mRNA_Ecto-sp13_S_contig10573.533.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10573.533.1
Unique NamemRNA_Ecto-sp13_S_contig10573.533.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10573.533.1 vs. uniprot
Match: D8LB24_ECTSI (OTU domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB24_ECTSI)

HSP 1 Score: 727 bits (1877), Expect = 3.240e-264
Identity = 372/387 (96.12%), Postives = 375/387 (96.90%), Query Frame = 1
Query:    1 MKITAALVSALLLPASSFAGLSSIWRHSAKIKRDGFLTDSFAVQGISTNMAVRQVPGDGNCLFHAISACLDHACNGTHPSLDLSELMPKSAALRKVAVDYLVDNLKKTLYLEKEESVPVYELLSVVAAQYNMTAEHYCEVMRQSSVWGGGPEIVALSNALCRPIHVYELASNGVSFCFRRMACFGSPSFDDKQAIHILSADSRFPNLKPGRQLANGNHFLALFPCPETVASPDAAGVGVGXXXXSSLRGSAAEASAIGVGGKKTGKFRRFLSSLLTCSCLSSRRAARDDDEPAAGEFTTITDPTSAHKGAAHPQGAMETGGGGVGGSSGWQQGTPVPDVGVGLGSETVSGARGGGGTHARRGRPQQQSGLAAHNANKGRGVGWTRTR 1161
            MKITAALVSALLLPAS FAGLSSIWRHSAKIKRDGFLTDSFAVQGISTNMAVRQVPGDGNCLFHAISACLDHACNGTHPSLDLSELMPKSAALRKVAVDYLVDNLKKTLYLEKEESVPVYELLSVVAAQYNMTAEHYCEVMRQSSVWGGGPEIVALSNALCRPIHVYELASNGVSFCFRRMACFGSPSFDDKQAIHILSADSRFPNLKPGRQLANGNHFLALFPCPETVASPDAAGVGVG    SSLRGSAAEASAIGVGGKK GKFRRFLSSLLTCSCLSSRRA R+DDEPAAG+ TTITDPTSAHKGAAHPQGAMETGGGGVGG+SGWQQGTP PDV VGLGSETVSGARGGGGTHARRG PQQQSGLAAHNA KGRGVGWTRTR
Sbjct:    1 MKITAALVSALLLPASCFAGLSSIWRHSAKIKRDGFLTDSFAVQGISTNMAVRQVPGDGNCLFHAISACLDHACNGTHPSLDLSELMPKSAALRKVAVDYLVDNLKKTLYLEKEESVPVYELLSVVAAQYNMTAEHYCEVMRQSSVWGGGPEIVALSNALCRPIHVYELASNGVSFCFRRMACFGSPSFDDKQAIHILSADSRFPNLKPGRQLANGNHFLALFPCPETVASPDAAGVGVGGGGASSLRGSAAEASAIGVGGKKPGKFRRFLSSLLTCSCLSSRRAVREDDEPAAGDVTTITDPTSAHKGAAHPQGAMETGGGGVGGASGWQQGTPAPDVVVGLGSETVSGARGGGGTHARRGWPQQQSGLAAHNAKKGRGVGWTRTR 387          
BLAST of mRNA_Ecto-sp13_S_contig10573.533.1 vs. uniprot
Match: A0A835YZQ7_9STRA (OTU domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZQ7_9STRA)

HSP 1 Score: 306 bits (784), Expect = 1.680e-98
Identity = 150/223 (67.26%), Postives = 181/223 (81.17%), Query Frame = 1
Query:   46 SSFAGLSSIWRHSAKIKRDGFLTDSFAVQGISTNMAVRQVPGDGNCLFHAISACLDHACNGTHPSLDLSELMPKSAALRKVAVDYLVDNLKKTLYLEKEESVPVYELLSVVAAQYNMTAEHYCEVMRQSSVWGGGPEIVALSNALCRPIHVYELASN-GVSFCFRRMACFGSPSFDDK-QAIHILSADSRFPNLKPGRQLANGNHFLALFPCPETVASPDAAG 708
            +S AGL+++WRHSA+I+RDGFLT++F V+G+   M VRQVPGDGNCLFH+ISACL+HA   +HPSL L++L+PKSA LRK+AVDYLV +  + LYLE  E+VPV ELL+VVA QYNMT + YC+ MR  +VWGGGPEIVALSN L RPIHVYELA+  G  FCFRRMACFGSP FD + + IHILSAD+RFPNL PG+QLANGNHFL LFPC  + A  +A G
Sbjct:   18 TSHAGLNAMWRHSAQIQRDGFLTEAFPVEGLPVQMQVRQVPGDGNCLFHSISACLEHADTSSHPSLHLNDLLPKSAVLRKMAVDYLVADPDRVLYLEGGETVPVNELLTVVATQYNMTVDAYCKHMRLPAVWGGGPEIVALSNCLRRPIHVYELAAGAGRRFCFRRMACFGSPLFDGECEPIHILSADARFPNLAPGQQLANGNHFLCLFPCAPSDALSEACG 240          
BLAST of mRNA_Ecto-sp13_S_contig10573.533.1 vs. uniprot
Match: A0A7S3L1U5_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L1U5_9STRA)

HSP 1 Score: 219 bits (558), Expect = 1.250e-65
Identity = 118/224 (52.68%), Postives = 142/224 (63.39%), Query Frame = 1
Query:   73 WRHSAKIKRDGFLTDSF--------------AVQGISTNMAVRQVPGDGNCLFHAISACLDHACNGTHPSLD--LSELMPKSAALRKVAVDYLVDNLKKTLYLEKEESVPVYELLSVVAAQYNMTAEHYCEVMRQSSVWGGGPEIVALSNALCRPIHVYELA--------SNGVSFCFRRMACFGSPSFDDKQAIHILSADSRFPNLKPGRQLANGNHFLALFP 672
            W  S  I+ DGFL D F                Q + T   +RQVPGDGNCLFH+IS CL HA NGTH  +   L +L   S  LR+ AVD L    K+ L+L+  E++   EL+   A QY +T+E YC+ M Q  VWGGGPEIVALSN L RPIHVYELA        S+G +F  RRMACFGSP FD ++A+HILSADSRFP+L PG QL+ GNHFLA+FP
Sbjct:   18 WNTSPHIRYDGFLRDEFRRIPGEWEEEVRLRTRQRLETKCRIRQVPGDGNCLFHSISLCLQHATNGTHWDVSKCLEDLYTHSQTLRQQAVDCLRQPHKR-LFLQGRETLKSGELVQAAAQQYGLTSEEYCQAMEQDCVWGGGPEIVALSNLLQRPIHVYELATSSSSSKPSSGNTFVLRRMACFGSPRFDRREALHILSADSRFPDLLPGEQLSAGNHFLAVFP 240          
BLAST of mRNA_Ecto-sp13_S_contig10573.533.1 vs. uniprot
Match: B7G567_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G567_PHATC)

HSP 1 Score: 209 bits (531), Expect = 7.780e-61
Identity = 107/189 (56.61%), Postives = 131/189 (69.31%), Query Frame = 1
Query:  154 VRQVPGDGNCLFHAISACLDHACNGTHPSLDLSE------LMPKSAALRKVAVDYLVDNLKKTLYLEKEESVPVYELLSVVAAQYNMTAEHYCEVMRQSSVWGGGPEIVALSNALCRPIHVYELASNGV----------SFCFRRMACFGSPSFDDKQAIHILSADSRFPNLKPGRQLANGNHFLALFP 672
            +RQVPGDGNCLFH+IS CL +A NGTH  L+ S+      L   S  LR+ AV+ L  + ++ L+L+  ES+  +EL+   A QYN++ E YC  M+Q SVWGGGPEIVAL N L RPIHVYELAS             SF  RRMACFGSP FD +Q +HILSADSRFP++ PG+QLA+GNHFLALFP
Sbjct:   93 IRQVPGDGNCLFHSISLCLQYAANGTHWDLNTSDRRGLDALYEHSQTLRRKAVEVL-QHSQRRLFLQGRESLRAHELVQAAAQQYNLSPEEYCASMQQDSVWGGGPEIVALCNVLQRPIHVYELASTTTRSSRNDDERQSFVLRRMACFGSPKFDRRQPLHILSADSRFPDVTPGQQLASGNHFLALFP 280          
BLAST of mRNA_Ecto-sp13_S_contig10573.533.1 vs. uniprot
Match: A0A1Z5JTL4_FISSO (OTU domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JTL4_FISSO)

HSP 1 Score: 203 bits (516), Expect = 7.550e-59
Identity = 113/228 (49.56%), Postives = 139/228 (60.96%), Query Frame = 1
Query:   73 WRHSAKIKRDGFLTDSF--------------AVQGISTNMAVRQVPGDGNCLFHAISACLDHACNGTHPSLD--LSELMPKSAALRKVAVDYLVDNLKKTLYLEKEESVPVYELLSVVAAQYNMTAEHYCEVMRQSSVWGGGPEIVALSNALCRPIHVYELA--SNGV----------SFCFRRMACFGSPSFDDKQAIHILSADSRFPNLKPGRQLANGNHFLALFP 672
            W  SA I   GFL   F               V   +    +RQVPGDGNCLFH++S CL HA NGTH  +   L EL   S +LR  AV  L  N K+ L+L+ +ES+   EL++  A QY++T E YC  M +  VWGGGPEIVALSN L RPIHVYELA  S G           +F  +RMACFGSP FD K+A+HILSADSRFP+++PG Q+  GNHFL++FP
Sbjct:   49 WNPSALIDEKGFLKGLFRRKKGDWEEEFPMRTVYHTNHPCQIRQVPGDGNCLFHSLSLCLQHAVNGTHWDMPNRLDELYEHSRSLRAKAVACLRQN-KRKLFLQGKESMRAIELVTSAAQQYDLTPEEYCATMEEDCVWGGGPEIVALSNILQRPIHVYELAMESPGAEDATDQPKKPTFILKRMACFGSPRFDGKRALHILSADSRFPDIQPGEQMVAGNHFLSVFP 275          
BLAST of mRNA_Ecto-sp13_S_contig10573.533.1 vs. uniprot
Match: A0A7S1V4T9_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V4T9_9STRA)

HSP 1 Score: 198 bits (504), Expect = 4.500e-58
Identity = 100/177 (56.50%), Postives = 125/177 (70.62%), Query Frame = 1
Query:  154 VRQVPGDGNCLFHAISACLDHACNGTH-PSLDLSELMPKSAALRKVAVDYLVDNLKKTLYLEKEESVPVYELLSVVAAQYNMTAEHYCEVMRQSSVWGGGPEIVALSNALCRPIHVYELAS---NGVSFCFRRMACFGSPSFDDKQAIHILSADSRFPNLKPGRQLANGNHFLALFP 672
            VRQVPGDGNCLFHA+S CL  + +G H P  DL +L   S +LR+ AVDY+    ++ L+L+  E +   +L+   AAQY +T + Y E MRQ S WGGGPEIVALSN L RPIHVYEL +   N   F  RRM CFGSP FD ++A+HILSADSRFP+++PG+Q   GNHFLA+FP
Sbjct:    1 VRQVPGDGNCLFHALSVCLYKSEHGCHFPFGDLGKLQQCSKSLRQRAVDYVKKKPRRLLFLQAREFLRAKDLIDSSAAQYGVTGDEYLETMRQDSTWGGGPEIVALSNMLRRPIHVYELYAPNRNVQDFRLRRMCCFGSPKFDRQEALHILSADSRFPDVQPGKQKKEGNHFLAIFP 177          
BLAST of mRNA_Ecto-sp13_S_contig10573.533.1 vs. uniprot
Match: A0A6U9WPR4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6U9WPR4_9STRA)

HSP 1 Score: 191 bits (486), Expect = 6.100e-54
Identity = 116/264 (43.94%), Postives = 141/264 (53.41%), Query Frame = 1
Query:   49 SFAGLSSIWRHSAKIKRDGFLTDSF-AVQG-------------ISTNMA---VRQVPGDGNCLFHAISACLDHACNGTHPSLDLSELMP----KSAALRKVAVDYLVDNLKKTLYLEKEESVPVYELLSVVAAQYNMTAEHYCEVMRQSSVWGGGPEIVALSNALCRPIHVYELA---------------------------------SNGVSFCFRRMACFGSPSFDDKQAIHILSADSRFPNLKPGRQLANGNHFLALFPCP 678
            S  G    W  S  I  +GFL   +  V G             IS + +   +RQVPGDGNCLFH+IS    HA NGTH  +   + M      SA LR++AVD L +  +K L+L+  E +   +L+   AAQY +T   YC++MRQ S WGGGPEIVAL N L RPIHVYEL                                  S   SF  RRMACFGSP FD   A+HILSADSRFP+L+PG QL +GNHFLA+FP P
Sbjct:   49 SMCGHYPPWNPSPNIDENGFLVPKYNRVSGEWEKEVKLRKKDRISLHNSPAMIRQVPGDGNCLFHSISVAWAHATNGTHLEMKSPDTMEWLYRTSANLRQLAVDCLEER-RKLLFLQGHEHLKATDLVEAAAAQYGITGSEYCDLMRQESYWGGGPEIVALCNVLQRPIHVYELHVPEDDNDDDKQRHSRKGKMRSYYRKGYSLSSADSPHSSFVLRRMACFGSPKFDRSPALHILSADSRFPDLRPGEQLESGNHFLAIFPEP 311          
BLAST of mRNA_Ecto-sp13_S_contig10573.533.1 vs. uniprot
Match: A0A7S2PB71_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PB71_9STRA)

HSP 1 Score: 192 bits (488), Expect = 7.680e-54
Identity = 101/188 (53.72%), Postives = 124/188 (65.96%), Query Frame = 1
Query:  154 VRQVPGDGNCLFHAISACLDHACNGTHPSLDLSE----LMPKSAALRKVAVDYLVDNLKK---TLYLEKEESVPVYELLSVVAAQYNMTAEHYCEVMRQSSVWGGGPEIVALSNALCRPIHVYELA--------SNGVSFCFRRMACFGSPSFDDKQAIHILSADSRFPNLKPGRQLANGNHFLALFP 672
            VRQVPGDGNCLFH++S CL +A   +H  L + E    L  +S  LR  AV  L  + +K    L+++ +E +   ELLS  A+QYN++ E YCE M Q   WGGGPEIVAL NAL RPIHVYEL+        SN   F   RMACFGSP FD ++ +HILSADSRFP++ PGRQ  +GNHFLALFP
Sbjct:  141 VRQVPGDGNCLFHSLSLCLHYAERQSHFPLKVPESFRELFRRSKKLRNTAVQILQQSTEKGDKLLFMQGQEFLTCSELLSAAASQYNISPEEYCEAMLQDCTWGGGPEIVALVNALRRPIHVYELSVHEELPNGSNSKEFHLSRMACFGSPKFDKREPLHILSADSRFPDITPGRQKKSGNHFLALFP 328          
BLAST of mRNA_Ecto-sp13_S_contig10573.533.1 vs. uniprot
Match: B8C8S4_THAPS (OTU domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C8S4_THAPS)

HSP 1 Score: 188 bits (477), Expect = 1.770e-51
Identity = 102/235 (43.40%), Postives = 135/235 (57.45%), Query Frame = 1
Query:   73 WRHSAKIK-RDGFLTDSFAVQGISTNMAVRQVPGDGNCLFHAISACLDHACNGTHPSLD----LSELMPKSAALRKVAVDYLVDNLKKTLYLEKEESVPVYELLSVVAAQYNMTAEHYCEVMRQSSVWGGGPEIVALSNALCRPIHVYELASN------------------------GVSFCFRRMACFGSPSFDDKQAIHILSADSRFPNLKPGRQLANGNHFLALFPCPETVA 690
            W   A I+ + G  + ++    +   + +RQVPGDGNCLFH+I+ CL    NGTH S+D    + +L  +S  LR  AVD L +  +K L+L+ EE +   ELL   AAQ+ +  E YCE+MR+ S WGGGPEIVAL N L RPIH+YEL                              F  RRMACFGSP +D ++ +HILSADSRFP+++P +    GNHFLALFP   + A
Sbjct:  120 WEPLANIRGKHGPRSRTYPKSLVDIPVEIRQVPGDGNCLFHSIAVCLYKVVNGTHISMDSPRSIHQLRCQSLHLRNCAVDVLQNVPRKRLFLQGEEYLEANELLGAAAAQFELDGEEYCELMRKESYWGGGPEIVALCNYLQRPIHIYELIPTQQKTTDXXXXXXXXXSQPEHAQPTSTQFTLRRMACFGSPKYDRREPLHILSADSRFPDIEPRKIRKVGNHFLALFPVTTSAA 354          
BLAST of mRNA_Ecto-sp13_S_contig10573.533.1 vs. uniprot
Match: K0SP19_THAOC (OTU domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SP19_THAOC)

HSP 1 Score: 180 bits (457), Expect = 3.790e-49
Identity = 111/261 (42.53%), Postives = 145/261 (55.56%), Query Frame = 1
Query:   73 WRHSAKIKRDGFLTDSFA-VQGISTNMA-----------------------VRQVPGDGNCLFHAISACLDHACNGTHPSLDLSE----LMPKSAALRKVAVDYL-----------VDNL----KKTLYLEKEESVPVYELLSVVAAQYNMTAEHYCEVMRQSSVWGGGPEIVALSNALCRPIHVYEL------ASNGVS------------FCFRRMACFGSPSFDDKQAIHILSADSRFPNLKPGRQLANGNHFLALFP 672
            W  S++I   GFLT+S+  V G   ++A                       +RQVPGDGNCLFH+I+ CL  A NGT   +D  E    L  +S ALR  AVD L           +D++    ++ L+L+ +E +  +ELL+  AAQ+++  E YC +MR+ S WGGGPEIVAL N L RPIH+YEL      AS+  S            F  RRMACFGSP FD K+ +HILSADSRFP+++  R    GNHFLAL P
Sbjct:   88 WNPSSRIDTQGFLTESYLRVNGEWESLANIRGKHGPRNRRNFERMKEQPVRIRQVPGDGNCLFHSIAVCLYRAVNGTDIPMDSHECIGRLRDQSLALRNAAVDVLQQQPTKPGVQFIDSIGPKTRRVLFLQGDEYLEAHELLNAAAAQFDLDGEEYCNLMRKESYWGGGPEIVALCNYLQRPIHIYELIPSDEKASSRASQEKYKKLKVSNQFSLRRMACFGSPKFDRKEPLHILSADSRFPDVEARRM---GNHFLALHP 345          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10573.533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB24_ECTSI3.240e-26496.12OTU domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YZQ7_9STRA1.680e-9867.26OTU domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3L1U5_9STRA1.250e-6552.68Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
B7G567_PHATC7.780e-6156.61Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5JTL4_FISSO7.550e-5949.56OTU domain-containing protein n=1 Tax=Fistulifera ... [more]
A0A7S1V4T9_9STRA4.500e-5856.50Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A6U9WPR4_9STRA6.100e-5443.94Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S2PB71_9STRA7.680e-5453.72Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
B8C8S4_THAPS1.770e-5143.40OTU domain-containing protein n=1 Tax=Thalassiosir... [more]
K0SP19_THAOC3.790e-4942.53OTU domain-containing protein n=1 Tax=Thalassiosir... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10573contigEcto-sp13_S_contig10573:780..5305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score729.9
Seed ortholog evalue6e-208
Seed eggNOG ortholog2880.D8LB24
Model size1164
Hectar predicted targeting categorysignal peptide
Exons7
EggNOG free text desc.OTU-like cysteine protease
EggNOG OGs2BVCW@1,2S253@2759
Ec32 ortholog descriptionOvarian tumour, otubain
Ec32 orthologEc-27_005500.1
Cds size1164
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10573.533.1prot_Ecto-sp13_S_contig10573.533.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10573 780..5305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462539.0160787-CDS-Ecto-sp13_S_contig10573:779..8221681462539.0160787-CDS-Ecto-sp13_S_contig10573:779..822Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10573 780..822 +
1681462539.026369-CDS-Ecto-sp13_S_contig10573:2014..21331681462539.026369-CDS-Ecto-sp13_S_contig10573:2014..2133Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10573 2015..2133 +
1681462539.036163-CDS-Ecto-sp13_S_contig10573:2553..26761681462539.036163-CDS-Ecto-sp13_S_contig10573:2553..2676Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10573 2554..2676 +
1681462539.0465643-CDS-Ecto-sp13_S_contig10573:2818..29501681462539.0465643-CDS-Ecto-sp13_S_contig10573:2818..2950Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10573 2819..2950 +
1681462539.0583916-CDS-Ecto-sp13_S_contig10573:3352..34591681462539.0583916-CDS-Ecto-sp13_S_contig10573:3352..3459Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10573 3353..3459 +
1681462539.0687509-CDS-Ecto-sp13_S_contig10573:4129..42131681462539.0687509-CDS-Ecto-sp13_S_contig10573:4129..4213Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10573 4130..4213 +
1681462539.0773835-CDS-Ecto-sp13_S_contig10573:4749..53051681462539.0773835-CDS-Ecto-sp13_S_contig10573:4749..5305Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10573 4750..5305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10573.533.1

>prot_Ecto-sp13_S_contig10573.533.1 ID=prot_Ecto-sp13_S_contig10573.533.1|Name=mRNA_Ecto-sp13_S_contig10573.533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=388bp
MKITAALVSALLLPASSFAGLSSIWRHSAKIKRDGFLTDSFAVQGISTNM
AVRQVPGDGNCLFHAISACLDHACNGTHPSLDLSELMPKSAALRKVAVDY
LVDNLKKTLYLEKEESVPVYELLSVVAAQYNMTAEHYCEVMRQSSVWGGG
PEIVALSNALCRPIHVYELASNGVSFCFRRMACFGSPSFDDKQAIHILSA
DSRFPNLKPGRQLANGNHFLALFPCPETVASPDAAGVGVGGGGGSSLRGS
AAEASAIGVGGKKTGKFRRFLSSLLTCSCLSSRRAARDDDEPAAGEFTTI
TDPTSAHKGAAHPQGAMETGGGGVGGSSGWQQGTPVPDVGVGLGSETVSG
ARGGGGTHARRGRPQQQSGLAAHNANKGRGVGWTRTR*
back to top

mRNA from alignment at Ecto-sp13_S_contig10573:780..5305+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10573.533.1 ID=mRNA_Ecto-sp13_S_contig10573.533.1|Name=mRNA_Ecto-sp13_S_contig10573.533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4526bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10573:780..5305+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGATCACCGCAGCCCTCGTGTCGGCTTTACTCTTGCCAGGTGGGTG TAACGTGCGTTTGCTGTGAAATACGGCGAGAGAGAGGAAAAGTCGTTGAC ACATTTGACATCGTGGACCTCACGCGATGCCCATGGGTGCATGCCTTCAC GGTAAGGGTTTGAGAGACCCGTTGAGAGACATGAGGTCCAGGTTTGGGTT GTGGGGCTACGACACGTGGCTGTTCGTGGCGTCATCCTCCTGCTACATTG TGCTGGTAACATGTATGTGTAGGCAGCGCAAACACGTAGGACGATGCAAC CCCTGCATGAAAGGGGGGGTATTTTTCTGCAACGAGGGCAACACGCGCCC CAACGAGCCTTCACCCGGCGGTGGGTTGTTCCTATTGCCGAAGGCGGTGT GCAAGGCCGAAGATGCGGTCTTACATGCCACGAATGATAGCATATCATGT GATTTAACGTTTGGAGGCTTGCGGTCGTTCGGTCGATTGACAAACGGCCA GGGTCGCTGTTATTCAATGTTGACATTTGTTTCCGTAAGCGTCACTGTCC TTTCTCGACGTGGAAGGCTGAGCTGAGAGCGCCCCAGGCAGTATTAGCAC AACGTTCAACATCTGCCAGCCTTCGCCTCCCACATCAAGATGTCCGATCG TGTACTCAAAGCAGCAGCAAGATTACCGTCGTTAGGTGTGCTGCATAGCA AGGTGGCAAGATCGCTGCTACCGAAGGTCCTTGGGGCGTGCTAAATATTG ATTTCCTCGAATGACTGATTCAAGCATGTACGTCGTAGTGGCCGTTTTCT TTCGTAGCTGAATCCACGCAACAGGGGAGCGTTCGCCTGGGAGGGGGGAC TACCGGTGGTTTTTCGCGGTTTTTTGTAGGCATCCATGCGGCAGTGCTTG TAGTCTCCAACAGATGGCGAGAAAGTGGGGCATCAGGGCATCCCAGAGCG ATCCCNNNNNNNNNNNNNNNNNNNNNNNNNCGCCGAACCCCCACAAAGAC TGATGCGTGCAGTCTTGCGAACCACCCTTGGCTTCGACTGACCTGATCCC CACCCTCTTTGTGGTGTTTATGGAGCTACGCGCGCAGCAGTTGTGTGCAC AACAATTTCCCAAAGTGGTCTGTTGGTCAGCTTCCAAGCCGTGCCCCCGG CCACACGCACGGCAGTCCAAGACTTGGACATCATCGGTACGCCCCCGTTA CCCCCTCACTCGTGCTTGCGTGTGCTTTGTTGCAGCGAGCTCCTTCGCTG GGCTGTCATCGATATGGCGACACTCAGCCAAGATCAAGCGTGACGGGTTC TTGACGGACAGCTTCGCCGTGCAGGGGATTTCCACCAATATGGCGGTCCG ACAGGTGGGTACTCGGGAGGGGGAGACTTCGGTGTCTGAGGAAGCGACAA TACTTTATGCCATGCAGAAGCCATCGTCTGCCGTATGATATTGTGTGTGG GGCTTCACGCCGGAATAGAGGGCGCCTAACCCACGAAATTTTCGTGCTCA GGGAGTGCCCCGGCACCGTATAGCCAGTGGCTGTATGTTGGAAAGCAGGG CCTGGGTTTTGCCCATTATGGTGACGATGCCGTAAGGTTGTGCCCCCTTA CCATGTGTCATGACTCATGACGTATATATTACACAAGAAAAAGACACGCT GGTTGAGAACAGACCGACGTCCAGGAAACGCACACCGCAGACACCAAGCA ATCCTCCGCCAAACCTTGACGTATATCACTGTTCTGTTTCTGTTGTTTGC CTTCGTTCTTTTCGTCGACGACAGGTACCCGGGGATGGTAACTGTCTCTT CCACGCGATCTCTGCGTGCCTCGACCACGCCTGCAACGGCACGCACCCCA GCTTAGACTTGAGCGAGCTGATGCCCAAGTCCGCCGCACTCAGGAAGGTG CGCCAGCGACTTGTTTTTGTTGGGTTTGTCTTGCATACCGTGACAAAGAA GTGTTGCTGGCGAAGTGTGTTGGTACTCTTTCCTCAAGGTAATGTGCATA TGACGAAACCATTCGGTTAACTTGCCAAAACGCACGCAGGTTGCGGTGGA CTACCTGGTGGACAACCTGAAGAAGACCCTCTACCTTGAGAAGGAGGAGA GCGTTCCGGTGTACGAGCTTCTCAGCGTCGTGGCCGCGCAGTACAACATG ACCGCCGAGCACTACTGCGAGGTGAGGAGCCGCGCGCCTCCCTTCTAGTG TCTGCGTAACGGCACATGGTGGTAATAGTCGCTGCCGACGTGTGTGTTAT TGTTACCTCCATGAGTCTACCCTTGTAAAGTCGCCTTCGGTAAGACGGCA GCCCCCTTGCGGTCCGGTGTTGCTCGAGGAACGGTGGAACTACTGCTGTT CGGCATAGTTTGTCGAGCAGCTGGTATTGGTCACTGTCGATTGAGTGATT GGTGTGTATTCATCACTTGCGCGTTTGATGGACTTGCCGGCACCATTGCC TGCCATAGCACGCACGCGTCCATTTTCATGTTTGGTTCAACAACGATTCC CCGGGGTGCTCATGACGCATCACGATGTGTTGTCGCGTGCGTGCTTGTGT GATATCGTTGTTGTGACCGCAAGGTGATGCGACAGTCCAGTGTTTGGGGG GGCGGGCCGGAGATCGTGGCCCTGTCCAATGCTCTCTGCCGACCCATCCA CGTGTATGAGCTTGCCTCCAATGGTGTAAGGTGGGTACCCTTTGTGTTGT TCGCTTTTTCTTTGCCACGCGGACCTCTGCTGGTGTTTCTTCGGCGTGTG GCGATTCTCGCTCACGTCGCATGTGCGCAATTTGGTGTATTTTTGCGTGT TGAAATCCACGCTAGTGTATGTGCCGATCCGCACACGGGCATTACTCGTT TTGTTGTCTGGATTCCGCATGTTGGATTGCGGCCTCACGGGGGTTGCCAT GGAGGTCGTCTATCGGCAAGAGGGGTATTTGCCTCCGTTCGTTGCTGCAC GCCGTGATCGCTCTTCGCTTCGCCCTGCCGACAGCCTTGTTTTTTGGTAC TTGTTTGGAGGTTCCTTGATGAATGCTCTCCCGTTCTTGTTCCCGCCCTT GCCGCCCGTTCCTGAATTAAGCCGTTCGGTGTGGACCCACATGGTAGCAT GATGCATGGGAACGTCGCCGTCACACAGCCACACTGAGTGGAAGTGGCCA TTTCACCTCCATTGTATCATTCAGCGGCTCTTCCTCTCTTCTCCATGCCT TTCTCCAACCCCGTATAGCCTTCCCGATGTCCCCTGATCCTATCTCGACA ATCTATCTCTTGACGGCATCCCCTCTCCGCTCCTGTTCCGGCGTCTTGGG GGCGGCCGTGTGCCGTGGCTTCTGCTCGTGGTTCCGTCTTGTCCTTGCAG CTTTTGCTTCCGAAGGATGGCTTGCTTCGGGTCCCCTTCTTTCGACGACA AGCAAGCGATACACATCCTCTCCGCCGACTCTAGGTACGAAGCGTTCGAG GCGATTCTTTAATACTTCGTTCGGGTAGTCATCGAAAGCTCCATGTCATG ATATTGGTTGCTTGCTACTACTTTATCGACAGAATATAGGCAGTACGGGA TTGGGTGCACGTCAGCGAGGGAAAGCTTGGCTGCGCAAACGTACCGAAAG CTTACGAGGTATCATCAGGCGCGTATGTGCGTGCCATCAGTGTTGAAGCG AGGCAGGCGTGGGTTTGAGTCGTATATTCATGCATGAGCACCAACAGCAA CATGTTGGACTGGTGCCACCAGGCATTCTGAAGAGGCCGCTAGGCCTCAT GTCGTTCGCACGCGATTCCTTGATGAGCAAACACAAGTTGTCATACTGAA TGGTTGGGGCCAAGGTGAGATAGTGTATGGACTTATTCTATTTTGCTGTC GTATGAGACCCAGCCCGGCGGGACCAGGTTATTGTGCACGACACTTCCAC ACATGTTTGACGCGCTGACTCACATCCTTTCCCTCCGCTCCGCCTCCTCG CAAATCATTCCGACCAACAGATTCCCAAACCTCAAGCCAGGCAGGCAGCT GGCTAACGGCAACCACTTTCTAGCCCTCTTCCCCTGTCCAGAGACCGTGG CGTCTCCGGACGCGGCGGGCGTGGGAGTGGGCGGAGGGGGGGGGTCCAGC CTGAGGGGGAGCGCCGCGGAGGCTTCTGCCATCGGGGTGGGCGGGAAAAA AACCGGAAAGTTCCGGCGTTTCTTGTCGAGCCTCTTGACCTGCTCGTGCC TATCGTCCCGGCGAGCCGCGAGGGACGACGACGAGCCCGCTGCCGGCGAG TTTACCACCATCACAGACCCGACCAGCGCCCACAAGGGGGCGGCTCATCC ACAGGGGGCCATGGAGACAGGTGGCGGCGGTGTCGGGGGGTCGAGCGGTT GGCAGCAGGGTACCCCGGTACCCGACGTCGGGGTTGGGCTAGGTTCGGAA ACCGTTTCGGGAGCTAGGGGCGGCGGAGGGACTCATGCGCGGCGAGGGCG GCCGCAGCAGCAATCGGGCCTGGCTGCGCACAATGCTAACAAGGGTCGCG GTGTTGGGTGGACAAGAACCCGATGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10573:780..5305+

>mRNA_Ecto-sp13_S_contig10573.533.1 ID=mRNA_Ecto-sp13_S_contig10573.533.1|Name=mRNA_Ecto-sp13_S_contig10573.533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1164bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10573:780..5305+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGATCACCGCAGCCCTCGTGTCGGCTTTACTCTTGCCAGCGAGCTC
CTTCGCTGGGCTGTCATCGATATGGCGACACTCAGCCAAGATCAAGCGTG
ACGGGTTCTTGACGGACAGCTTCGCCGTGCAGGGGATTTCCACCAATATG
GCGGTCCGACAGGTACCCGGGGATGGTAACTGTCTCTTCCACGCGATCTC
TGCGTGCCTCGACCACGCCTGCAACGGCACGCACCCCAGCTTAGACTTGA
GCGAGCTGATGCCCAAGTCCGCCGCACTCAGGAAGGTTGCGGTGGACTAC
CTGGTGGACAACCTGAAGAAGACCCTCTACCTTGAGAAGGAGGAGAGCGT
TCCGGTGTACGAGCTTCTCAGCGTCGTGGCCGCGCAGTACAACATGACCG
CCGAGCACTACTGCGAGGTGATGCGACAGTCCAGTGTTTGGGGGGGCGGG
CCGGAGATCGTGGCCCTGTCCAATGCTCTCTGCCGACCCATCCACGTGTA
TGAGCTTGCCTCCAATGGTGTAAGCTTTTGCTTCCGAAGGATGGCTTGCT
TCGGGTCCCCTTCTTTCGACGACAAGCAAGCGATACACATCCTCTCCGCC
GACTCTAGATTCCCAAACCTCAAGCCAGGCAGGCAGCTGGCTAACGGCAA
CCACTTTCTAGCCCTCTTCCCCTGTCCAGAGACCGTGGCGTCTCCGGACG
CGGCGGGCGTGGGAGTGGGCGGAGGGGGGGGGTCCAGCCTGAGGGGGAGC
GCCGCGGAGGCTTCTGCCATCGGGGTGGGCGGGAAAAAAACCGGAAAGTT
CCGGCGTTTCTTGTCGAGCCTCTTGACCTGCTCGTGCCTATCGTCCCGGC
GAGCCGCGAGGGACGACGACGAGCCCGCTGCCGGCGAGTTTACCACCATC
ACAGACCCGACCAGCGCCCACAAGGGGGCGGCTCATCCACAGGGGGCCAT
GGAGACAGGTGGCGGCGGTGTCGGGGGGTCGAGCGGTTGGCAGCAGGGTA
CCCCGGTACCCGACGTCGGGGTTGGGCTAGGTTCGGAAACCGTTTCGGGA
GCTAGGGGCGGCGGAGGGACTCATGCGCGGCGAGGGCGGCCGCAGCAGCA
ATCGGGCCTGGCTGCGCACAATGCTAACAAGGGTCGCGGTGTTGGGTGGA
CAAGAACCCGATGA
back to top