mRNA_Ecto-sp13_S_contig10569.530.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10569.530.1
Unique NamemRNA_Ecto-sp13_S_contig10569.530.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10569.530.1 vs. uniprot
Match: D7G2I3_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I3_ECTSI)

HSP 1 Score: 418 bits (1074), Expect = 1.240e-146
Identity = 226/244 (92.62%), Postives = 227/244 (93.03%), Query Frame = 1 
Query:    1 MSLHRSSGRVGDGQSGKSGGGGSSVVVGKDSSRHLWGIPNVVYTFTHGFMMEMLQLKMLKSQTNLLKTSIQKLKDRLETQKRHELFKNQTIDKSQKQKAGTLSVMKYKVTMSQASLCPFAATNARESTRRRKNSVTSRAMQRVKRPVQQKWTEALDWKKRSCLLTGESLSLFSDPKDTEPSQIVYLKGATAEPELGQAFKDSAFRVETNKWKKGDEVVDGTERRTFTFLAESKDDKELWLYQIR 732
            MSLHRSS  VGD +SGK       VVVGKDSSRHLWGIPNVVYTFTHGFMMEMLQLKMLKSQTNLLKTSIQKLKDRLETQKRHE FKNQTIDKSQKQKAGTLSVMKYKVTMSQA      ATNARESTRRRKNSVTSRAMQRVKRPVQQKWTEALDWKKRSCLLTGESLSLFSDPKDTEPSQIVYLKGATAEPELGQAFKDSAFRVETNKWKKGDEVVDGTERRTFTFLAESKDDKELWLYQIR
Sbjct:    1 MSLHRSSATVGDDKSGKGXXXXXXVVVGKDSSRHLWGIPNVVYTFTHGFMMEMLQLKMLKSQTNLLKTSIQKLKDRLETQKRHEQFKNQTIDKSQKQKAGTLSVMKYKVTMSQA------ATNARESTRRRKNSVTSRAMQRVKRPVQQKWTEALDWKKRSCLLTGESLSLFSDPKDTEPSQIVYLKGATAEPELGQAFKDSAFRVETNKWKKGDEVVDGTERRTFTFLAESKDDKELWLYQIR 238
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BLAST of mRNA_Ecto-sp13_S_contig10569.530.1 vs. uniprot
Match: A0A6H5JJ45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ45_9PHAE)

HSP 1 Score: 405 bits (1040), Expect = 2.200e-134
Identity = 216/244 (88.52%), Postives = 227/244 (93.03%), Query Frame = 1 
Query:    1 MSLHRSSGRVGDGQSGKSGGGGSSVVVGKDSSRHLWGIPNVVYTFTHGFMMEMLQLKMLKSQTNLLKTSIQKLKDRLETQKRHELFKNQTIDKSQKQKAGTLSVMKYKVTMSQASLCPFAATNARESTRRRKNSVTSRAMQRVKRPVQQKWTEALDWKKRSCLLTGESLSLFSDPKDTEPSQIVYLKGATAEPELGQAFKDSAFRVETNKWKKGDEVVDGTERRTFTFLAESKDDKELWLYQIR 732
            MSL RSSGRVGDG+SGK G   SSVVVGKDSSRHLWGIPNVVYTFTHGFM EMLQLKMLKSQTNLLKTSIQKLKDRLETQKRHE FKN+TIDKS K K GTLSVMK+KVTMSQA      ATNARESTRRRKNSVTSRAM++VKRPVQQKWTEA+DWKKRSC+LTGESLSLFSDPKDTEPSQIVYL GATAEPELGQAFK+SAFRVETNKWKKGD++VDGTERRTFTFLAESKDD+ELWLYQIR
Sbjct:  303 MSLDRSSGRVGDGKSGKGGXXXSSVVVGKDSSRHLWGIPNVVYTFTHGFMREMLQLKMLKSQTNLLKTSIQKLKDRLETQKRHEEFKNETIDKSHKHKEGTLSVMKHKVTMSQA------ATNARESTRRRKNSVTSRAMRKVKRPVQQKWTEAVDWKKRSCILTGESLSLFSDPKDTEPSQIVYLTGATAEPELGQAFKESAFRVETNKWKKGDDLVDGTERRTFTFLAESKDDRELWLYQIR 540
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10569.530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2I3_ECTSI1.240e-14692.62PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JJ45_9PHAE2.200e-13488.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10569contigEcto-sp13_S_contig10569:2282..4659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size732
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionPleckstrin homology-like domain
Ec32 orthologEc-12_001630.1
Cds size732
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462538.8497376-CDS-Ecto-sp13_S_contig10569:2281..24221681462538.8497376-CDS-Ecto-sp13_S_contig10569:2281..2422Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10569 2282..2422 -
1681462538.8613045-CDS-Ecto-sp13_S_contig10569:2928..31621681462538.8613045-CDS-Ecto-sp13_S_contig10569:2928..3162Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10569 2929..3162 -
1681462538.871883-CDS-Ecto-sp13_S_contig10569:3710..38061681462538.871883-CDS-Ecto-sp13_S_contig10569:3710..3806Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10569 3711..3806 -
1681462538.8823385-CDS-Ecto-sp13_S_contig10569:4141..42711681462538.8823385-CDS-Ecto-sp13_S_contig10569:4141..4271Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10569 4142..4271 -
1681462538.8951979-CDS-Ecto-sp13_S_contig10569:4528..46591681462538.8951979-CDS-Ecto-sp13_S_contig10569:4528..4659Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10569 4529..4659 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10569.530.1prot_Ecto-sp13_S_contig10569.530.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10569 2282..4659 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10569.530.1

>prot_Ecto-sp13_S_contig10569.530.1 ID=prot_Ecto-sp13_S_contig10569.530.1|Name=mRNA_Ecto-sp13_S_contig10569.530.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=244bp
MSLHRSSGRVGDGQSGKSGGGGSSVVVGKDSSRHLWGIPNVVYTFTHGFM
MEMLQLKMLKSQTNLLKTSIQKLKDRLETQKRHELFKNQTIDKSQKQKAG
TLSVMKYKVTMSQASLCPFAATNARESTRRRKNSVTSRAMQRVKRPVQQK
WTEALDWKKRSCLLTGESLSLFSDPKDTEPSQIVYLKGATAEPELGQAFK
DSAFRVETNKWKKGDEVVDGTERRTFTFLAESKDDKELWLYQIR
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mRNA from alignment at Ecto-sp13_S_contig10569:2282..4659-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10569.530.1 ID=mRNA_Ecto-sp13_S_contig10569.530.1|Name=mRNA_Ecto-sp13_S_contig10569.530.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10569:2282..4659- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCCTCCACAGATCGTCCGGGAGGGTCGGTGACGGCCAGAGCGGCAA
GAGCGGCGGCGGCGGATCGTCGGTGGTGGTGGGAAAGGACTCGTCCCGAC
ACCTGTGGGGGATCCCTAACGTCGTGTACACGTGAGAGCTGTCACAGCGC
AGCAGTTGTTTCGATTTCGTCCTCAGAAAAATTGCTTCGACAAACTTGCA
AATCCTTCGCTGAAAAACAAATTCGACATTTGCATATTGGCCTCTTCTAG
TTTTTTTTTTTCGGAAAAGGTTCGAAAGTTGATCTTGCGTTATGGGCCAA
TTCTCGGTCAAAGAAACGTGGTTTCGTTTTTCGCCTTTAGATTAAAGCAG
TATATTTTGATTGGTTTCGTCTGTTTTTTCTTGGCCAGGTTCACGCACGG
GTTTATGATGGAGATGCTGCAGCTCAAGATGCTCAAGAGCCAGACCAACC
TCCTTAAGACGAGCATCCAGAAGCTCAAGGACAGACTCGAGACCCAGAAG
AGACACGAGCTGTTCAAGGTTGGCCCTACGTGTCTCCTTCCTACATAGTT
TTTGACTGCGGTAGCTGACTGGCTGCCTCCCTGCTCGTGCATGGGGTGCT
CAGGGGTTGTTGGTGGTGACCTTGAGGCCTTTGTGGTGAAGCGTTTCGAT
CGCGAGAGATACCTCCCGGGGAGAATAGAAGAGCGAACCGGTTGGGTATT
GGACGACCGTCGAGGGTAGTTTACGACCAAGTAGTGCCCATGATACTCAG
TTGTCGTGCTTTGGTGTGTACACTAATCATCAATCATCTATCTCTCTCTC
TACCTCTACCTCTTGCGTTCTCTCTCTCTCCCTCCTGACGATTGGAGTAA
CAGAACCAGACCATCGACAAATCCCAAAAGCAGAAGGCCGGAACGCTGTC
CGTCATGAAGTACAAAGTCACCATGTCCCAGGCGAGTTTGTGTCCCTTCG
TTCTTTTTGCGCCCTTTATTTGTTTCACTGCAGACAGGGCGACAGTGTTT
GGCTGCGTTAGCTGCCGTGTGATTTAGCGCAAACGCGGTTGTTGTTCGTG
CCATCTTCAGTTCCACGCCCAAACACACACTCGATCGGCACCTATCGTTT
GCCGTATCGGCGGCGGCGTTGATAGAGGCGATTTACTTTATTTTTTGGTG
CTTACTCCTACTTTTTGGCACAAAATCGATGACGAACATGAGACACTCGA
ATCACACCACGTCAATGTGTCCTTGCATCTCGTGTCGGACGACGTTGTTG
CTTAAAATTGAAAAGGAGGATGAAAACACACAGCAAACACGTGCAGACTT
GCTTGGCATCAACACATGTACCTGCTTACGAAGAAGCAAAACAAATAAAG
TACCACAGTAATTCAACAAGCCATGAAAAAAATCAACACACACAAACGCA
TGTGCACACGAAGGCTTGCTTAGCATCAACCTTTGTACCTGCTCAAGAAA
CACAAAATATATTCAAAAAATAAAAATAAAAACAAAAACAAAATCAGGCG
GCGACAAACGCGCGCGAGTCCACCCGGCGACGGAAGAACTCTGTGACGTC
GAGGGCAATGCAAAGGGTCAAGCGCCCTGTGCAGCAGAAGTGGACGGAGG
CTCTGGACTGGAAGAAGCGGAGCTGTCTCCTCACGGGGGAGAGCCTGTCT
CTCTTCAGTGACCCAAAGGACACGGAGCCGAGCCAGATCGTGTACCTTAA
GGGCGCCACGGCGGAGCCCGAGCTTGGACAGGTTTGTTGTTGTTACTGTT
GTTGTTGTTGCGGTTGCGGTTTCGGTTGCGGTTGTTGTTGTTGCTGTTGC
TGATGCGGCTGTTGTTGGTGTAGTTGAGACGGTTGATGGATGGAGGGGTG
GATGGAGTTATTTGTGGCCTTTCGGAGGAACTAACGCGAACCCCACGGCA
TGCATTACATCAGCTTTGTGGGTGTCGACCACCAGTCTTACTGGTTCGAC
GCCCCTTCCGTGTCCGTAGGTGTCTCCCGTTAGTGCTACGGGACGACGTG
GTGACCCATTAAGTCGCCTGGCCTGCTGTGCTTTGCCTGTTTTCCCGTAT
GCTGTAACCGCAGCCTTACCTTGTTCTTACATCCCTACACATGGTGATTC
GGCACTTGTGTCGAAACCAAAACTTTCGCCCTATCTCCCCCCGCCTCAAC
CCCTGCCGGGTTTTCCACGCCCGCTGGTCGGAAACAAAATATGGGACACG
CGGGTTTTATGTACGTGGGACGGGACTTATGGGACAGGCTTTCAAGGACT
CGGCGTTCCGCGTGGAGACGAACAAGTGGAAGAAGGGCGACGAGGTGGTG
GACGGGACGGAGCGGCGGACGTTCACGTTCCTCGCGGAGAGCAAGGACGA
CAAGGAGCTGTGGCTCTACCAGATCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10569:2282..4659-

>mRNA_Ecto-sp13_S_contig10569.530.1 ID=mRNA_Ecto-sp13_S_contig10569.530.1|Name=mRNA_Ecto-sp13_S_contig10569.530.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=732bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10569:2282..4659- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCCTCCACAGATCGTCCGGGAGGGTCGGTGACGGCCAGAGCGGCAA
GAGCGGCGGCGGCGGATCGTCGGTGGTGGTGGGAAAGGACTCGTCCCGAC
ACCTGTGGGGGATCCCTAACGTCGTGTACACGTTCACGCACGGGTTTATG
ATGGAGATGCTGCAGCTCAAGATGCTCAAGAGCCAGACCAACCTCCTTAA
GACGAGCATCCAGAAGCTCAAGGACAGACTCGAGACCCAGAAGAGACACG
AGCTGTTCAAGAACCAGACCATCGACAAATCCCAAAAGCAGAAGGCCGGA
ACGCTGTCCGTCATGAAGTACAAAGTCACCATGTCCCAGGCGAGTTTGTG
TCCCTTCGCGGCGACAAACGCGCGCGAGTCCACCCGGCGACGGAAGAACT
CTGTGACGTCGAGGGCAATGCAAAGGGTCAAGCGCCCTGTGCAGCAGAAG
TGGACGGAGGCTCTGGACTGGAAGAAGCGGAGCTGTCTCCTCACGGGGGA
GAGCCTGTCTCTCTTCAGTGACCCAAAGGACACGGAGCCGAGCCAGATCG
TGTACCTTAAGGGCGCCACGGCGGAGCCCGAGCTTGGACAGGCTTTCAAG
GACTCGGCGTTCCGCGTGGAGACGAACAAGTGGAAGAAGGGCGACGAGGT
GGTGGACGGGACGGAGCGGCGGACGTTCACGTTCCTCGCGGAGAGCAAGG
ACGACAAGGAGCTGTGGCTCTACCAGATCAGG
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