mRNA_Ecto-sp13_S_contig10580.540.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10580.540.1 vs. uniprot
Match: D8LIN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIN4_ECTSI) HSP 1 Score: 447 bits (1149), Expect = 1.910e-151 Identity = 228/240 (95.00%), Postives = 229/240 (95.42%), Query Frame = 1
Query: 1 MINYWKPTLTLGQLDFTAIFQRNHIPSSFAGHITFQSSTGNYHPVLYVNEFWLQQKHLVALNSTVESVDLELSISPISLWKFQTMSQLESQWTAQAKIGMAGDGEQDTFRELLAETNPIVLVITMIVSLLHSVFNFLAFKNDISFWKDKKRSLEGISVRGMLVNLFFQAVIFLYLADNDTTYMILVTNAIGLAIEASSLLFAVWKVGRFMVGRLDWGGEDGQPRRRVPRMTFQAKESYRK 720
MINYWKPTLTLGQLDFTAIFQRNHIPSSFAGHITFQSSTGNYHPVLYVNEFWLQQKHL+ALNSTVESVDLELSISPISLWKFQTMSQLESQW AQAKIGMAGDGEQDTFRELLAETNPIVLVITMIVSLLHSVFNFLAFKNDISFWKDKKRSLEGISVRGMLVNLFFQAVIFL LADNDTTYMILVTNAIGLAIE VWKVGRFMVGRLDWGGEDGQPRR VPRM FQAKESYRK
Sbjct: 296 MINYWKPTLTLGQLDFTAIFQRNHIPSSFAGHITFQSSTGNYHPVLYVNEFWLQQKHLLALNSTVESVDLELSISPISLWKFQTMSQLESQWAAQAKIGMAGDGEQDTFRELLAETNPIVLVITMIVSLLHSVFNFLAFKNDISFWKDKKRSLEGISVRGMLVNLFFQAVIFLSLADNDTTYMILVTNAIGLAIE-------VWKVGRFMVGRLDWGGEDGQPRRWVPRMMFQAKESYRK 528
BLAST of mRNA_Ecto-sp13_S_contig10580.540.1 vs. uniprot
Match: A0A836CN46_9STRA (Cleft lip and palate transmembrane protein 1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN46_9STRA) HSP 1 Score: 240 bits (613), Expect = 1.310e-71 Identity = 119/238 (50.00%), Postives = 168/238 (70.59%), Query Frame = 1
Query: 7 NYWKPTLTLGQLDFTAIFQRNHIPSSFAGHITFQSSTGNYHPVLYVNEFWLQQKHLVALNSTVESVDLELSISPISLWKFQTMSQLESQWTAQAKIGMAGDGEQDTFRELLAETNPIVLVITMIVSLLHSVFNFLAFKNDISFWKDKKRSLEGISVRGMLVNLFFQAVIFLYLADNDTTYMILVTNAIGLAIEASSLLFAVWKVGRFMVGRLDWGGEDGQPRRRVPRMTFQAKESYRK 720
N+WKPTL + +D TA FQRNHIP+ FA I F ++TGNY+P++ VNEFWLQ KH ALN+T + L +S P+ L K+Q MSQL QW +A++G+ + E D+ ++L +T+P +LV+T ++S LHS+F+FLAFK+D+SFW+ K+RSLEG+SVR M+VN FFQ VI LYL DN+T+Y+ILV++A+GLAIE +WK+G+ + +W P R +P +T A SY K
Sbjct: 278 NFWKPTLAIQLVDMTADFQRNHIPAVFAEDIKFHAATGNYYPIVVVNEFWLQTKHYTALNATAPAAALAMSYRPVGLGKWQIMSQLARQWRTRARMGLQSESETDSIVDMLGDTSPWLLVLTFLISALHSIFDFLAFKSDVSFWR-KRRSLEGLSVRSMVVNCFFQIVITLYLFDNETSYLILVSSAVGLAIE-------LWKLGKAFSAKCEWA-----PGRLLPSITMTASASYAK 502
BLAST of mRNA_Ecto-sp13_S_contig10580.540.1 vs. uniprot
Match: M1C5J2_SOLTU (Cleft lip and palate transmembrane protein n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1C5J2_SOLTU) HSP 1 Score: 199 bits (505), Expect = 3.670e-58 Identity = 100/237 (42.19%), Postives = 149/237 (62.87%), Query Frame = 1
Query: 4 INYWKPTLTLGQLDFTAIFQRNHIPSSFAGHITFQSSTGNYHPVLYVNEFWLQQKHLVALNSTVESVDLELSISPISLWKFQTMSQLESQWTAQAKIGMAGDGEQDTFRELLAETNPIVLVITMIVSLLHSVFNFLAFKNDISFWKDKKRSLEGISVRGMLVNLFFQAVIFLYLADNDTTYMILVTNAIGLAIEASSLLFAVWKVGRFMVGRLDWGGEDGQPRRRVPRMTFQAKESY 714
I+YWKP +T+ +D + N IP A +I +S+TGNY+P ++ NEFWL + L+A+N TV V L L +SPIS+ K+Q Q++ + G DGE D + + E NP +L +TMIVS++HS+F+FLAFKNDI FW +K +S+EG+S + ++VN F Q ++FLYL DNDT++MIL ++ +G IE WK+G+ M +D G R+P + F+ +ESY
Sbjct: 36 ISYWKPNVTINLVDDFTRYTANAIPPIVAPYINIESTTGNYYPTVFFNEFWLLRDKLIAINDTVTEVPLHLEVSPISMTKWQLFLQMDQSFQVHRSYGSMLDGESDELKRVFLEGNPYLLGVTMIVSVMHSLFDFLAFKNDIQFW-NKNKSMEGLSAKSVIVNFFCQFIVFLYLLDNDTSWMILASSGVGCCIE-------FWKIGKAMHIEIDRSG-------RIPMLRFRDRESY 257
BLAST of mRNA_Ecto-sp13_S_contig10580.540.1 vs. uniprot
Match: A0A068V1R3_COFCA (Uncharacterized protein n=1 Tax=Coffea canephora TaxID=49390 RepID=A0A068V1R3_COFCA) HSP 1 Score: 197 bits (500), Expect = 1.990e-57 Identity = 98/239 (41.00%), Postives = 151/239 (63.18%), Query Frame = 1
Query: 4 INYWKPTLTLGQLDFTAIFQRNHIPSSFAGHITFQSSTGNYHPVLYVNEFWLQQKHLVALNSTVESVDLELSISPISLWKFQTMSQLESQWTAQAKIGMAGDGEQDTFRELLAETNPIVLVITMIVSLLHSVFNFLAFKNDISFWKDKKRSLEGISVRGMLVNLFFQAVIFLYLADNDTTYMILVTNAIGLAIEASSLLFAVWKVGRFMVGRLDWGGEDGQPRRRVPRMTFQAKESYRK 720
I+YWKP +T+ +D +Q+N +P + A ++ + +TGNY+P ++ NEFWL + L+A+N TV + L L + PIS+ K+Q Q++ + G +GE D + + E NP +LV+TMIVSLLHSVF+FLAFKNDI FW +K +S+EG+S + ++V+ Q ++FLYL DNDT++MIL ++ IG IE WK+G+ M +D G+ +P + F+ +ESY K
Sbjct: 36 ISYWKPNITINLVDDFTRYQQNAVPPNIAPYLNIEPTTGNYYPTVFFNEFWLLRDKLIAINETVTELPLHLEVGPISMTKWQLFLQIDQSFQIHRNYGSMLEGEADELKRVFLEGNPYLLVVTMIVSLLHSVFDFLAFKNDIQFW-NKNKSMEGLSAKSVVVSFVCQLIVFLYLLDNDTSWMILASSGIGCCIE-------FWKIGKAMHIEIDRSGK-------IPMLRFRDRESYAK 259
BLAST of mRNA_Ecto-sp13_S_contig10580.540.1 vs. uniprot
Match: A0A7N0TZ62_KALFE (Uncharacterized protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TZ62_KALFE) HSP 1 Score: 200 bits (508), Expect = 5.750e-57 Identity = 98/237 (41.35%), Postives = 151/237 (63.71%), Query Frame = 1
Query: 4 INYWKPTLTLGQLDFTAIFQRNHIPSSFAGHITFQSSTGNYHPVLYVNEFWLQQKHLVALNSTVESVDLELSISPISLWKFQTMSQLESQWTAQAKIGMAGDGEQDTFRELLAETNPIVLVITMIVSLLHSVFNFLAFKNDISFWKDKKRSLEGISVRGMLVNLFFQAVIFLYLADNDTTYMILVTNAIGLAIEASSLLFAVWKVGRFMVGRLDWGGEDGQPRRRVPRMTFQAKESY 714
++YWKP +T+ ++ + + ++ +P + A H+ + STGNY+P ++ NEFWL + L+ LN TV V L + +SPIS+ K+Q Q+E + G +GE D + E NP +LVITM+VSLLHS+F+FLAFKNDI FW +K +S+EG+S + ++VN Q ++FLYL DNDT++MIL ++ +G IE WK+G+ M+ +D G R+PR+ F+ +ESY
Sbjct: 210 VSYWKPNVTVNLVEDFSRYNQHAVPPNIAPHLNVEPSTGNYYPTVFFNEFWLLRDKLIQLNDTVTEVPLNIEVSPISMTKWQLFLQIEQSFQIHRSYGSMLEGETDEMKRAFLEGNPYLLVITMVVSLLHSLFDFLAFKNDIQFW-NKNKSMEGLSAKSVVVNFSSQLIVFLYLLDNDTSWMILASSGVGCCIE-------FWKIGKAMIIEIDRSG-------RIPRLRFKDRESY 431
BLAST of mRNA_Ecto-sp13_S_contig10580.540.1 vs. uniprot
Match: M1C5J3_SOLTU (Cleft lip and palate transmembrane protein n=16 Tax=Solanoideae TaxID=424551 RepID=M1C5J3_SOLTU) HSP 1 Score: 199 bits (505), Expect = 1.550e-56 Identity = 100/237 (42.19%), Postives = 149/237 (62.87%), Query Frame = 1
Query: 4 INYWKPTLTLGQLDFTAIFQRNHIPSSFAGHITFQSSTGNYHPVLYVNEFWLQQKHLVALNSTVESVDLELSISPISLWKFQTMSQLESQWTAQAKIGMAGDGEQDTFRELLAETNPIVLVITMIVSLLHSVFNFLAFKNDISFWKDKKRSLEGISVRGMLVNLFFQAVIFLYLADNDTTYMILVTNAIGLAIEASSLLFAVWKVGRFMVGRLDWGGEDGQPRRRVPRMTFQAKESY 714
I+YWKP +T+ +D + N IP A +I +S+TGNY+P ++ NEFWL + L+A+N TV V L L +SPIS+ K+Q Q++ + G DGE D + + E NP +L +TMIVS++HS+F+FLAFKNDI FW +K +S+EG+S + ++VN F Q ++FLYL DNDT++MIL ++ +G IE WK+G+ M +D G R+P + F+ +ESY
Sbjct: 217 ISYWKPNVTINLVDDFTRYTANAIPPIVAPYINIESTTGNYYPTVFFNEFWLLRDKLIAINDTVTEVPLHLEVSPISMTKWQLFLQMDQSFQVHRSYGSMLDGESDELKRVFLEGNPYLLGVTMIVSVMHSLFDFLAFKNDIQFW-NKNKSMEGLSAKSVIVNFFCQFIVFLYLLDNDTSWMILASSGVGCCIE-------FWKIGKAMHIEIDRSG-------RIPMLRFRDRESY 438
BLAST of mRNA_Ecto-sp13_S_contig10580.540.1 vs. uniprot
Match: A0A6P5GSI8_ANACO (cleft lip and palate transmembrane protein 1 homolog n=3 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5GSI8_ANACO) HSP 1 Score: 198 bits (504), Expect = 2.350e-56 Identity = 99/239 (41.42%), Postives = 149/239 (62.34%), Query Frame = 1
Query: 4 INYWKPTLTLGQLDFTAIFQRNHIPSSFAGHITFQSSTGNYHPVLYVNEFWLQQKHLVALNSTVESVDLELSISPISLWKFQTMSQLESQWTAQAKIGMAGDGEQDTFRELLAETNPIVLVITMIVSLLHSVFNFLAFKNDISFWKDKKRSLEGISVRGMLVNLFFQAVIFLYLADNDTTYMILVTNAIGLAIEASSLLFAVWKVGRFMVGRLDWGGEDGQPRRRVPRMTFQAKESYRK 720
++YWKP +T+ +D + N+IP + AGH+ TGNY+P +Y NEFWL + L+ LN TV+ + L L +SPIS+ K+Q Q+E + G +GE D + + E NP +LV+TM+VSLLHSVF+FLAFKNDI FW +K +S+EG+S + ++V+ Q V+FLYL DN+T++MIL ++ +G IE WK+G+ M +D G+ +P + F+ +SY K
Sbjct: 208 VSYWKPNITINLVDDFTRYPHNNIPQTVAGHLNVDPITGNYYPTVYFNEFWLLRDKLIPLNETVKELPLNLELSPISMTKWQLFLQIEQSFQVHRSYGSMLEGETDELKRVFLEGNPYLLVVTMVVSLLHSVFDFLAFKNDIQFW-NKNKSMEGLSAKSVVVSFICQLVVFLYLLDNETSWMILASSGVGCCIE-------FWKIGKAMHIEIDRSGK-------IPMLRFRDHDSYAK 431
BLAST of mRNA_Ecto-sp13_S_contig10580.540.1 vs. uniprot
Match: A0A1Q3AMV3_CEPFO (CLPTM1 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3AMV3_CEPFO) HSP 1 Score: 199 bits (505), Expect = 2.690e-56 Identity = 97/237 (40.93%), Postives = 149/237 (62.87%), Query Frame = 1
Query: 4 INYWKPTLTLGQLDFTAIFQRNHIPSSFAGHITFQSSTGNYHPVLYVNEFWLQQKHLVALNSTVESVDLELSISPISLWKFQTMSQLESQWTAQAKIGMAGDGEQDTFRELLAETNPIVLVITMIVSLLHSVFNFLAFKNDISFWKDKKRSLEGISVRGMLVNLFFQAVIFLYLADNDTTYMILVTNAIGLAIEASSLLFAVWKVGRFMVGRLDWGGEDGQPRRRVPRMTFQAKESY 714
++YWKP +T+ +D +Q N +P + A ++ + STGNY+P ++ NEFWL + +ALN TV + L L + PIS+ K+Q Q++ + G DGE D + + E NPI+LV+TM+VSLLHSVF+FLAFKNDI FW +K +S+EG+S + ++V+ Q ++FLYL DNDT++MIL ++ +G IE WK+G+ M +D G+ +P + F+ +ESY
Sbjct: 252 VSYWKPNITINLVDDFTRYQHNAVPPNIAAYLNVEPSTGNYYPTIFFNEFWLLRDKFIALNETVTKLPLNLEVGPISMTKWQLFLQIDQSFHIHRSYGSMIDGEGDELKRVFLEGNPILLVVTMVVSLLHSVFDFLAFKNDIQFW-NKNKSMEGLSAKSVVVSFISQLIVFLYLLDNDTSWMILASSGVGCCIE-------FWKIGKAMHIEIDRSGK-------IPMLRFRDRESY 473
BLAST of mRNA_Ecto-sp13_S_contig10580.540.1 vs. uniprot
Match: M4CZP9_BRARP (Uncharacterized protein n=4 Tax=Brassica TaxID=3705 RepID=M4CZP9_BRARP) HSP 1 Score: 198 bits (503), Expect = 2.870e-56 Identity = 100/237 (42.19%), Postives = 148/237 (62.45%), Query Frame = 1
Query: 4 INYWKPTLTLGQLDFTAIFQRNHIPSSFAGHITFQSSTGNYHPVLYVNEFWLQQKHLVALNSTVESVDLELSISPISLWKFQTMSQLESQWTAQAKIGMAGDGEQDTFRELLAETNPIVLVITMIVSLLHSVFNFLAFKNDISFWKDKKRSLEGISVRGMLVNLFFQAVIFLYLADNDTTYMILVTNAIGLAIEASSLLFAVWKVGRFMVGRLDWGGEDGQPRRRVPRMTFQAKESY 714
++ WKP +T+ +D + ++ +P + A H+ + STGNY+P +Y NEFWL + ++ +N TV V LEL ISPIS+ K+Q Q++ + Q G DGE D + + E NP +L ITM VS+LHSVF+FLAFKNDI FW +K +S+EG+S + +++N Q VIFLYL DNDT++MIL ++ +G+ IE WK+G+ M +D G +PR+ F +ESY
Sbjct: 215 VSLWKPNVTINLVDDFTHYSQSGVPPNIAPHLLVEPSTGNYYPTIYFNEFWLLRDKMIPMNETVSEVPLELEISPISMMKWQLFQQVDQSFQMQRSYGSMLDGESDELKRVFLEGNPYLLGITMFVSMLHSVFDFLAFKNDIQFW-NKNKSMEGLSAKSVVLNFICQFVIFLYLLDNDTSWMILASSGVGVCIE-------FWKIGKAMRIEVDRSGM-------IPRLRFHDRESY 436
BLAST of mRNA_Ecto-sp13_S_contig10580.540.1 vs. uniprot
Match: A0A6I9QNY6_ELAGV (cleft lip and palate transmembrane protein 1 homolog n=5 Tax=Arecaceae TaxID=4710 RepID=A0A6I9QNY6_ELAGV) HSP 1 Score: 198 bits (503), Expect = 3.130e-56 Identity = 99/239 (41.42%), Postives = 149/239 (62.34%), Query Frame = 1
Query: 4 INYWKPTLTLGQLDFTAIFQRNHIPSSFAGHITFQSSTGNYHPVLYVNEFWLQQKHLVALNSTVESVDLELSISPISLWKFQTMSQLESQWTAQAKIGMAGDGEQDTFRELLAETNPIVLVITMIVSLLHSVFNFLAFKNDISFWKDKKRSLEGISVRGMLVNLFFQAVIFLYLADNDTTYMILVTNAIGLAIEASSLLFAVWKVGRFMVGRLDWGGEDGQPRRRVPRMTFQAKESYRK 720
++YWKP +T+ +D + +N+IP + AG++ +TGNY+P + NEFWL + L+ LN TV+ + L L + PIS K+Q Q+E + G +GE D + + E NP +LV+TM VS+LHSVF+FLAFKNDI FW +K +S+EG+S + ++VN Q ++FLYL DNDT++MIL ++ IG+ IE WK+G+ M +D G R+P + F+ +ESY K
Sbjct: 210 VSYWKPNITINLVDDFTRYPQNNIPQNIAGYLNVDPATGNYYPTTFFNEFWLLRDKLIPLNDTVKELPLNLELGPISTTKWQLFLQIEQSFQVHRSYGSMLEGEADELKRVFLEGNPYLLVVTMAVSVLHSVFDFLAFKNDIQFW-NKNKSMEGLSAKSVVVNFICQLIVFLYLLDNDTSWMILASSGIGVCIE-------FWKIGKAMHIEIDRSG-------RIPMLKFRDRESYAK 433 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10580.540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10580.540.1 >prot_Ecto-sp13_S_contig10580.540.1 ID=prot_Ecto-sp13_S_contig10580.540.1|Name=mRNA_Ecto-sp13_S_contig10580.540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=240bp MINYWKPTLTLGQLDFTAIFQRNHIPSSFAGHITFQSSTGNYHPVLYVNEback to top mRNA from alignment at Ecto-sp13_S_contig10580:447..5043- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10580.540.1 ID=mRNA_Ecto-sp13_S_contig10580.540.1|Name=mRNA_Ecto-sp13_S_contig10580.540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4597bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10580:447..5043- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10580:447..5043- >mRNA_Ecto-sp13_S_contig10580.540.1 ID=mRNA_Ecto-sp13_S_contig10580.540.1|Name=mRNA_Ecto-sp13_S_contig10580.540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=720bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10580:447..5043- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |