mRNA_Ecto-sp13_S_contig1057.531.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1057.531.1
Unique NamemRNA_Ecto-sp13_S_contig1057.531.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1057.531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1057contigEcto-sp13_S_contig1057:2893..3712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size481
Hectar predicted targeting categoryother localisation
Exons2
Cds size480
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462538.9288402-CDS-Ecto-sp13_S_contig1057:2892..31391681462538.9288402-CDS-Ecto-sp13_S_contig1057:2892..3139Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1057 2893..3139 -
1681462538.9387465-CDS-Ecto-sp13_S_contig1057:3479..37121681462538.9387465-CDS-Ecto-sp13_S_contig1057:3479..3712Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1057 3480..3712 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1057.531.1prot_Ecto-sp13_S_contig1057.531.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1057 2893..3712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1057.531.1

>prot_Ecto-sp13_S_contig1057.531.1 ID=prot_Ecto-sp13_S_contig1057.531.1|Name=mRNA_Ecto-sp13_S_contig1057.531.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=160bp
MRGVSKRPRSGSRSGSNYFSFSAGSGEDRRADDQQSMLDGQRLQRSAVEK
ATAKEGRRDCGWPAAILCCRSILNNARSPAPSKSKHQRDHTGRETLFSST
ANSARAPIGAGARHSRGARSTAFLREGRVRRYGRRGVVVGGELGRGGMGK
EKGNHGRRPA
back to top

mRNA from alignment at Ecto-sp13_S_contig1057:2893..3712-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1057.531.1 ID=mRNA_Ecto-sp13_S_contig1057.531.1|Name=mRNA_Ecto-sp13_S_contig1057.531.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=820bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1057:2893..3712- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGGGAGTCAGCAAGCGGCCGAGGTCGGGGTCGAGGTCGGGAAGCAA
TTATTTCTCTTTCTCTGCTGGAAGTGGAGAAGACAGGCGGGCTGATGATC
AGCAGAGCATGCTGGATGGACAGCGGCTGCAACGATCGGCGGTTGAAAAG
GCTACGGCAAAGGAAGGGAGGCGGGATTGTGGTTGGCCGGCGGCGATACT
CTGCTGTAGGTCAATATTGAACAACGCACGCAGGTCGGTCGCTGCAGGGA
ACCAGACGAGTTCAGTCTCAACCCCGACCTCTCCGCGCGCTCTTTTTACC
CCCTCCCTCCGAGACGTTTTTTCAGGCAGCCATCCGAAACCCACACTAAA
GTATGATCCTAACAACAAAATCTGTTCATTTTTGCAACATTTTCAAGAGT
TCCGTCTCCAAGCGCGAGTCTCTTTCCCCGAGGCAGGGGGAGGGGGGCTA
AACCAAATAGAACCAGTTCCACCGCAACCAACGAATTCTTTCCAGGGGTT
ACAAGCTATCAGCGTTCCCTCTCCCTGTCTCCATCTCTGTCTCTCTTCAC
CTTAACGAAAACACCATCACCAGCCCCGCCCCCAGCAAAAGCAAGCACCA
GAGAGATCATACCGGGAGGGAGACCCTCTTCTCCTCCACCGCCAACTCCG
CCAGAGCTCCCATAGGCGCCGGCGCCAGACACAGCCGAGGTGCCCGATCC
ACGGCGTTTCTCCGCGAAGGCCGAGTCCGCCGGTACGGTCGCCGTGGGGT
TGTTGTAGGTGGTGAGCTGGGCCGTGGAGGTATGGGAAAAGAGAAGGGAA
ATCACGGACGGCGCCCCGCT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1057:2893..3712-

>mRNA_Ecto-sp13_S_contig1057.531.1 ID=mRNA_Ecto-sp13_S_contig1057.531.1|Name=mRNA_Ecto-sp13_S_contig1057.531.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1057:2893..3712- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGGGAGTCAGCAAGCGGCCGAGGTCGGGGTCGAGGTCGGGAAGCAA
TTATTTCTCTTTCTCTGCTGGAAGTGGAGAAGACAGGCGGGCTGATGATC
AGCAGAGCATGCTGGATGGACAGCGGCTGCAACGATCGGCGGTTGAAAAG
GCTACGGCAAAGGAAGGGAGGCGGGATTGTGGTTGGCCGGCGGCGATACT
CTGCTGTAGGTCAATATTGAACAACGCACGCAGCCCCGCCCCCAGCAAAA
GCAAGCACCAGAGAGATCATACCGGGAGGGAGACCCTCTTCTCCTCCACC
GCCAACTCCGCCAGAGCTCCCATAGGCGCCGGCGCCAGACACAGCCGAGG
TGCCCGATCCACGGCGTTTCTCCGCGAAGGCCGAGTCCGCCGGTACGGTC
GCCGTGGGGTTGTTGTAGGTGGTGAGCTGGGCCGTGGAGGTATGGGAAAA
GAGAAGGGAAATCACGGACGGCGCCCCGCT
back to top