGHITFQSSTGNYHPVLYVNEFWLQQKHLVALNSTVESVDLELSISPISLWKFQTMSQLESQWTAQAKIGMAGDGEQDTFRELLAETNPIVLVITMIVSLLHSVFNFLAFKNDISFWKDKKRSLEGISVRGMLVNLFFQAVIFLYLADNDTTYMILVTNAIGLAIEASSLLFAVWKVGRFMVGRLDWGGEDGQPRRRVPRMTFQAKESYRK 720
            MINYWKPTLTLGQLDFTAIFQRNHIPSSFAGHITFQSSTGNYHPVLYVNEFWLQQKHL+ALNSTVESVDLELSISPISLWKFQTMSQLESQW AQAKIGMAGDGEQDTFRELLAETNPIVLVITMIVSLLHSVFNFLAFKNDISFWKDKKRSLEGISVRGMLVNLFFQAVIFL LADNDTTYMILVTNAIGLAIE       VWKVGRFMVGRLDWGGEDGQPRR VPRM FQAKESYRK
Sbjct:  296 MINYWKPTLTLGQLDFTAIFQRNHIPSSFAGHITFQSSTGNYHPVLYVNEFWLQQKHLLALNSTVESVDLELSISPISLWKFQTMSQLESQWAAQAKIGMAGDGEQDTFRELLAETNPIVLVITMIVSLLHSVFNFLAFKNDISFWKDKKRSLEGISVRGMLVNLFFQAVIFLSLADNDTTYMILVTNAIGLAIE-------VWKVGRFMVGRLDWGGEDGQPRRWVPRMMFQAKESYRK 528          
BLAST of mRNA_Ecto-sp13_S_contig10580.540.1 vs. uniprot
Match: A0A836CN46_9STRA (Cleft lip and palate transmembrane protein 1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN46_9STRA)

HSP 1 Score: 240 bits (613), Expect = 1.310e-71
Identity = 119/238 (50.00%), Postives = 168/238 (70.59%), Query Frame = 1
Query:    7 NYWKPTLTLGQLDFTAIFQRNHIPSSFAGHITFQSSTGNYHPVLYVNEFWLQQKHLVALNSTVESVDLELSISPISLWKFQTMSQLESQWTAQAKIGMAGDGEQDTFRELLAETNPIVLVITMIVSLLHSVFNFLAFKNDISFWKDKKRSLEGISVRGMLVNLFFQAVIFLYLADNDTTYMILVTNAIGLAIEASSLLFAVWKVGRFMVGRLDWGGEDGQPRRRVPRMTFQAKESYRK 720
            N+WKPTL +  +D TA FQRNHIP+ FA  I F ++TGNY+P++ VNEFWLQ KH  ALN+T  +  L +S  P+ L K+Q MSQL  QW  +A++G+  + E D+  ++L +T+P +LV+T ++S LHS+F+FLAFK+D+SFW+ K+RSLEG+SVR M+VN FFQ VI LYL DN+T+Y+ILV++A+GLAIE       +WK+G+    + +W      P R +P +T  A  SY K
Sbjct:  278 NFWKPTLAIQLVDMTADFQRNHIPAVFAEDIKFHAATGNYYPIVVVNEFWLQTKHYTALNATAPAAALAMSYRPVGLGKWQIMSQLARQWRTRARMGLQSESETDSIVDMLGDTSPWLLVLTFLISALHSIFDFLAFKSDVSFWR-KRRSLEGLSVRSMVVNCFFQIVITLYLFDNETSYLILVSSAVGLAIE-------LWKLGKAFSAKCEWA-----PGRLLPSITMTASASYAK 502          
BLAST of mRNA_Ecto-sp13_S_contig10580.540.1 vs. uniprot
Match: M1C5J2_SOLTU (Cleft lip and palate transmembrane protein n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1C5J2_SOLTU)

HSP 1 Score: 199 bits (505), Expect = 3.670e-58
Identity = 100/237 (42.19%), Postives = 149/237 (62.87%), Query Frame = 1
Query:    4 INYWKPTLTLGQLDFTAIFQRNHIPSSFAGHITFQSSTGNYHPVLYVNEFWLQQKHLVALNSTVESVDLELSISPISLWKFQTMSQLESQWTAQAKIGMAGDGEQDTFRELLAETNPIVLVITMIVSLLHSVFNFLAFKNDISFWKDKKRSLEGISVRGMLVNLFFQAVIFLYLADNDTTYMILVTNAIGLAIEASSLLFAVWKVGRFMVGRLDWGGEDGQPRRRVPRMTFQAKESY 714
            I+YWKP +T+  +D    +  N IP   A +I  +S+TGNY+P ++ NEFWL +  L+A+N TV  V L L +SPIS+ K+Q   Q++  +      G   DGE D  + +  E NP +L +TMIVS++HS+F+FLAFKNDI FW +K +S+EG+S + ++VN F Q ++FLYL DNDT++MIL ++ +G  IE        WK+G+ M   +D  G       R+P + F+ +ESY
Sbjct:   36 ISYWKPNVTINLVDDFTRYTANAIPPIVAPYINIESTTGNYYPTVFFNEFWLLRDKLIAINDTVTEVPLHLEVSPISMTKWQLFLQMDQSFQVHRSYGSMLDGESDELKRVFLEGNPYLLGVTMIVSVMHSLFDFLAFKNDIQFW-NKNKSMEGLSAKSVIVNFFCQFIVFLYLLDNDTSWMILASSGVGCCIE-------FWKIGKAMHIEIDRSG-------RIPMLRFRDRESY 257          
BLAST of mRNA_Ecto-sp13_S_contig10580.540.1 vs. uniprot
Match: A0A068V1R3_COFCA (Uncharacterized protein n=1 Tax=Coffea canephora TaxID=49390 RepID=A0A068V1R3_COFCA)

HSP 1 Score: 197 bits (500), Expect = 1.990e-57
Identity = 98/239 (41.00%), Postives = 151/239 (63.18%), Query Frame = 1
Query:    4 INYWKPTLTLGQLDFTAIFQRNHIPSSFAGHITFQSSTGNYHPVLYVNEFWLQQKHLVALNSTVESVDLELSISPISLWKFQTMSQLESQWTAQAKIGMAGDGEQDTFRELLAETNPIVLVITMIVSLLHSVFNFLAFKNDISFWKDKKRSLEGISVRGMLVNLFFQAVIFLYLADNDTTYMILVTNAIGLAIEASSLLFAVWKVGRFMVGRLDWGGEDGQPRRRVPRMTFQAKESYRK 720
            I+YWKP +T+  +D    +Q+N +P + A ++  + +TGNY+P ++ NEFWL +  L+A+N TV  + L L + PIS+ K+Q   Q++  +      G   +GE D  + +  E NP +LV+TMIVSLLHSVF+FLAFKNDI FW +K +S+EG+S + ++V+   Q ++FLYL DNDT++MIL ++ IG  IE        WK+G+ M   +D  G+       +P + F+ +ESY K
Sbjct:   36 ISYWKPNITINLVDDFTRYQQNAVPPNIAPYLNIEPTTGNYYPTVFFNEFWLLRDKLIAINETVTELPLHLEVGPISMTKWQLFLQIDQSFQIHRNYGSMLEGEADELKRVFLEGNPYLLVVTMIVSLLHSVFDFLAFKNDIQFW-NKNKSMEGLSAKSVVVSFVCQLIVFLYLLDNDTSWMILASSGIGCCIE-------FWKIGKAMHIEIDRSGK-------IPMLRFRDRESYAK 259          
BLAST of mRNA_Ecto-sp13_S_contig10580.540.1 vs. uniprot
Match: A0A7N0TZ62_KALFE (Uncharacterized protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TZ62_KALFE)

HSP 1 Score: 200 bits (508), Expect = 5.750e-57
Identity = 98/237 (41.35%), Postives = 151/237 (63.71%), Query Frame = 1
Query:    4 INYWKPTLTLGQLDFTAIFQRNHIPSSFAGHITFQSSTGNYHPVLYVNEFWLQQKHLVALNSTVESVDLELSISPISLWKFQTMSQLESQWTAQAKIGMAGDGEQDTFRELLAETNPIVLVITMIVSLLHSVFNFLAFKNDISFWKDKKRSLEGISVRGMLVNLFFQAVIFLYLADNDTTYMILVTNAIGLAIEASSLLFAVWKVGRFMVGRLDWGGEDGQPRRRVPRMTFQAKESY 714
            ++YWKP +T+  ++  + + ++ +P + A H+  + STGNY+P ++ NEFWL +  L+ LN TV  V L + +SPIS+ K+Q   Q+E  +      G   +GE D  +    E NP +LVITM+VSLLHS+F+FLAFKNDI FW +K +S+EG+S + ++VN   Q ++FLYL DNDT++MIL ++ +G  IE        WK+G+ M+  +D  G       R+PR+ F+ +ESY
Sbjct:  210 VSYWKPNVTVNLVEDFSRYNQHAVPPNIAPHLNVEPSTGNYYPTVFFNEFWLLRDKLIQLNDTVTEVPLNIEVSPISMTKWQLFLQIEQSFQIHRSYGSMLEGETDEMKRAFLEGNPYLLVITMVVSLLHSLFDFLAFKNDIQFW-NKNKSMEGLSAKSVVVNFSSQLIVFLYLLDNDTSWMILASSGVGCCIE-------FWKIGKAMIIEIDRSG-------RIPRLRFKDRESY 431          
BLAST of mRNA_Ecto-sp13_S_contig10580.540.1 vs. uniprot
Match: M1C5J3_SOLTU (Cleft lip and palate transmembrane protein n=16 Tax=Solanoideae TaxID=424551 RepID=M1C5J3_SOLTU)

HSP 1 Score: 199 bits (505), Expect = 1.550e-56
Identity = 100/237 (42.19%), Postives = 149/237 (62.87%), Query Frame = 1
Query:    4 INYWKPTLTLGQLDFTAIFQRNHIPSSFAGHITFQSSTGNYHPVLYVNEFWLQQKHLVALNSTVESVDLELSISPISLWKFQTMSQLESQWTAQAKIGMAGDGEQDTFRELLAETNPIVLVITMIVSLLHSVFNFLAFKNDISFWKDKKRSLEGISVRGMLVNLFFQAVIFLYLADNDTTYMILVTNAIGLAIEASSLLFAVWKVGRFMVGRLDWGGEDGQPRRRVPRMTFQAKESY 714
            I+YWKP +T+  +D    +  N IP   A +I  +S+TGNY+P ++ NEFWL +  L+A+N TV  V L L +SPIS+ K+Q   Q++  +      G   DGE D  + +  E NP +L +TMIVS++HS+F+FLAFKNDI FW +K +S+EG+S + ++VN F Q ++FLYL DNDT++MIL ++ +G  IE        WK+G+ M   +D  G       R+P + F+ +ESY
Sbjct:  217 ISYWKPNVTINLVDDFTRYTANAIPPIVAPYINIESTTGNYYPTVFFNEFWLLRDKLIAINDTVTEVPLHLEVSPISMTKWQLFLQMDQSFQVHRSYGSMLDGESDELKRVFLEGNPYLLGVTMIVSVMHSLFDFLAFKNDIQFW-NKNKSMEGLSAKSVIVNFFCQFIVFLYLLDNDTSWMILASSGVGCCIE-------FWKIGKAMHIEIDRSG-------RIPMLRFRDRESY 438          
BLAST of mRNA_Ecto-sp13_S_contig10580.540.1 vs. uniprot
Match: A0A6P5GSI8_ANACO (cleft lip and palate transmembrane protein 1 homolog n=3 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5GSI8_ANACO)

HSP 1 Score: 198 bits (504), Expect = 2.350e-56
Identity = 99/239 (41.42%), Postives = 149/239 (62.34%), Query Frame = 1
Query:    4 INYWKPTLTLGQLDFTAIFQRNHIPSSFAGHITFQSSTGNYHPVLYVNEFWLQQKHLVALNSTVESVDLELSISPISLWKFQTMSQLESQWTAQAKIGMAGDGEQDTFRELLAETNPIVLVITMIVSLLHSVFNFLAFKNDISFWKDKKRSLEGISVRGMLVNLFFQAVIFLYLADNDTTYMILVTNAIGLAIEASSLLFAVWKVGRFMVGRLDWGGEDGQPRRRVPRMTFQAKESYRK 720
            ++YWKP +T+  +D    +  N+IP + AGH+     TGNY+P +Y NEFWL +  L+ LN TV+ + L L +SPIS+ K+Q   Q+E  +      G   +GE D  + +  E NP +LV+TM+VSLLHSVF+FLAFKNDI FW +K +S+EG+S + ++V+   Q V+FLYL DN+T++MIL ++ +G  IE        WK+G+ M   +D  G+       +P + F+  +SY K
Sbjct:  208 VSYWKPNITINLVDDFTRYPHNNIPQTVAGHLNVDPITGNYYPTVYFNEFWLLRDKLIPLNETVKELPLNLELSPISMTKWQLFLQIEQSFQVHRSYGSMLEGETDELKRVFLEGNPYLLVVTMVVSLLHSVFDFLAFKNDIQFW-NKNKSMEGLSAKSVVVSFICQLVVFLYLLDNETSWMILASSGVGCCIE-------FWKIGKAMHIEIDRSGK-------IPMLRFRDHDSYAK 431          
BLAST of mRNA_Ecto-sp13_S_contig10580.540.1 vs. uniprot
Match: A0A1Q3AMV3_CEPFO (CLPTM1 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3AMV3_CEPFO)

HSP 1 Score: 199 bits (505), Expect = 2.690e-56
Identity = 97/237 (40.93%), Postives = 149/237 (62.87%), Query Frame = 1
Query:    4 INYWKPTLTLGQLDFTAIFQRNHIPSSFAGHITFQSSTGNYHPVLYVNEFWLQQKHLVALNSTVESVDLELSISPISLWKFQTMSQLESQWTAQAKIGMAGDGEQDTFRELLAETNPIVLVITMIVSLLHSVFNFLAFKNDISFWKDKKRSLEGISVRGMLVNLFFQAVIFLYLADNDTTYMILVTNAIGLAIEASSLLFAVWKVGRFMVGRLDWGGEDGQPRRRVPRMTFQAKESY 714
            ++YWKP +T+  +D    +Q N +P + A ++  + STGNY+P ++ NEFWL +   +ALN TV  + L L + PIS+ K+Q   Q++  +      G   DGE D  + +  E NPI+LV+TM+VSLLHSVF+FLAFKNDI FW +K +S+EG+S + ++V+   Q ++FLYL DNDT++MIL ++ +G  IE        WK+G+ M   +D  G+       +P + F+ +ESY
Sbjct:  252 VSYWKPNITINLVDDFTRYQHNAVPPNIAAYLNVEPSTGNYYPTIFFNEFWLLRDKFIALNETVTKLPLNLEVGPISMTKWQLFLQIDQSFHIHRSYGSMIDGEGDELKRVFLEGNPILLVVTMVVSLLHSVFDFLAFKNDIQFW-NKNKSMEGLSAKSVVVSFISQLIVFLYLLDNDTSWMILASSGVGCCIE-------FWKIGKAMHIEIDRSGK-------IPMLRFRDRESY 473          
BLAST of mRNA_Ecto-sp13_S_contig10580.540.1 vs. uniprot
Match: M4CZP9_BRARP (Uncharacterized protein n=4 Tax=Brassica TaxID=3705 RepID=M4CZP9_BRARP)

HSP 1 Score: 198 bits (503), Expect = 2.870e-56
Identity = 100/237 (42.19%), Postives = 148/237 (62.45%), Query Frame = 1
Query:    4 INYWKPTLTLGQLDFTAIFQRNHIPSSFAGHITFQSSTGNYHPVLYVNEFWLQQKHLVALNSTVESVDLELSISPISLWKFQTMSQLESQWTAQAKIGMAGDGEQDTFRELLAETNPIVLVITMIVSLLHSVFNFLAFKNDISFWKDKKRSLEGISVRGMLVNLFFQAVIFLYLADNDTTYMILVTNAIGLAIEASSLLFAVWKVGRFMVGRLDWGGEDGQPRRRVPRMTFQAKESY 714
            ++ WKP +T+  +D    + ++ +P + A H+  + STGNY+P +Y NEFWL +  ++ +N TV  V LEL ISPIS+ K+Q   Q++  +  Q   G   DGE D  + +  E NP +L ITM VS+LHSVF+FLAFKNDI FW +K +S+EG+S + +++N   Q VIFLYL DNDT++MIL ++ +G+ IE        WK+G+ M   +D  G        +PR+ F  +ESY
Sbjct:  215 VSLWKPNVTINLVDDFTHYSQSGVPPNIAPHLLVEPSTGNYYPTIYFNEFWLLRDKMIPMNETVSEVPLELEISPISMMKWQLFQQVDQSFQMQRSYGSMLDGESDELKRVFLEGNPYLLGITMFVSMLHSVFDFLAFKNDIQFW-NKNKSMEGLSAKSVVLNFICQFVIFLYLLDNDTSWMILASSGVGVCIE-------FWKIGKAMRIEVDRSGM-------IPRLRFHDRESY 436          
BLAST of mRNA_Ecto-sp13_S_contig10580.540.1 vs. uniprot
Match: A0A6I9QNY6_ELAGV (cleft lip and palate transmembrane protein 1 homolog n=5 Tax=Arecaceae TaxID=4710 RepID=A0A6I9QNY6_ELAGV)

HSP 1 Score: 198 bits (503), Expect = 3.130e-56
Identity = 99/239 (41.42%), Postives = 149/239 (62.34%), Query Frame = 1
Query:    4 INYWKPTLTLGQLDFTAIFQRNHIPSSFAGHITFQSSTGNYHPVLYVNEFWLQQKHLVALNSTVESVDLELSISPISLWKFQTMSQLESQWTAQAKIGMAGDGEQDTFRELLAETNPIVLVITMIVSLLHSVFNFLAFKNDISFWKDKKRSLEGISVRGMLVNLFFQAVIFLYLADNDTTYMILVTNAIGLAIEASSLLFAVWKVGRFMVGRLDWGGEDGQPRRRVPRMTFQAKESYRK 720
            ++YWKP +T+  +D    + +N+IP + AG++    +TGNY+P  + NEFWL +  L+ LN TV+ + L L + PIS  K+Q   Q+E  +      G   +GE D  + +  E NP +LV+TM VS+LHSVF+FLAFKNDI FW +K +S+EG+S + ++VN   Q ++FLYL DNDT++MIL ++ IG+ IE        WK+G+ M   +D  G       R+P + F+ +ESY K
Sbjct:  210 VSYWKPNITINLVDDFTRYPQNNIPQNIAGYLNVDPATGNYYPTTFFNEFWLLRDKLIPLNDTVKELPLNLELGPISTTKWQLFLQIEQSFQVHRSYGSMLEGEADELKRVFLEGNPYLLVVTMAVSVLHSVFDFLAFKNDIQFW-NKNKSMEGLSAKSVVVNFICQLIVFLYLLDNDTSWMILASSGIGVCIE-------FWKIGKAMHIEIDRSG-------RIPMLKFRDRESYAK 433          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10580.540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIN4_ECTSI1.910e-15195.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CN46_9STRA1.310e-7150.00Cleft lip and palate transmembrane protein 1-domai... [more]
M1C5J2_SOLTU3.670e-5842.19Cleft lip and palate transmembrane protein n=1 Tax... [more]
A0A068V1R3_COFCA1.990e-5741.00Uncharacterized protein n=1 Tax=Coffea canephora T... [more]
A0A7N0TZ62_KALFE5.750e-5741.35Uncharacterized protein n=1 Tax=Kalanchoe fedtsche... [more]
M1C5J3_SOLTU1.550e-5642.19Cleft lip and palate transmembrane protein n=16 Ta... [more]
A0A6P5GSI8_ANACO2.350e-5641.42cleft lip and palate transmembrane protein 1 homol... [more]
A0A1Q3AMV3_CEPFO2.690e-5640.93CLPTM1 domain-containing protein n=1 Tax=Cephalotu... [more]
M4CZP9_BRARP2.870e-5642.19Uncharacterized protein n=4 Tax=Brassica TaxID=370... [more]
A0A6I9QNY6_ELAGV3.130e-5641.42cleft lip and palate transmembrane protein 1 homol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10580contigEcto-sp13_S_contig10580:447..5043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score445.3
Seed ortholog evalue1.8e-122
Seed eggNOG ortholog2880.D8LIN4
Model size720
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.apoptotic process
EggNOG OGsKOG2489@1,KOG2489@2759
Cds size720
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10580.540.1prot_Ecto-sp13_S_contig10580.540.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10580 447..5043 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462539.6384726-CDS-Ecto-sp13_S_contig10580:446..5601681462539.6384726-CDS-Ecto-sp13_S_contig10580:446..560Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10580 447..560 -
1681462539.6581411-CDS-Ecto-sp13_S_contig10580:1074..12281681462539.6581411-CDS-Ecto-sp13_S_contig10580:1074..1228Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10580 1075..1228 -
1681462539.6690977-CDS-Ecto-sp13_S_contig10580:2354..24731681462539.6690977-CDS-Ecto-sp13_S_contig10580:2354..2473Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10580 2355..2473 -
1681462539.683369-CDS-Ecto-sp13_S_contig10580:3587..36711681462539.683369-CDS-Ecto-sp13_S_contig10580:3587..3671Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10580 3588..3671 -
1681462539.6949155-CDS-Ecto-sp13_S_contig10580:4347..44861681462539.6949155-CDS-Ecto-sp13_S_contig10580:4347..4486Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10580 4348..4486 -
1681462539.7042038-CDS-Ecto-sp13_S_contig10580:4933..50431681462539.7042038-CDS-Ecto-sp13_S_contig10580:4933..5043Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10580 4934..5043 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10580.540.1

>prot_Ecto-sp13_S_contig10580.540.1 ID=prot_Ecto-sp13_S_contig10580.540.1|Name=mRNA_Ecto-sp13_S_contig10580.540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=240bp
MINYWKPTLTLGQLDFTAIFQRNHIPSSFAGHITFQSSTGNYHPVLYVNE
FWLQQKHLVALNSTVESVDLELSISPISLWKFQTMSQLESQWTAQAKIGM
AGDGEQDTFRELLAETNPIVLVITMIVSLLHSVFNFLAFKNDISFWKDKK
RSLEGISVRGMLVNLFFQAVIFLYLADNDTTYMILVTNAIGLAIEASSLL
FAVWKVGRFMVGRLDWGGEDGQPRRRVPRMTFQAKESYRK
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mRNA from alignment at Ecto-sp13_S_contig10580:447..5043-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10580.540.1 ID=mRNA_Ecto-sp13_S_contig10580.540.1|Name=mRNA_Ecto-sp13_S_contig10580.540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4597bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10580:447..5043- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCAACTACTGGAAGCCTACGCTGACGTTGGGGCAGCTAGACTTCAC GGCTATATTTCAGCGCAACCACATCCCATCGTCCTTCGCGGGGCACATCA CCTTCCAGTCGTAAGCTCGGAAGGCAGTTGTCGGTGTCACCTAACAGAAT GTATCCTCGCCTTTCGGTATTTATCCAAACGGCGATAGACGATATCTCCG TGTTGATATGTCAGCAGAAAAATGACCAGTGAGCCCAACTCGGTCCAAGG TCTCTCAGCAGAGGACGAAAAAAAAACGCTTCAAAAGATACATACGTTGG AAGAACACACGACACGGAAAAAGTATCTTGACGGAAACGGAATCAACTGA GAGTTCATTGGTGCACAGAAGCATTTGGAACATATATCTACAACGCGTAG TATGCGTTCTTCTTTGGCCCGCCCTCAAAAGCGTGTTGGTTCTTGCCCGC CCTCAAAGCGTGTTCGTTCGGTTTTCTAGGGTTCAAGACTAAAGGTCTTA AAGGTCTTGGGGTCTCTTTTTTAGTGTGGGTGTTTGTGCCGTTGACGCTC TCCCCAGATCTACGGGCAACTATCACCCGGTGCTCTACGTGAACGAGTTC TGGCTGCAGCAGAAGCACCTGGTGGCCCTCAACTCGACGGTGGAGTCGGT AGACCTGGAGCTCAGCATCTCTCCCATCAGCCTTTGGAAGTTTCAGGTTT GTGTGTGCAACGGGTGGCCAGGCTATGACAACGTGGACTGTCCCTTTGGT TGTTGTTGGCTCTTTGCTGCTCCGGGTTGGCACATTATCGATTCGATCCA GAAAAAGTAAGAGGGCGTTTCACCGCTTGGAGTTCGACACTCAAGTGGGA TGAGGGCAGGGGGGGGATGTACTCATGTAAACGCATGCCGTCGTCCTAAG ACCATTGACCTCGCATTCCTGAGGGACATGCCGGGTTTTGAGGGCACGGG ACGGGGGAGATGTTCGCTGTTTGTTTTTACTTCGTTTTTTCGTCGTTTTC CTGTGACTTGAACCACCCCGACCCATCTGTCCTGCTGCTTACCGCAAAGG TCGCGTTGATGGAGTGAATGACACTCCGTCTTCTAGTTTGTGGATCACAG CGATCTACGTATGTTCGTGCATTCCACGACCTCTTGAAAAAACCCACGGG TCTCTCTCTCGCGCGTTGCACCTCCGCCTGACAAAAACAAGACAAGCCCG ATATCATGTCGTCGTGTCGATAAGGAGACTATTTATTGCAGCTAGATCGA GCGGGTCGAATCACTTCAAGCGAGTAACTCTTTCCTTTTTTTTCCTGGTG TTCCTCGCCCTCTGCGGTTCCCGCGGGTTCCGTGTGCAAACACGTCTTAC GGTTCTGGGGCGGGGGGTGCAGACAATGTCGCAGCTGGAGAGTCAGTGGA CGGCTCAGGCCAAGATCGGCATGGCGGGGGACGGCGAACAGGACACCTTC AGGGAGGTGTGTGTGTCGGTTGTATGTTTTGGCTGAGTTGTGTAACCGCC GTTCTCGTTCGTTTTATGACGACGTTGCTGTCCNNNNNNNNNNTTTTGTA TTTCATTACTTTTTGTCTGTGCCGCAAGAGCCGCCCGCGTTTGTCGCGCT TCTCCTCTCCTTAGTTGACACGTCGGTTTCTGGTGTTTGGAGCGCTTAGA TTAGGCAGTCTACGGCATAGAGACAGATTTGTCTGTGTTCGTTGAGGTGT GTTCCAGTGCTTGATGCACCGCAGGCTTTCCGCATTTTCTGTCTCCCCTT GACATTGACGTTGATGTTTTTTCATCATCCATCGGTCACTCTTTGCCATT TGGTTACGAGTCACCTGTTCGTAAAGTTGTGTTTGTTGTTGTTGTTGTTG TTGTTGTTGTTGTTGTTGTTGTTGTTGTTACTGCTGCTGTTGCTGTGATT TGTTGTTGTTGCTGTTGCTGCGCCTGTTCCTGCTCTTGCTCTTGCTCTTG CTCTTGCTCCTGCTGCTGCTACTGCTTCTGCCGTTGCTGTTGCTATTGTT ATTGTTGCGCCCCCTCATGCCCACCAACTACGCCTCTGGTACTATGTTCC TCACGTTGACCAAAAGTCCATGTCCTACCAGGACGACAAAGAGTGGAGTA TGCTGTCTCACGCGACCTCTCCCCACCCCATGGAAGGAATCCCACATCTT GCGTCCCTCCTTTCGCTATCCCCCCTACCCCGTTACCGCTGTATCTTGCG ATATACCTCACTTGACAAATCTCTTTCAGAGTATCCTCTAGTTGATGTTG TAGTCTCGTGTCAACGTAGATACCTCAAAGCACTTTTTTTTTGTGTGTGG TAGAGGGTGGAGACAAGCCCGTCATGTCGACTCATCACAGCCGTGTGTAG GTGCAAAAATATCGCACTCTAAACCGCCCCGAGTACGTTTTTTTTTATCT TTGTCTCTTTGTCTCGGCATTGGTCCCTGTGTTAACCTTTGTCCTCAACG TTGAGAGATGAACCCGGCTGGTCCTTGGTGGTGAGCATCTTCACCACTTG AGAAGAAAACAAACGAAAACATCTTAAAGCCTTTGTCTCTCCTCGGTATC GCTCCAAAATCGACACGCAGCTGCTGGCGGAGACCAACCCGATCGTGCTC GTGATCACCATGATCGTGTCGCTGCTGCACTCGGTGTTCAACTTCTTGGC GTTCAAGAACGACATCTCCTTCTGGAAGGACAAGAAGAGGTATACTATAA CAAATAGTAGTAGCTGGAAGGACAAGAAGAGGTATACTATAATATATAGC AGTAGCTGGAAGGACAAGAAGAGGTATACTATTAACAAATAGTAGTAGTT GGAAGGACAAGAAGAGGTATACTGGTGGTAGCAGTAGGAAGGACAAAAAG AGGTACACTAGTAGTAAAGCGGGTCATTCAACCATTGCCCTCGCCAAGAA AGTGTACAGTGGGCGGATTCCCCTTTGGTCTCGAACAATTGATCAATCCA CCATGTATGTAGGTGTACACCTGAGGCCGACCGTTGAGAAAAATGCAGCC CCGGAACATGTGGAAGCATAGGAACAACGTAGCACCAAGCTTTCCAGGCC CGCCTCGGGACGCCCACACTTCGAGCGTGTTTGAAACCTACGACAGCTAT TACTTATAATATTTTGTGTAGCTGTATGGCAGCCTTGTCTGTAGGTTCTT TTTTTTTACACAAGAGGGTTACGGTATTGTAGTGGGTCACCCAAGAAGGG CAGTGATGGGATGTGCATATCTGTTTCAAGGAATCACCGTACTGTGCAGG TTGCTTACGATACTCCACACTACACCTGGATCGATTTCAATACTCGTCCG CTCTGCAGCACAAACAGCAGTGACGGTGCCGAAAGTGGCGGCGTTGGAAA CCCTTTCGTCGAGAGCATTTCGAGAAACGCAAACATTTTACATCATGATT GATGGCATCTTCGTTGTCGTGGAGTAATCCAGCTAAATAGATCTGTCCAC GGGTGCGACCTATCTTATGCAACCTACGGTAGGCGTGACGGGTGTGTTGC CACGCTGTATCTTCTACCATGGTTCCCATGGCATGTCTTTTCGGGGCAAC AACAAAAAAAAACACACACACGTCCATGTGCGTACGCACCCGTACACTTT ACAGCGGGTGTTTCTTCGTTTCTTGTGTGTCGAGTGATGCGCACGTTCGT CTGCTGTGTTACGATATCCCCGCTTTGTGTACAGTAAGACGGACGTGCGT CTGCTGTGTTGTGATATCCGCGCGTTGTGTGTGCAGTAAAACGCACGTAA GTCTGCTGTGTTGTGATGTTCCCGCGCTGTCCTTTTTTCTTCTACCGTCG TTTTTCGATTTCTAGATCGTTGGAAGGCATTTCCGTGCGGGGTATGCTAG TCAACCTCTTCTTCCAGGCGGTGATCTTCCTCTACCTGGCGGACAACGAC ACGACTTACATGATTCTCGTCACCAACGCGATAGGGCTGGCCATCGAGGC AAGCAGCCTGTTGTTTGCTGTTCTTGGTGGTGATGATAGTAGTGCTCCTG TTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTATTCTGTTGTTTTTCGTG ATGGTGGTGCTAGTGGTGATGCTAGTGCTGGTTTTGCTGCTGCTGTCGAC ATGGCGAAGTGACCTGTTGCTGTCCTTCTTGACGGTGGTAGTAGGGGTGG TAGTAGGGTGGTGGTGGTGGTGGTGGTGGTGGTGCTGCTGTCGCCGCGAT CAAAGAGTCTGTTGCTGTTTTCCTTGGTGTTGGTCCGTTTGTTGTTGTCG CTGTTGCAACTATCGTGCTTGTGACTTTTGAAACTATAATATGTTTTTGT CGCGACTGGATGGAGGCATCGTGTGCTTTGGTGCAACAGCAGCAGTTCCG TGTAATCTGGTGCTAGTACTCTCATTCTGTGGTCTTTGACACCGTGTACA CTTGACAAAAGTGACGCCTCTTTGGAGGGGTTTCGAACGTTAACGTTAAC GTTAACGTTCGCTCTACATACCGCTGTGTGCAGGTTTGGAAGGTGGGTAG GTTTATGGTCGGTCGGCTGGACTGGGGCGGCGAGGACGGACAGCCTCGCC GACGGGTCCCGAGGATGACGTTCCAGGCTAAGGAGAGCTACCGCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10580:447..5043-

>mRNA_Ecto-sp13_S_contig10580.540.1 ID=mRNA_Ecto-sp13_S_contig10580.540.1|Name=mRNA_Ecto-sp13_S_contig10580.540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=720bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10580:447..5043- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCAACTACTGGAAGCCTACGCTGACGTTGGGGCAGCTAGACTTCAC
GGCTATATTTCAGCGCAACCACATCCCATCGTCCTTCGCGGGGCACATCA
CCTTCCAGTCATCTACGGGCAACTATCACCCGGTGCTCTACGTGAACGAG
TTCTGGCTGCAGCAGAAGCACCTGGTGGCCCTCAACTCGACGGTGGAGTC
GGTAGACCTGGAGCTCAGCATCTCTCCCATCAGCCTTTGGAAGTTTCAGA
CAATGTCGCAGCTGGAGAGTCAGTGGACGGCTCAGGCCAAGATCGGCATG
GCGGGGGACGGCGAACAGGACACCTTCAGGGAGCTGCTGGCGGAGACCAA
CCCGATCGTGCTCGTGATCACCATGATCGTGTCGCTGCTGCACTCGGTGT
TCAACTTCTTGGCGTTCAAGAACGACATCTCCTTCTGGAAGGACAAGAAG
AGATCGTTGGAAGGCATTTCCGTGCGGGGTATGCTAGTCAACCTCTTCTT
CCAGGCGGTGATCTTCCTCTACCTGGCGGACAACGACACGACTTACATGA
TTCTCGTCACCAACGCGATAGGGCTGGCCATCGAGGCAAGCAGCCTGTTG
TTTGCTGTTTGGAAGGTGGGTAGGTTTATGGTCGGTCGGCTGGACTGGGG
CGGCGAGGACGGACAGCCTCGCCGACGGGTCCCGAGGATGACGTTCCAGG
CTAAGGAGAGCTACCGCAAG
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