mRNA_Ecto-sp13_S_contig10579.537.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10579.537.1
Unique NamemRNA_Ecto-sp13_S_contig10579.537.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10579.537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10579contigEcto-sp13_S_contig10579:3303..3824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size522
Hectar predicted targeting categoryother localisation
Exons1
Cds size336
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462539.1901202-UTR-Ecto-sp13_S_contig10579:3302..34881681462539.1901202-UTR-Ecto-sp13_S_contig10579:3302..3488Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10579 3303..3488 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462539.2037115-CDS-Ecto-sp13_S_contig10579:3488..38241681462539.2037115-CDS-Ecto-sp13_S_contig10579:3488..3824Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10579 3489..3824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10579.537.1prot_Ecto-sp13_S_contig10579.537.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10579 3489..3824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10579.537.1

>prot_Ecto-sp13_S_contig10579.537.1 ID=prot_Ecto-sp13_S_contig10579.537.1|Name=mRNA_Ecto-sp13_S_contig10579.537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
MYTPPPWQTLFEVLRIPLVPSGLSLVLPTNYSRSFGVHPRNAIAGPNNGT
RGSSVLRSWKQRTRVKPMTCSREYSNKCPLGRYRICGHCHSHGGRCIRTC
YTRPPRKHVVT*
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mRNA from alignment at Ecto-sp13_S_contig10579:3303..3824+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10579.537.1 ID=mRNA_Ecto-sp13_S_contig10579.537.1|Name=mRNA_Ecto-sp13_S_contig10579.537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=522bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10579:3303..3824+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCAACACTCGAGCGAAACATATAGACACAAGAGAGACAGGCAACCAGA
GACAGACAGACAGACAGACAGAGAGCAAGAGCGAGAGGCAAGAGCAAGAG
AGAGCACCTGCACAAGGGAACACCCGAGCACAGCTCGAGATGGTGCGTAA
CGCGTCCCTTTTTCTGCATGATGCAGGCACCCGTGGATGTACACACCACC
CCCGTGGCAGACGCTTTTTGAGGTTCTCCGCATTCCGTTAGTCCCGTCTG
GTCTATCGTTAGTTTTGCCCACTAACTACTCTCGGTCGTTTGGAGTGCAC
CCCCGTAACGCCATCGCCGGCCCTAATAACGGAACACGTGGTTCGTCGGT
GCTGCGATCATGGAAACAACGTACTCGGGTAAAACCCATGACGTGCTCAA
GGGAGTACTCGAACAAGTGTCCGTTGGGTCGTTACAGGATTTGCGGGCAT
TGCCATTCACACGGCGGCCGCTGCATTCGAACCTGTTACACACGGCCACC
GCGAAAACATGTCGTCACTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10579:3303..3824+

>mRNA_Ecto-sp13_S_contig10579.537.1 ID=mRNA_Ecto-sp13_S_contig10579.537.1|Name=mRNA_Ecto-sp13_S_contig10579.537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10579:3303..3824+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACACACCACCCCCGTGGCAGACGCTTTTTGAGGTTCTCCGCATTCC
GTTAGTCCCGTCTGGTCTATCGTTAGTTTTGCCCACTAACTACTCTCGGT
CGTTTGGAGTGCACCCCCGTAACGCCATCGCCGGCCCTAATAACGGAACA
CGTGGTTCGTCGGTGCTGCGATCATGGAAACAACGTACTCGGGTAAAACC
CATGACGTGCTCAAGGGAGTACTCGAACAAGTGTCCGTTGGGTCGTTACA
GGATTTGCGGGCATTGCCATTCACACGGCGGCCGCTGCATTCGAACCTGT
TACACACGGCCACCGCGAAAACATGTCGTCACTTAA
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