mRNA_Ecto-sp13_S_contig10566.527.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10566.527.1
Unique NamemRNA_Ecto-sp13_S_contig10566.527.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10566.527.1 vs. uniprot
Match: D7FQ58_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ58_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 2.530e-78
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1
Query:    1 FGVFPCLTFTHSPVELPVVPLSVTSRAVFMVENNGFSDMEVSYRLPQHCPVDIAVLFPEGRQLGAGVEQIPVELSFRSTKPVSFSCMLDVFDADGGHYPLPIRGCADNCLLTNFPFVDAYRHR 369
            FGVFPCLTFTHSPVELPVVPLSVTSRAVFMVENNGFSDMEVSYRLPQHCPVDIAV FPEGRQLGAGVEQIPVELSFRSTKPVSFSCMLDVFDADGGHYPLPIRGCADNCLLTNFPFVDAYRHR
Sbjct: 1435 FGVFPCLTFTHSPVELPVVPLSVTSRAVFMVENNGFSDMEVSYRLPQHCPVDIAVSFPEGRQLGAGVEQIPVELSFRSTKPVSFSCMLDVFDADGGHYPLPIRGCADNCLLTNFPFVDAYRHR 1557          
BLAST of mRNA_Ecto-sp13_S_contig10566.527.1 vs. uniprot
Match: A0A835Z976_9STRA (Calponin-homology (CH) domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z976_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.510e-34
Identity = 65/119 (54.62%), Postives = 85/119 (71.43%), Query Frame = 1
Query:    4 GVFPCLTFTHSPVELPVVPLSVTSRAVFMVENNGFSDMEVSYRLPQHCPVDIAVLFPEGRQLGAGVEQIPVELSFRSTKPVSFSCMLDVFDADGGHYPLPIRGCADNCLLTNFPFVDAY 360
            GV+P L+F+   V LPVVPL V S A F+V N GFS++EV+YRL    P ++ V FP+GR LG G   + VE++F+S KP SFS  LDVFD++ G Y + + GCADNCLLTN+PFV A+
Sbjct:  665 GVYPRLSFSCDEVVLPVVPLGVRSAARFLVVNQGFSELEVTYRLLPQSPPELRVDFPDGRTLGVGRPSLFVEVTFQSDKPASFSVPLDVFDSENGQYSVTVTGCADNCLLTNWPFVAAH 783          
BLAST of mRNA_Ecto-sp13_S_contig10566.527.1 vs. uniprot
Match: A0A024UTG8_9STRA (Calponin-homology (CH) domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UTG8_9STRA)

HSP 1 Score: 120 bits (301), Expect = 3.720e-29
Identity = 54/122 (44.26%), Postives = 84/122 (68.85%), Query Frame = 1
Query:    4 GVFPCLTFTHSPVELPVVPLSVTSRAVFMVENNGFSDMEVSYRLPQHCP-VDIAVLFPEGRQLGAGVEQIPVELSFRSTKPVSFSCMLDVFDADGGHYPLPIRGCADNCLLTNFPFVDAYRH 366
            G+ P L+F+ + V+LP VPL +TS A F + + G+ ++E+SYRLP     V IAV FP+G+ +G    ++ V++SF STK ++F+  L+ FD +G  + LP+ G  DNC+LTNF FV+A+R+
Sbjct: 1228 GIHPHLSFSVARVDLPTVPLGITSTATFFICSTGYDNLELSYRLPIDLSRVPIAVTFPDGKSIGIANPKVQVDISFVSTKSIAFNAKLEFFDVEGNQFDLPLSGATDNCILTNFGFVEAHRN 1349          
BLAST of mRNA_Ecto-sp13_S_contig10566.527.1 vs. uniprot
Match: A0A2R5GBW7_9STRA (Cilia-and flagella-associated protein 65 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GBW7_9STRA)

HSP 1 Score: 119 bits (298), Expect = 9.460e-29
Identity = 57/121 (47.11%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    4 GVFPCLTFTHSPVELPVVPLSVTSRAVFMVENNGFSDMEVSYRLPQHCP-VDIAVLFPEGRQLGAGVEQIPVELSFRSTKPVSFSCMLDVFDADGGHYPLPIRGCADNCLLTNFPFVDAYR 363
            GV+P L F  S V LP VPL V ++ VF ++N+G+  +++ YRLP     V +A+ FPEG+ +G    QIPVE++F S KP+SF+  +D  D DG  + + I G A+NCLLT FPFV A R
Sbjct: 1450 GVYPKLRFDTSEVVLPTVPLGVKAKGVFYIQNDGYDSLDLRYRLPAETQRVPLAISFPEGKNIGLSRPQIPVEVTFTSRKPMSFTAKVDFVDTDGNAFGIYITGTAENCLLTAFPFVAAVR 1570          
BLAST of mRNA_Ecto-sp13_S_contig10566.527.1 vs. uniprot
Match: A0A6A4ZVD0_9STRA (Calponin-homology (CH) domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZVD0_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.250e-28
Identity = 52/122 (42.62%), Postives = 83/122 (68.03%), Query Frame = 1
Query:    4 GVFPCLTFTHSPVELPVVPLSVTSRAVFMVENNGFSDMEVSYRLPQHCP-VDIAVLFPEGRQLGAGVEQIPVELSFRSTKPVSFSCMLDVFDADGGHYPLPIRGCADNCLLTNFPFVDAYRH 366
            G+ P L+F+   V+LP VPL +TS A F + + G+ ++E+SYRLP     V I V FP+G+ +G    ++ +++SF STK ++F+  L+ FDA+G  + +P+ G  DNC+LTNF FV+A+R+
Sbjct:  264 GIHPHLSFSVPRVDLPTVPLGITSTATFFIYSTGYDNLELSYRLPIDLSRVPITVTFPDGKAIGIANPKVQIDISFMSTKSIAFNAKLEFFDAEGSQFDVPLSGATDNCVLTNFGFVEAHRN 385          
BLAST of mRNA_Ecto-sp13_S_contig10566.527.1 vs. uniprot
Match: W4GNF4_9STRA (Calponin-homology (CH) domain-containing protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GNF4_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.290e-28
Identity = 52/122 (42.62%), Postives = 83/122 (68.03%), Query Frame = 1
Query:    4 GVFPCLTFTHSPVELPVVPLSVTSRAVFMVENNGFSDMEVSYRLPQHCP-VDIAVLFPEGRQLGAGVEQIPVELSFRSTKPVSFSCMLDVFDADGGHYPLPIRGCADNCLLTNFPFVDAYRH 366
            G+ P L+F+   V+LP VPL +TS A F + + G+ ++E+SYRLP     V I V FP+G+ +G    ++ +++SF STK ++F+  L+ FDA+G  + +P+ G  DNC+LTNF FV+A+R+
Sbjct: 1230 GIHPHLSFSVPRVDLPTVPLGITSTATFFIYSTGYDNLELSYRLPIDLSRVPITVTFPDGKAIGIANPKVQIDISFMSTKSIAFNAKLEFFDAEGSQFDVPLSGATDNCVLTNFGFVEAHRN 1351          
BLAST of mRNA_Ecto-sp13_S_contig10566.527.1 vs. uniprot
Match: A0A485LET0_9STRA (Aste57867_20364 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LET0_9STRA)

HSP 1 Score: 117 bits (293), Expect = 4.450e-28
Identity = 52/122 (42.62%), Postives = 82/122 (67.21%), Query Frame = 1
Query:    4 GVFPCLTFTHSPVELPVVPLSVTSRAVFMVENNGFSDMEVSYRLPQHCP-VDIAVLFPEGRQLGAGVEQIPVELSFRSTKPVSFSCMLDVFDADGGHYPLPIRGCADNCLLTNFPFVDAYRH 366
            G+ P L+F+   V+LP VPL +T+ A F + + G+ ++E+SYRLP     V I V FPEG+ +G    ++ ++LSF  TK ++F+  L+ FDA+G  + LP+ G  DNC+LTNF F++A+R+
Sbjct: 1224 GIHPHLSFSVPRVDLPTVPLGITTTASFFIHSTGYDNLELSYRLPIDLSRVPITVTFPEGKSIGIANPKVQIDLSFCCTKSIAFNAKLEFFDAEGSQFDLPLSGATDNCVLTNFGFLEAHRN 1345          
BLAST of mRNA_Ecto-sp13_S_contig10566.527.1 vs. uniprot
Match: A0A329S381_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S381_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.190e-25
Identity = 51/120 (42.50%), Postives = 75/120 (62.50%), Query Frame = 1
Query:    4 GVFPCLTFTHSPVELPVVPLSVTSRAVFMVENNGFSDMEVSYRLPQHCP-VDIAVLFPEGRQLGAGVEQIPVELSFRSTKPVSFSCMLDVFDADGGHYPLPIRGCADNCLLTNFPFVDAY 360
            G++P L+F+ + V LP VPL VT+ A F V   G+  +E++ R+P       + VLFP G+ L      +PVEL F ST  V+F+  ++ FDADG  + LP+ GCA+NCL TN+ F+ A+
Sbjct: 1416 GIYPHLSFSTNRVVLPTVPLGVTASAKFQVYATGYDHLELNCRVPLDTSRAPLTVLFPRGKTLSMACPSLPVELRFSSTSSVAFNARVEFFDADGNSFTLPVAGCAENCLFTNYTFLQAH 1535          
BLAST of mRNA_Ecto-sp13_S_contig10566.527.1 vs. uniprot
Match: W2QTD5_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2QTD5_PHYPN)

HSP 1 Score: 107 bits (267), Expect = 1.410e-24
Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    4 GVFPCLTFTHSPVELPVVPLSVTSRAVFMVENNGFSDMEVSYRLPQHCP-VDIAVLFPEGRQLGAGVEQIPVELSFRSTKPVSFSCMLDVFDADGGHYPLPIRGCADNCLLTNFPFVDAY 360
            G++P L+F+ + V LP VPL +T+ A F V   G+  +E++ R+P       + VLFP G+ L      +PVEL F ST  V+F+  ++ FDADG  + LP+ GCA+NCL TN+ F+  +
Sbjct:  567 GIYPHLSFSTNRVVLPTVPLGMTANAQFHVYATGYDHLELNCRVPLDTSRAPLTVLFPRGKTLSMACPSLPVELRFSSTSSVAFNARVEFFDADGNSFALPVAGCAENCLFTNYSFLQTH 686          
BLAST of mRNA_Ecto-sp13_S_contig10566.527.1 vs. uniprot
Match: V9FWK4_PHYPR (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=V9FWK4_PHYPR)

HSP 1 Score: 107 bits (267), Expect = 1.430e-24
Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    4 GVFPCLTFTHSPVELPVVPLSVTSRAVFMVENNGFSDMEVSYRLPQHCP-VDIAVLFPEGRQLGAGVEQIPVELSFRSTKPVSFSCMLDVFDADGGHYPLPIRGCADNCLLTNFPFVDAY 360
            G++P L+F+ + V LP VPL +T+ A F V   G+  +E++ R+P       + VLFP G+ L      +PVEL F ST  V+F+  ++ FDADG  + LP+ GCA+NCL TN+ F+  +
Sbjct: 1407 GIYPHLSFSTNRVVLPTVPLGMTANAQFHVYATGYDHLELNCRVPLDTSRAPLTVLFPRGKTLSMACPSLPVELRFSSTSSVAFNARVEFFDADGNSFALPVAGCAENCLFTNYSFLQTH 1526          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10566.527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ58_ECTSI2.530e-7899.19Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A835Z976_9STRA1.510e-3454.62Calponin-homology (CH) domain-containing protein n... [more]
A0A024UTG8_9STRA3.720e-2944.26Calponin-homology (CH) domain-containing protein n... [more]
A0A2R5GBW7_9STRA9.460e-2947.11Cilia-and flagella-associated protein 65 n=1 Tax=H... [more]
A0A6A4ZVD0_9STRA1.250e-2842.62Calponin-homology (CH) domain-containing protein (... [more]
W4GNF4_9STRA1.290e-2842.62Calponin-homology (CH) domain-containing protein n... [more]
A0A485LET0_9STRA4.450e-2842.62Aste57867_20364 protein n=1 Tax=Aphanomyces stella... [more]
A0A329S381_9STRA1.190e-2542.50Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
W2QTD5_PHYPN1.410e-2440.83Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
V9FWK4_PHYPR1.430e-2440.83Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10566contigEcto-sp13_S_contig10566:5147..5762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score261.5
Seed ortholog evalue1.9e-67
Seed eggNOG ortholog2880.D7FQ58
Preferred nameCHDC2
Model size372
KEGG rclassRC00299
KEGG koko:K01593
KEGG ReactionR00685,R00699,R00736,R02080,R02701,R04909
KEGG Pathwayko00350,ko00360,ko00380,ko00901,ko00950,ko00965,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00350,map00360,map00380,map00901,map00950,map00965,map01100,map01110,map04726,map04728,map05030,map05031,map05034
KEGG ModuleM00037,M00042
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2CBV6@1,2QQ4Q@2759
EC4.1.1.105,4.1.1.28
Cds size372
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462538.7045484-CDS-Ecto-sp13_S_contig10566:5146..53321681462538.7045484-CDS-Ecto-sp13_S_contig10566:5146..5332Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10566 5147..5332 +
1681462538.7173886-CDS-Ecto-sp13_S_contig10566:5576..57621681462538.7173886-CDS-Ecto-sp13_S_contig10566:5576..5762Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10566 5577..5762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10566.527.1prot_Ecto-sp13_S_contig10566.527.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10566 5147..5762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10566.527.1

>prot_Ecto-sp13_S_contig10566.527.1 ID=prot_Ecto-sp13_S_contig10566.527.1|Name=mRNA_Ecto-sp13_S_contig10566.527.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
FGVFPCLTFTHSPVELPVVPLSVTSRAVFMVENNGFSDMEVSYRLPQHCP
VDIAVLFPEGRQLGAGVEQIPVELSFRSTKPVSFSCMLDVFDADGGHYPL
PIRGCADNCLLTNFPFVDAYRHR*
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mRNA from alignment at Ecto-sp13_S_contig10566:5147..5762+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10566.527.1 ID=mRNA_Ecto-sp13_S_contig10566.527.1|Name=mRNA_Ecto-sp13_S_contig10566.527.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=616bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10566:5147..5762+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCGGTGTGTTCCCGTGCTTGACGTTTACGCACTCCCCGGTGGAACTCCC GGTCGTGCCGCTGTCGGTGACGTCCCGGGCGGTGTTTATGGTCGAGAACA ACGGGTTCAGCGACATGGAGGTATCTTACCGGTTGCCGCAGCACTGCCCC GTGGATATCGCGGTATTGTTTCCTGAGGGACGCCAGGTGAAGCACGTTCT ATCTTCCAACGGTATTTACCGTTGCCCTGGTGTTGTTGTTTCGGGGTCGT TTACATTTGTGAAGAACAAGGGAGGTTCTTGTGCCTAGCGGCGTTAGGAG GAAGTTCAACTATGTGCCAGCACCCGCCAAATTTTCAAGGTAGATTTCAA CTCCAAGAACCCAGAACTGCCTGACTTCTACCCCTTGCGCTCGTCCCGTT GATGCGCTTTCGCATGTGCAATCATAACAGCTCGGTGCGGGGGTAGAGCA GATCCCCGTGGAGCTGAGCTTTCGCTCAACGAAACCCGTGAGCTTCAGCT GCATGTTGGACGTCTTTGATGCGGACGGCGGGCACTATCCCTTGCCGATC AGGGGCTGCGCGGATAACTGCCTGCTGACGAACTTTCCCTTCGTCGACGC GTACCGGCATCGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10566:5147..5762+

>mRNA_Ecto-sp13_S_contig10566.527.1 ID=mRNA_Ecto-sp13_S_contig10566.527.1|Name=mRNA_Ecto-sp13_S_contig10566.527.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10566:5147..5762+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCGGTGTGTTCCCGTGCTTGACGTTTACGCACTCCCCGGTGGAACTCCC
GGTCGTGCCGCTGTCGGTGACGTCCCGGGCGGTGTTTATGGTCGAGAACA
ACGGGTTCAGCGACATGGAGGTATCTTACCGGTTGCCGCAGCACTGCCCC
GTGGATATCGCGGTATTGTTTCCTGAGGGACGCCAGCTCGGTGCGGGGGT
AGAGCAGATCCCCGTGGAGCTGAGCTTTCGCTCAACGAAACCCGTGAGCT
TCAGCTGCATGTTGGACGTCTTTGATGCGGACGGCGGGCACTATCCCTTG
CCGATCAGGGGCTGCGCGGATAACTGCCTGCTGACGAACTTTCCCTTCGT
CGACGCGTACCGGCATCGGTAA
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